Wall clock time and date at job start Fri Apr 10 2020 14:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00377 * 2 1 4 4 H 1.48493 * 109.47472 * 274.99269 * 3 2 1 5 5 H 1.48511 * 109.46660 * 34.98909 * 3 2 1 6 6 H 1.48497 * 109.47223 * 154.98227 * 3 2 1 7 7 C 1.38817 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00361 * 185.80556 * 7 2 1 9 9 N 1.36940 * 119.99516 * 5.79810 * 7 2 1 10 10 C 1.48151 * 126.40861 * 353.05417 * 9 7 2 11 11 C 1.55288 * 107.04495 * 184.92446 * 10 9 7 12 12 C 1.53745 * 101.84213 * 22.48160 * 11 10 9 13 13 H 1.08997 * 111.31192 * 79.84997 * 12 11 10 14 14 C 1.52242 * 114.74118 * 207.25069 * 12 11 10 15 15 N 1.47717 * 106.36981 * 169.56871 * 14 12 11 16 16 C 1.34770 * 119.68492 * 127.91745 * 15 14 12 17 17 O 1.21618 * 119.99831 * 353.08316 * 16 15 14 18 18 C 1.47236 * 119.99903 * 173.08631 * 16 15 14 19 19 C 1.37008 * 127.18870 * 158.68619 * 18 16 15 20 20 N 1.33314 * 106.37288 * 179.97438 * 19 18 16 21 21 N 1.28516 * 109.43848 * 359.97438 * 20 19 18 22 22 N 1.28708 * 110.63672 * 359.75339 * 21 20 19 23 23 H 0.97008 * 126.03454 * 180.25928 * 22 21 20 24 24 C 1.46597 * 120.63407 * 307.94278 * 15 14 12 25 25 C 1.53964 * 110.57354 * 47.82008 * 24 15 14 26 26 C 1.45471 * 126.40198 * 172.74818 * 9 7 2 27 27 H 1.08997 * 109.25767 * 266.19437 * 26 9 7 28 28 H 0.97004 * 119.99896 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.92309 * 304.27313 * 10 9 7 30 30 H 1.09002 * 109.92085 * 65.57896 * 10 9 7 31 31 H 1.09005 * 110.95938 * 140.61706 * 11 10 9 32 32 H 1.08995 * 110.95562 * 264.34247 * 11 10 9 33 33 H 1.09007 * 110.06651 * 288.77706 * 14 12 11 34 34 H 1.08997 * 110.06853 * 50.35326 * 14 12 11 35 35 H 1.08006 * 126.81416 * 359.92682 * 19 18 16 36 36 H 1.08994 * 109.26046 * 168.10601 * 24 15 14 37 37 H 1.09005 * 109.25791 * 287.57964 * 24 15 14 38 38 H 1.08999 * 109.88046 * 68.41233 * 25 24 15 39 39 H 1.09004 * 109.87978 * 189.41473 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0861 -1.2046 0.0941 9 7 1.3308 -2.3850 -0.1209 10 6 -0.1405 -2.5585 -0.1142 11 6 -0.4189 -4.0857 -0.1520 12 6 0.8967 -4.6600 0.3987 13 1 0.9316 -4.5978 1.4863 14 6 1.2299 -6.0650 -0.0837 15 7 2.6205 -6.3309 0.3375 16 6 2.9058 -7.4523 1.0284 17 8 2.0064 -8.1759 1.4114 18 6 4.3062 -7.8013 1.3197 19 6 4.7643 -8.6313 2.3089 20 7 6.0925 -8.6521 2.1968 21 7 6.4510 -7.8996 1.2186 22 7 5.4232 -7.3692 0.6540 23 1 5.4371 -6.7678 -0.1070 24 6 3.6933 -5.3864 0.0117 25 6 3.2713 -3.9472 0.3597 26 6 1.9186 -3.7054 -0.2854 27 1 1.9786 -3.9424 -1.3476 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5613 -2.1267 0.7938 30 1 -0.5749 -2.0801 -0.9921 31 1 -1.2579 -4.3452 0.4938 32 1 -0.5952 -4.4247 -1.1727 33 1 0.5553 -6.7878 0.3754 34 1 1.1517 -6.1160 -1.1697 35 1 4.1677 -9.1625 3.0358 36 1 4.5862 -5.6466 0.5799 37 1 3.9148 -5.4476 -1.0539 38 1 3.1959 -3.8344 1.4412 39 1 4.0009 -3.2409 -0.0365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036758294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:33 Heat of formation + Delta-G solvation = 88.560734 kcal Electronic energy + Delta-G solvation = -23778.094338 eV Core-core repulsion = 20337.531067 eV Total energy + Delta-G solvation = -3440.563271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.55405 -41.48537 -39.71588 -37.11165 -35.02065 -34.28245 -33.13702 -32.66030 -31.25696 -29.72397 -26.98336 -26.04388 -24.60094 -23.96218 -23.56836 -22.11678 -21.73699 -21.02871 -19.24334 -18.52596 -17.91618 -17.53222 -17.22382 -16.93897 -16.34303 -15.96738 -15.66498 -15.35982 -15.28646 -14.78881 -14.56043 -14.18684 -13.96230 -13.36979 -13.31526 -13.25052 -13.12248 -12.71503 -12.57042 -12.41650 -12.23188 -12.00934 -11.82857 -11.79187 -11.64256 -11.51457 -11.31487 -10.99097 -10.69882 -10.67345 -9.89985 -8.86085 -7.85401 -5.18696 -0.22241 1.13289 1.31793 1.46508 1.47092 1.55468 1.60226 1.94846 2.49964 3.01384 3.34659 3.37890 3.48580 3.58306 3.78011 3.89031 3.97323 4.03660 4.09458 4.12401 4.30035 4.41671 4.58373 4.65193 4.66610 4.77913 4.83691 4.90554 4.99049 5.08208 5.16917 5.32566 5.51457 5.52723 5.57056 5.67729 5.76588 6.04690 6.20769 6.74135 7.09121 7.12650 7.79748 8.48299 9.27176 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.004275 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.701914 B = 6547.787292 C = 7494.956839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.088 0.912 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.121 4.121 12 C -0.112 4.112 13 H 0.062 0.938 14 C 0.136 3.864 15 N -0.599 5.599 16 C 0.598 3.402 17 O -0.546 6.546 18 C -0.062 4.062 19 C 0.029 3.971 20 N -0.293 5.293 21 N -0.059 5.059 22 N -0.357 5.357 23 H 0.467 0.533 24 C 0.099 3.901 25 C -0.123 4.123 26 C 0.157 3.843 27 H 0.034 0.966 28 H 0.244 0.756 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.220 0.780 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 -15.045 -1.735 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.340 5.340 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.132 4.132 13 H 0.081 0.919 14 C 0.015 3.985 15 N -0.331 5.331 16 C 0.383 3.617 17 O -0.422 6.422 18 C -0.197 4.197 19 C -0.131 4.131 20 N -0.158 5.158 21 N -0.041 5.041 22 N -0.091 5.091 23 H 0.322 0.678 24 C -0.024 4.024 25 C -0.162 4.162 26 C 0.050 3.950 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.237 0.763 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.575 -15.383 -1.465 17.673 hybrid contribution -1.147 2.091 -0.242 2.397 sum 7.429 -13.292 -1.707 15.323 Atomic orbital electron populations 1.70165 1.06388 1.25088 1.58456 1.25604 0.96421 1.00900 1.03047 0.85176 0.77975 0.79779 0.77144 1.21567 1.22814 1.19041 1.19400 0.91488 0.83464 1.41629 0.89389 1.44473 1.02229 1.01951 1.85384 1.21304 0.83821 0.91753 0.97517 1.22580 0.96777 0.94936 1.01633 1.22552 0.96620 0.94657 0.99412 0.91922 1.21672 0.80597 0.95401 1.00849 1.48247 1.10452 1.20137 1.54239 1.16923 0.85505 0.81393 0.77855 1.90845 1.46536 1.52260 1.52579 1.22167 0.89210 1.06684 1.01594 1.24272 0.91117 0.98370 0.99309 1.74991 1.12840 1.15667 1.12258 1.78172 1.12515 1.07971 1.05481 1.46333 1.03459 1.33514 1.25833 0.67805 1.22269 0.88934 0.88159 1.03075 1.21835 0.98182 0.95542 1.00671 1.21021 0.92778 0.84853 0.96383 0.94819 0.94628 0.97414 0.97326 0.90476 0.89876 0.88514 0.88329 0.76308 0.89091 0.87111 0.92962 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.05 10.49 21.65 0.23 -55.82 16 2 C -0.07 -3.66 5.49 84.86 0.47 -3.19 16 3 Si 0.97 44.20 29.56 68.60 2.03 46.23 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.23 -12.00 9.89 84.03 0.83 -11.17 16 8 H 0.09 4.27 7.18 -2.91 -0.02 4.25 16 9 N -0.62 -28.92 3.35 -668.80 -2.24 -31.15 16 10 C 0.18 8.46 5.43 86.85 0.47 8.93 16 11 C -0.12 -3.96 6.53 31.63 0.21 -3.75 16 12 C -0.11 -3.37 2.86 -9.87 -0.03 -3.39 16 13 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.14 3.08 5.97 85.90 0.51 3.59 16 15 N -0.60 -12.41 3.00 -822.11 -2.47 -14.87 16 16 C 0.60 13.50 7.63 86.61 0.66 14.16 16 17 O -0.55 -15.60 16.35 -4.09 -0.07 -15.66 16 18 C -0.06 -1.20 6.44 40.41 0.26 -0.94 16 19 C 0.03 0.58 11.93 84.18 1.00 1.59 16 20 N -0.29 -6.76 12.35 -57.50 -0.71 -7.47 16 21 N -0.06 -1.24 13.35 37.02 0.49 -0.75 16 22 N -0.36 -5.64 5.75 -48.52 -0.28 -5.91 16 23 H 0.47 4.30 6.38 -219.89 -1.40 2.89 16 24 C 0.10 1.69 5.04 86.69 0.44 2.13 16 25 C -0.12 -3.33 5.45 30.53 0.17 -3.17 16 26 C 0.16 5.32 2.59 45.71 0.12 5.44 16 27 H 0.03 1.12 7.94 -2.39 -0.02 1.10 16 28 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.01 0.41 7.46 -2.39 -0.02 0.39 16 30 H 0.01 0.45 7.58 -2.39 -0.02 0.43 16 31 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 33 H 0.10 2.27 6.98 -2.38 -0.02 2.25 16 34 H 0.10 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.22 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.09 1.25 4.39 -2.39 -0.01 1.24 16 37 H 0.11 1.23 8.13 -2.38 -0.02 1.21 16 38 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 39 H 0.08 2.23 7.63 -2.38 -0.02 2.21 16 Total: -1.00 -70.29 311.39 1.78 -68.51 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -0.31 Total: 6.68 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.11 Total: 10.22 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.97 Total: -115.98 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.07 Total: -15.66 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.29 1.78 -68.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036758294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.070 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds