Wall clock time and date at job start Fri Apr 10 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47345 * 119.99813 * 3 2 1 6 6 H 1.48505 * 109.46936 * 239.99679 * 3 2 1 7 7 C 1.38813 * 119.99776 * 180.26782 * 2 1 3 8 8 H 1.08004 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.48154 * 126.39458 * 359.68215 * 9 7 2 11 11 C 1.55354 * 107.01546 * 174.86023 * 10 9 7 12 12 C 1.53699 * 101.90971 * 337.93254 * 11 10 9 13 13 H 1.08997 * 111.70084 * 280.94135 * 12 11 10 14 14 C 1.52516 * 114.38629 * 152.67261 * 12 11 10 15 15 C 1.53886 * 106.65163 * 183.94999 * 14 12 11 16 16 N 1.46592 * 110.71540 * 52.17470 * 15 14 12 17 17 C 1.34774 * 119.75019 * 132.28457 * 16 15 14 18 18 O 1.21618 * 120.00209 * 179.51419 * 17 16 15 19 19 C 1.47240 * 120.00109 * 359.52004 * 17 16 15 20 20 C 1.37002 * 127.18856 * 206.59442 * 19 17 16 21 21 N 1.33318 * 106.37103 * 179.84139 * 20 19 17 22 22 N 1.28507 * 109.43817 * 0.42792 * 21 20 19 23 23 N 1.28709 * 110.64167 * 359.72562 * 22 21 20 24 24 H 0.96994 * 126.03988 * 179.97438 * 23 22 21 25 25 C 1.47790 * 120.49938 * 312.27314 * 16 15 14 26 26 C 1.45507 * 126.40040 * 179.97438 * 9 7 2 27 27 H 1.09002 * 109.56550 * 93.37043 * 26 9 7 28 28 H 0.96999 * 119.99369 * 359.72900 * 1 2 3 29 29 H 1.09005 * 109.92301 * 294.35021 * 10 9 7 30 30 H 1.09008 * 109.92033 * 55.65062 * 10 9 7 31 31 H 1.09004 * 111.10189 * 219.69020 * 11 10 9 32 32 H 1.08997 * 110.75106 * 96.02853 * 11 10 9 33 33 H 1.08998 * 109.89664 * 64.87308 * 14 12 11 34 34 H 1.09002 * 110.51737 * 303.35985 * 14 12 11 35 35 H 1.09004 * 109.22675 * 291.86071 * 15 14 12 36 36 H 1.08999 * 109.19542 * 172.47917 * 15 14 12 37 37 H 1.08008 * 126.81343 * 359.97438 * 20 19 17 38 38 H 1.09005 * 110.06607 * 292.03270 * 25 16 15 39 39 H 1.08994 * 110.06807 * 170.46942 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 -0.0056 8 1 3.0903 -1.2022 -0.0052 9 7 1.3255 -2.3881 -0.0117 10 6 -0.1468 -2.5532 -0.0065 11 6 -0.4344 -4.0731 -0.1499 12 6 0.8683 -4.5837 -0.7861 13 1 0.9003 -4.3815 -1.8566 14 6 1.1919 -6.0413 -0.4750 15 6 2.5643 -6.3329 -1.1070 16 7 3.5523 -5.3359 -0.6841 17 6 4.7610 -5.7373 -0.2432 18 8 5.5872 -4.9137 0.1004 19 6 5.0812 -7.1730 -0.1775 20 6 5.9769 -7.7842 0.6598 21 7 5.9347 -9.0849 0.3703 22 7 5.0907 -9.2848 -0.5779 23 7 4.5497 -8.1761 -0.9451 24 1 3.8839 -8.0694 -1.6423 25 6 3.2331 -3.8939 -0.7380 26 6 1.9081 -3.7214 -0.0185 27 1 1.9989 -4.0854 1.0049 28 1 -0.4849 0.8401 0.0040 29 1 -0.5588 -2.1818 0.9319 30 1 -0.5840 -2.0134 -0.8466 31 1 -1.2853 -4.2511 -0.8075 32 1 -0.5965 -4.5293 0.8266 33 1 0.4354 -6.6912 -0.9147 34 1 1.2383 -6.2008 0.6023 35 1 2.4720 -6.3086 -2.1928 36 1 2.8983 -7.3232 -0.7973 37 1 6.5931 -7.3072 1.4077 38 1 3.1403 -3.5698 -1.7746 39 1 4.0102 -3.3197 -0.2337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042127616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:21 Heat of formation + Delta-G solvation = 114.389084 kcal Electronic energy + Delta-G solvation = -23869.376724 eV Core-core repulsion = 20429.933454 eV Total energy + Delta-G solvation = -3439.443270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.68449 -40.30941 -38.39063 -35.85784 -33.84976 -33.02083 -31.82840 -31.33454 -29.49757 -28.65995 -25.47382 -24.63456 -23.53871 -22.91190 -22.36509 -21.08050 -20.14087 -19.68943 -18.19502 -17.22589 -16.84529 -16.32739 -16.13727 -15.15594 -14.90181 -14.63225 -14.51222 -14.21954 -13.87397 -13.56333 -13.23909 -12.90837 -12.52016 -12.39759 -12.04567 -11.71417 -11.56518 -11.43661 -11.20921 -10.94122 -10.87782 -10.80339 -10.31033 -10.22253 -10.10439 -9.98632 -9.78039 -9.73127 -9.61225 -8.78653 -8.68890 -6.95297 -5.79189 -3.13991 0.70508 2.03611 2.14929 2.59567 2.94239 3.38161 3.42926 3.43853 3.92028 4.32199 4.34164 4.46720 4.68012 4.75314 4.86433 4.91339 5.09596 5.21271 5.45711 5.48991 5.58991 5.69831 5.73435 5.81440 5.86435 5.92293 5.99976 6.16846 6.22194 6.30902 6.40053 6.50909 6.57978 6.88690 7.13383 7.46024 7.51324 7.73060 7.84043 8.00596 8.14874 9.10850 9.73834 10.39291 11.32827 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.004440 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.627654 B = 6304.884128 C = 7241.280307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.081 0.919 14 C -0.117 4.117 15 C 0.087 3.913 16 N -0.597 5.597 17 C 0.587 3.413 18 O -0.511 6.511 19 C -0.053 4.053 20 C 0.026 3.974 21 N -0.269 5.269 22 N -0.057 5.057 23 N -0.379 5.379 24 H 0.453 0.547 25 C 0.117 3.883 26 C 0.155 3.845 27 H 0.027 0.973 28 H 0.254 0.746 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.204 0.796 38 H 0.077 0.923 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -15.378 -3.439 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.099 0.901 14 C -0.156 4.156 15 C -0.037 4.037 16 N -0.330 5.330 17 C 0.371 3.629 18 O -0.385 6.385 19 C -0.188 4.188 20 C -0.133 4.133 21 N -0.134 5.134 22 N -0.038 5.038 23 N -0.112 5.112 24 H 0.306 0.694 25 C -0.004 4.004 26 C 0.046 3.954 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.221 0.779 38 H 0.095 0.905 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.304 -16.153 -3.396 16.834 hybrid contribution -0.169 2.041 -0.281 2.067 sum 3.135 -14.112 -3.677 14.916 Atomic orbital electron populations 1.69928 1.04934 1.25331 1.56550 1.24786 0.95677 0.97709 1.01824 0.86215 0.78512 0.83080 0.78080 1.21580 1.21024 1.21043 1.18990 0.90415 0.82206 1.44554 0.90255 1.44154 1.01633 0.99050 1.86754 1.21577 0.83602 0.88461 1.01100 1.22741 0.95871 0.99731 0.99298 1.22414 0.97747 0.92902 1.00297 0.90065 1.21900 0.94320 0.97996 1.01388 1.22192 0.90735 0.90841 0.99891 1.48244 1.12678 1.08694 1.63422 1.16890 0.82689 0.84750 0.78550 1.90886 1.47475 1.51997 1.48104 1.22472 1.03471 0.91684 1.01130 1.23900 0.98731 0.89776 1.00904 1.74968 1.13467 1.16149 1.08830 1.78182 1.07196 1.08019 1.10452 1.46419 1.31074 1.05215 1.28456 0.69423 1.21893 0.99717 0.76836 1.01996 1.21003 0.90782 0.87972 0.95643 0.95615 0.93616 0.94341 0.92476 0.92096 0.92487 0.90395 0.90929 0.90615 0.91120 0.77942 0.90456 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.09 10.44 55.49 0.58 -25.51 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.20 9.88 -15.06 -0.15 -6.35 16 8 H 0.08 2.05 7.43 -52.48 -0.39 1.66 16 9 N -0.59 -14.06 3.35 -162.89 -0.54 -14.60 16 10 C 0.18 4.01 5.46 -1.88 -0.01 4.00 16 11 C -0.14 -2.30 6.52 -25.12 -0.16 -2.47 16 12 C -0.11 -1.70 2.64 -89.25 -0.24 -1.94 16 13 H 0.08 1.24 8.11 -51.93 -0.42 0.81 16 14 C -0.12 -1.27 5.73 -26.52 -0.15 -1.42 16 15 C 0.09 0.82 5.31 -3.53 -0.02 0.80 16 16 N -0.60 -7.92 3.01 -174.10 -0.52 -8.44 16 17 C 0.59 8.28 7.64 -12.60 -0.10 8.18 16 18 O -0.51 -9.04 16.38 5.26 0.09 -8.96 16 19 C -0.05 -0.62 6.45 -82.33 -0.53 -1.15 16 20 C 0.03 0.30 11.96 -17.35 -0.21 0.09 16 21 N -0.27 -3.39 12.35 30.47 0.38 -3.01 16 22 N -0.06 -0.65 13.35 60.35 0.81 0.16 16 23 N -0.38 -3.53 5.73 33.31 0.19 -3.34 16 24 H 0.45 2.74 6.41 -190.34 -1.22 1.52 16 25 C 0.12 1.98 5.67 -3.97 -0.02 1.96 16 26 C 0.16 2.92 2.78 -67.84 -0.19 2.73 16 27 H 0.03 0.53 7.90 -51.93 -0.41 0.12 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.04 0.97 7.79 -51.93 -0.40 0.57 16 30 H 0.06 1.44 7.19 -51.92 -0.37 1.07 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.53 3.97 -51.93 -0.21 0.33 16 37 H 0.20 1.94 8.06 -52.48 -0.42 1.51 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.88 6.76 -51.93 -0.35 1.53 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -31.70 311.56 -7.09 -38.79 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.86 Total: -0.65 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.87 Total: 4.25 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.88 Total: -54.75 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.70 -7.09 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042127616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.183 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds