Wall clock time and date at job start Fri Apr 10 2020 14:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48503 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47247 * 300.00248 * 3 2 1 6 6 H 1.48502 * 109.46970 * 60.00560 * 3 2 1 7 7 C 1.38807 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00756 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99727 * 359.97438 * 7 2 1 10 10 C 1.47101 * 125.64502 * 180.02562 * 9 7 2 11 11 C 1.55030 * 107.12765 * 180.19546 * 10 9 7 12 12 H 1.09000 * 112.15881 * 216.41111 * 11 10 9 13 13 C 1.52959 * 107.60174 * 92.89925 * 11 10 9 14 14 C 1.52723 * 110.88237 * 194.03571 * 13 11 10 15 15 C 1.53428 * 107.91701 * 64.54239 * 14 13 11 16 16 N 1.46794 * 107.31797 * 300.85795 * 15 14 13 17 17 C 1.34778 * 119.52129 * 232.83190 * 16 15 14 18 18 O 1.21622 * 119.99992 * 179.83356 * 17 16 15 19 19 C 1.47232 * 120.00001 * 359.56157 * 17 16 15 20 20 C 1.37008 * 127.18944 * 151.95777 * 19 17 16 21 21 N 1.33325 * 106.37075 * 179.85039 * 20 19 17 22 22 N 1.28509 * 109.43672 * 0.42812 * 21 20 19 23 23 N 1.28716 * 110.64229 * 359.72596 * 22 21 20 24 24 H 0.97002 * 126.03345 * 180.02562 * 23 22 21 25 25 C 1.45025 * 120.95874 * 52.55461 * 16 15 14 26 26 H 1.09000 * 109.86841 * 192.80950 * 25 16 15 27 27 C 1.47678 * 125.64848 * 0.04179 * 9 7 2 28 28 H 0.97007 * 119.99735 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.90688 * 60.82491 * 10 9 7 30 30 H 1.09003 * 110.06234 * 299.65058 * 10 9 7 31 31 H 1.09009 * 109.19551 * 314.39858 * 13 11 10 32 32 H 1.09004 * 109.19354 * 73.71969 * 13 11 10 33 33 H 1.08999 * 109.67670 * 183.56749 * 14 13 11 34 34 H 1.09000 * 109.67651 * 304.07581 * 14 13 11 35 35 H 1.08998 * 109.26612 * 181.80459 * 15 14 13 36 36 H 1.09004 * 110.64041 * 60.68599 * 15 14 13 37 37 H 1.08002 * 126.81330 * 359.97438 * 20 19 17 38 38 H 1.09004 * 110.44286 * 84.71468 * 27 9 7 39 39 H 1.08998 * 110.44850 * 322.16895 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9321 -3.7281 -0.0005 11 6 0.7706 -4.7550 -0.0056 12 1 0.9989 -5.6368 0.5931 13 6 0.4775 -5.1146 -1.4631 14 6 -0.8596 -5.8423 -1.5860 15 6 -1.9676 -4.8682 -1.1647 16 7 -1.6888 -4.4606 0.2177 17 6 -2.6513 -4.5832 1.1532 18 8 -2.4287 -4.2510 2.3018 19 6 -3.9740 -5.1136 0.7834 20 6 -4.8510 -5.7885 1.5912 21 7 -5.9143 -6.0710 0.8381 22 7 -5.7269 -5.6228 -0.3517 23 7 -4.5826 -5.0406 -0.4423 24 1 -4.2159 -4.6235 -1.2376 25 6 -0.3908 -3.9336 0.5927 26 1 -0.3028 -3.9036 1.6787 27 6 -0.1441 -2.5333 -0.0009 28 1 -0.4850 0.8401 0.0004 29 1 2.5403 -3.8602 0.8943 30 1 2.5477 -3.8599 -0.8904 31 1 0.4446 -4.2016 -2.0579 32 1 1.2716 -5.7592 -1.8399 33 1 -1.0191 -6.1447 -2.6209 34 1 -0.8591 -6.7221 -0.9425 35 1 -2.9307 -5.3762 -1.2135 36 1 -1.9767 -3.9926 -1.8139 37 1 -4.7100 -6.0397 2.6320 38 1 -0.5320 -2.4773 -1.0180 39 1 -0.6026 -1.7680 0.6253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050083694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:14 Heat of formation + Delta-G solvation = 112.524790 kcal Electronic energy + Delta-G solvation = -24187.013284 eV Core-core repulsion = 20747.489172 eV Total energy + Delta-G solvation = -3439.524112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.57039 -40.40895 -38.11132 -35.73328 -33.85504 -32.93036 -32.11708 -31.46245 -29.47380 -27.65299 -25.87419 -24.91313 -23.42682 -23.23993 -22.19240 -21.24138 -20.22134 -19.15079 -17.86397 -17.22673 -17.03437 -16.39107 -15.94341 -15.06223 -14.91602 -14.62512 -14.36341 -14.15397 -14.04112 -13.48413 -13.13942 -12.67498 -12.40537 -12.29381 -12.20601 -11.82541 -11.46589 -11.26948 -11.20860 -10.96898 -10.89854 -10.77542 -10.43636 -10.38432 -10.08074 -10.00417 -9.84555 -9.79144 -9.61245 -8.74829 -8.44641 -6.94831 -5.75659 -3.17492 0.83225 2.13595 2.28012 2.81713 3.03957 3.34772 3.40577 3.43038 4.04218 4.40107 4.42172 4.47406 4.79011 4.86507 4.90451 5.03337 5.12787 5.22734 5.28795 5.41357 5.50258 5.69891 5.74402 5.81986 5.83243 5.91965 6.03203 6.08608 6.24165 6.38694 6.47155 6.57007 6.63758 6.76071 7.16850 7.41000 7.53205 7.72959 8.01650 8.12154 8.22587 9.10358 9.71853 10.34354 11.29021 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.004813 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.793210 B = 5816.233879 C = 6436.959015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.108 4.108 12 H 0.078 0.922 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.085 3.915 16 N -0.578 5.578 17 C 0.586 3.414 18 O -0.511 6.511 19 C -0.049 4.049 20 C 0.022 3.978 21 N -0.270 5.270 22 N -0.058 5.058 23 N -0.378 5.378 24 H 0.454 0.546 25 C 0.115 3.885 26 H 0.102 0.898 27 C 0.156 3.844 28 H 0.252 0.748 29 H 0.026 0.974 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.203 0.797 38 H 0.015 0.985 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -12.774 -3.619 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.013 3.987 11 C -0.128 4.128 12 H 0.097 0.903 13 C -0.149 4.149 14 C -0.167 4.167 15 C -0.039 4.039 16 N -0.310 5.310 17 C 0.370 3.630 18 O -0.384 6.384 19 C -0.183 4.183 20 C -0.137 4.137 21 N -0.135 5.135 22 N -0.040 5.040 23 N -0.110 5.110 24 H 0.307 0.693 25 C 0.012 3.988 26 H 0.120 0.880 27 C 0.030 3.970 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.220 0.780 38 H 0.033 0.967 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.033 -12.783 -3.639 14.596 hybrid contribution 1.642 1.412 -0.159 2.172 sum -4.391 -11.370 -3.798 12.767 Atomic orbital electron populations 1.69790 1.04953 1.24857 1.57409 1.24793 0.95718 0.97823 1.02122 0.85991 0.78685 0.83468 0.77296 1.20446 1.21745 1.21637 1.19126 0.90566 0.82178 1.43387 0.90160 1.44417 1.01342 0.99954 1.87028 1.21518 0.93405 0.85410 0.98350 1.22449 0.96469 0.97890 0.95977 0.90337 1.21510 0.95881 1.00746 0.96763 1.21846 0.95413 0.97864 1.01550 1.22308 0.98863 0.99088 0.83636 1.47373 1.13380 1.61998 1.08213 1.16893 0.81745 0.78762 0.85625 1.90878 1.80122 1.48663 1.18723 1.22478 0.99114 1.09910 0.86832 1.23857 0.89143 0.99035 1.01662 1.74947 1.22686 1.18867 0.97037 1.78174 1.00292 1.09611 1.15922 1.46428 1.13533 1.39188 1.11865 0.69292 1.22222 0.78867 0.96417 1.01340 0.87954 1.21993 0.85272 0.91220 0.98494 0.93682 0.95651 0.95326 0.90668 0.91898 0.90684 0.91270 0.90987 0.89500 0.78049 0.96709 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 10.10 55.49 0.56 -25.61 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.02 10.28 -15.06 -0.15 -6.17 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.52 3.40 -169.88 -0.58 -15.10 16 10 C 0.14 2.69 6.63 -2.64 -0.02 2.67 16 11 C -0.11 -1.70 3.56 -88.88 -0.32 -2.02 16 12 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.46 4.67 -26.89 -0.13 -1.59 16 14 C -0.13 -1.33 6.12 -26.65 -0.16 -1.49 16 15 C 0.08 0.94 5.25 -3.66 -0.02 0.92 16 16 N -0.58 -8.61 2.73 -166.58 -0.45 -9.06 16 17 C 0.59 9.17 7.62 -12.61 -0.10 9.08 16 18 O -0.51 -9.83 16.34 5.26 0.09 -9.74 16 19 C -0.05 -0.63 6.43 -82.33 -0.53 -1.16 16 20 C 0.02 0.27 11.97 -17.35 -0.21 0.07 16 21 N -0.27 -3.66 12.35 30.48 0.38 -3.28 16 22 N -0.06 -0.74 13.35 60.35 0.81 0.07 16 23 N -0.38 -4.14 5.71 33.31 0.19 -3.95 16 24 H 0.45 3.72 6.47 -190.33 -1.23 2.49 16 25 C 0.12 2.09 3.04 -67.47 -0.20 1.89 16 26 H 0.10 2.09 6.95 -51.93 -0.36 1.73 16 27 C 0.16 3.55 5.07 -2.84 -0.01 3.53 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 31 H 0.07 1.16 7.25 -51.92 -0.38 0.78 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.63 3.87 -51.93 -0.20 0.43 16 36 H 0.09 0.96 7.62 -51.93 -0.40 0.56 16 37 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.02 0.35 6.96 -51.93 -0.36 -0.01 16 39 H 0.11 2.92 5.94 -51.93 -0.31 2.62 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -31.77 308.71 -7.05 -38.82 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.72 Total: 1.25 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.94 Total: 5.38 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.90 Total: -56.93 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.77 -7.05 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050083694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.344 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds