Wall clock time and date at job start Fri Apr 10 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47345 * 119.99813 * 3 2 1 6 6 H 1.48505 * 109.46936 * 239.99679 * 3 2 1 7 7 C 1.38813 * 119.99776 * 180.26782 * 2 1 3 8 8 H 1.08004 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.48154 * 126.39458 * 359.68215 * 9 7 2 11 11 C 1.55354 * 107.01546 * 174.86023 * 10 9 7 12 12 C 1.53699 * 101.90971 * 337.93254 * 11 10 9 13 13 H 1.08997 * 111.70084 * 280.94135 * 12 11 10 14 14 C 1.52516 * 114.38629 * 152.67261 * 12 11 10 15 15 C 1.53886 * 106.65163 * 183.94999 * 14 12 11 16 16 N 1.46592 * 110.71540 * 52.17470 * 15 14 12 17 17 C 1.34774 * 119.75019 * 132.28457 * 16 15 14 18 18 O 1.21618 * 120.00209 * 179.51419 * 17 16 15 19 19 C 1.47240 * 120.00109 * 359.52004 * 17 16 15 20 20 C 1.37002 * 127.18856 * 206.59442 * 19 17 16 21 21 N 1.33318 * 106.37103 * 179.84139 * 20 19 17 22 22 N 1.28507 * 109.43817 * 0.42792 * 21 20 19 23 23 N 1.28709 * 110.64167 * 359.72562 * 22 21 20 24 24 H 0.96994 * 126.03988 * 179.97438 * 23 22 21 25 25 C 1.47790 * 120.49938 * 312.27314 * 16 15 14 26 26 C 1.45507 * 126.40040 * 179.97438 * 9 7 2 27 27 H 1.09002 * 109.56550 * 93.37043 * 26 9 7 28 28 H 0.96999 * 119.99369 * 359.72900 * 1 2 3 29 29 H 1.09005 * 109.92301 * 294.35021 * 10 9 7 30 30 H 1.09008 * 109.92033 * 55.65062 * 10 9 7 31 31 H 1.09004 * 111.10189 * 219.69020 * 11 10 9 32 32 H 1.08997 * 110.75106 * 96.02853 * 11 10 9 33 33 H 1.08998 * 109.89664 * 64.87308 * 14 12 11 34 34 H 1.09002 * 110.51737 * 303.35985 * 14 12 11 35 35 H 1.09004 * 109.22675 * 291.86071 * 15 14 12 36 36 H 1.08999 * 109.19542 * 172.47917 * 15 14 12 37 37 H 1.08008 * 126.81343 * 359.97438 * 20 19 17 38 38 H 1.09005 * 110.06607 * 292.03270 * 25 16 15 39 39 H 1.08994 * 110.06807 * 170.46942 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 -0.0056 8 1 3.0903 -1.2022 -0.0052 9 7 1.3255 -2.3881 -0.0117 10 6 -0.1468 -2.5532 -0.0065 11 6 -0.4344 -4.0731 -0.1499 12 6 0.8683 -4.5837 -0.7861 13 1 0.9003 -4.3815 -1.8566 14 6 1.1919 -6.0413 -0.4750 15 6 2.5643 -6.3329 -1.1070 16 7 3.5523 -5.3359 -0.6841 17 6 4.7610 -5.7373 -0.2432 18 8 5.5872 -4.9137 0.1004 19 6 5.0812 -7.1730 -0.1775 20 6 5.9769 -7.7842 0.6598 21 7 5.9347 -9.0849 0.3703 22 7 5.0907 -9.2848 -0.5779 23 7 4.5497 -8.1761 -0.9451 24 1 3.8839 -8.0694 -1.6423 25 6 3.2331 -3.8939 -0.7380 26 6 1.9081 -3.7214 -0.0185 27 1 1.9989 -4.0854 1.0049 28 1 -0.4849 0.8401 0.0040 29 1 -0.5588 -2.1818 0.9319 30 1 -0.5840 -2.0134 -0.8466 31 1 -1.2853 -4.2511 -0.8075 32 1 -0.5965 -4.5293 0.8266 33 1 0.4354 -6.6912 -0.9147 34 1 1.2383 -6.2008 0.6023 35 1 2.4720 -6.3086 -2.1928 36 1 2.8983 -7.3232 -0.7973 37 1 6.5931 -7.3072 1.4077 38 1 3.1403 -3.5698 -1.7746 39 1 4.0102 -3.3197 -0.2337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042127616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:21 Heat of formation + Delta-G solvation = 91.447143 kcal Electronic energy + Delta-G solvation = -23870.371561 eV Core-core repulsion = 20429.933454 eV Total energy + Delta-G solvation = -3440.438107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.57520 -41.50287 -39.73710 -37.16822 -34.97595 -34.49779 -33.00842 -32.65700 -30.86295 -30.20044 -26.75615 -26.29744 -24.59476 -24.00429 -23.46542 -22.09824 -21.79371 -21.02082 -19.21639 -18.64496 -18.09424 -17.46533 -17.31329 -16.72992 -16.33661 -15.79971 -15.73008 -15.41349 -15.31461 -14.94582 -14.51780 -14.10125 -13.85233 -13.67816 -13.33679 -13.18023 -13.09601 -12.75279 -12.59539 -12.42102 -12.23143 -12.05488 -11.83870 -11.77956 -11.57151 -11.45547 -11.26399 -11.06171 -10.72328 -10.68279 -9.90934 -8.91846 -7.86529 -5.21607 -0.21969 1.11259 1.26963 1.45367 1.47203 1.52738 1.55068 1.94140 2.49154 3.00451 3.32265 3.39265 3.45954 3.61241 3.79056 3.87612 3.93119 4.02779 4.15110 4.21131 4.27909 4.37582 4.55777 4.61125 4.73724 4.78144 4.85481 4.89013 5.05690 5.11152 5.18015 5.26148 5.46984 5.54501 5.57875 5.65988 5.78425 6.06522 6.18732 6.74062 7.07654 7.11371 7.76313 8.42550 9.24018 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.004440 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.627654 B = 6304.884128 C = 7241.280307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.970 3.030 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.612 5.612 10 C 0.179 3.821 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.086 0.914 14 C -0.109 4.109 15 C 0.081 3.919 16 N -0.593 5.593 17 C 0.591 3.409 18 O -0.555 6.555 19 C -0.056 4.056 20 C 0.027 3.973 21 N -0.290 5.290 22 N -0.054 5.054 23 N -0.354 5.354 24 H 0.469 0.531 25 C 0.130 3.870 26 C 0.144 3.856 27 H 0.010 0.990 28 H 0.247 0.753 29 H -0.003 1.003 30 H 0.024 0.976 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.216 0.784 38 H 0.079 0.921 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -18.201 -4.710 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.253 4.253 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.337 5.337 10 C 0.055 3.945 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.105 0.895 14 C -0.148 4.148 15 C -0.040 4.040 16 N -0.325 5.325 17 C 0.376 3.624 18 O -0.432 6.432 19 C -0.191 4.191 20 C -0.132 4.132 21 N -0.155 5.155 22 N -0.036 5.036 23 N -0.089 5.089 24 H 0.325 0.675 25 C 0.007 3.993 26 C 0.037 3.963 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.334 -19.048 -4.693 19.899 hybrid contribution -0.179 2.879 0.143 2.888 sum 3.155 -16.169 -4.550 17.091 Atomic orbital electron populations 1.70137 1.06103 1.25288 1.58147 1.25528 0.96488 1.00662 1.02636 0.85285 0.77280 0.79433 0.78175 1.21937 1.20857 1.20174 1.19297 0.90724 0.83688 1.43036 0.90361 1.44411 1.02492 1.00292 1.86529 1.21387 0.82952 0.92631 0.97574 1.22609 0.97832 0.94795 1.00850 1.22348 0.94567 0.94990 0.99685 0.89529 1.21896 0.96070 0.95179 1.01610 1.22551 0.88963 0.90543 1.01988 1.48213 1.13410 1.07783 1.63090 1.17097 0.82316 0.85390 0.77590 1.90870 1.48900 1.53410 1.50015 1.21976 1.04376 0.90541 1.02177 1.24205 0.98471 0.89580 1.00946 1.74996 1.14329 1.16550 1.09616 1.78142 1.07001 1.08340 1.10150 1.46355 1.30547 1.04027 1.28017 0.67498 1.21456 0.97521 0.79095 1.01201 1.21165 0.93200 0.86312 0.95669 0.97236 0.94409 0.98485 0.95769 0.89465 0.91399 0.86182 0.91591 0.87074 0.88725 0.76733 0.90263 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.06 10.44 21.65 0.23 -55.83 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 3 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.24 -13.07 9.88 84.03 0.83 -12.24 16 8 H 0.08 4.19 7.43 -2.91 -0.02 4.16 16 9 N -0.61 -29.97 3.35 -669.26 -2.24 -32.20 16 10 C 0.18 8.38 5.46 86.87 0.47 8.85 16 11 C -0.12 -3.87 6.52 31.64 0.21 -3.67 16 12 C -0.10 -2.62 2.64 -9.91 -0.03 -2.65 16 13 H 0.09 2.33 8.11 -2.39 -0.02 2.31 16 14 C -0.11 -1.84 5.73 30.73 0.18 -1.66 16 15 C 0.08 1.15 5.31 86.66 0.46 1.61 16 16 N -0.59 -14.44 3.01 -822.99 -2.48 -16.92 16 17 C 0.59 15.78 7.64 86.61 0.66 16.44 16 18 O -0.56 -19.72 16.38 -4.09 -0.07 -19.78 16 19 C -0.06 -1.16 6.45 40.41 0.26 -0.90 16 20 C 0.03 0.58 11.96 84.18 1.01 1.59 16 21 N -0.29 -6.64 12.35 -57.50 -0.71 -7.35 16 22 N -0.05 -1.07 13.35 37.02 0.49 -0.58 16 23 N -0.35 -5.25 5.73 -48.52 -0.28 -5.53 16 24 H 0.47 3.36 6.41 -219.91 -1.41 1.95 16 25 C 0.13 4.36 5.67 85.72 0.49 4.85 16 26 C 0.14 5.39 2.78 45.58 0.13 5.52 16 27 H 0.01 0.41 7.90 -2.39 -0.02 0.39 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.00 -0.17 7.79 -2.38 -0.02 -0.19 16 30 H 0.02 1.27 7.19 -2.38 -0.02 1.25 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.27 7.97 -2.39 -0.02 1.25 16 35 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.10 0.92 3.97 -2.39 -0.01 0.92 16 37 H 0.22 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.07 2.62 6.76 -2.39 -0.02 2.61 16 Total: -1.00 -73.80 311.56 1.79 -72.02 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -0.32 Total: 3.58 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.13 Total: 14.84 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -4.98 Total: -118.41 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.07 Total: -19.78 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.80 1.79 -72.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042127616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.466 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds