Wall clock time and date at job start Fri Apr 10 2020 14:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47059 * 240.00059 * 3 2 1 5 5 H 1.48506 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47253 * 119.99928 * 3 2 1 7 7 C 1.40053 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00199 * 173.70188 * 7 2 1 9 9 C 1.41270 * 120.00068 * 353.97152 * 7 2 1 10 10 C 1.40718 * 120.15871 * 185.85917 * 9 7 2 11 11 N 1.31904 * 119.92873 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27171 * 359.97438 * 11 10 9 13 13 C 1.39920 * 120.32117 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.96703 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.52997 * 109.47088 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47458 * 179.97438 * 16 15 14 18 18 C 1.46002 * 118.53632 * 89.99560 * 17 16 15 19 19 C 1.52981 * 110.04099 * 161.81977 * 18 17 16 20 20 N 1.47191 * 108.72933 * 50.29873 * 19 18 17 21 21 C 1.46901 * 110.17202 * 290.99516 * 20 19 18 22 22 C 1.33723 * 118.53604 * 269.73481 * 17 16 15 23 23 O 1.21284 * 118.62438 * 1.70726 * 22 17 16 24 24 N 1.32257 * 120.06333 * 359.74979 * 13 12 11 25 25 H 0.97005 * 120.00305 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.03787 * 359.95401 * 10 9 7 27 27 H 1.08002 * 119.83465 * 179.97438 * 12 11 10 28 28 H 0.97002 * 119.99759 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.46923 * 299.99318 * 15 14 13 30 30 H 1.08993 * 109.47267 * 59.99461 * 15 14 13 31 31 H 1.08996 * 109.47185 * 299.99960 * 16 15 14 32 32 H 1.09006 * 109.47336 * 59.99688 * 16 15 14 33 33 H 1.08996 * 109.37963 * 281.99784 * 18 17 16 34 34 H 1.09005 * 109.37297 * 41.64753 * 18 17 16 35 35 H 1.09003 * 109.59497 * 170.06469 * 19 18 17 36 36 H 1.08996 * 109.60123 * 290.36857 * 19 18 17 37 37 H 1.00907 * 111.00117 * 167.63471 * 20 19 18 38 38 H 1.08997 * 109.38898 * 170.45561 * 21 20 19 39 39 H 1.08998 * 109.38954 * 290.24960 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2158 -0.1021 9 6 1.3071 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3546 -4.7802 0.3751 12 6 0.0330 -4.7870 0.3799 13 6 -0.6801 -3.5894 0.2576 14 7 -2.0682 -3.6052 0.2630 15 6 -2.7858 -4.8754 0.3973 16 6 -4.2932 -4.6143 0.3749 17 7 -5.0109 -5.8845 0.5085 18 6 -5.3486 -6.3572 1.8480 19 6 -6.4504 -7.4154 1.7682 20 7 -6.0617 -8.4284 0.7735 21 6 -6.0946 -7.8510 -0.5769 22 6 -5.3321 -6.5567 -0.6019 23 8 -4.9896 -6.1049 -1.6741 24 7 -0.0329 -2.4419 0.1413 25 1 -0.4851 0.8401 -0.0004 26 1 3.0931 -3.6426 0.2510 27 1 -0.4991 -5.7217 0.4788 28 1 -2.5630 -2.7751 0.1786 29 1 -2.5183 -5.5330 -0.4298 30 1 -2.5134 -5.3486 1.3406 31 1 -4.5605 -3.9568 1.2021 32 1 -4.5660 -4.1408 -0.5683 33 1 -4.4632 -6.7913 2.3123 34 1 -5.6962 -5.5180 2.4506 35 1 -6.5741 -7.8886 2.7424 36 1 -7.3873 -6.9460 1.4683 37 1 -6.6565 -9.2413 0.8337 38 1 -5.6460 -8.5517 -1.2810 39 1 -7.1288 -7.6616 -0.8643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161024861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:57 Heat of formation + Delta-G solvation = 26.904368 kcal Electronic energy + Delta-G solvation = -22583.788585 eV Core-core repulsion = 19140.551693 eV Total energy + Delta-G solvation = -3443.236892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63611 -38.83689 -36.98676 -36.18117 -34.47238 -33.80319 -31.65773 -30.36137 -29.73839 -27.91853 -25.81512 -25.64787 -23.71829 -22.73873 -22.05308 -20.87495 -18.69220 -17.55796 -17.42732 -17.06230 -16.46350 -16.28058 -15.34541 -15.07113 -15.02288 -14.84247 -14.56301 -14.42051 -14.03723 -13.71454 -13.35192 -12.98583 -12.88525 -12.62432 -12.18741 -11.92447 -11.81431 -11.45366 -11.36776 -11.20289 -11.16890 -10.64963 -10.38871 -10.03657 -9.80878 -9.57054 -9.33601 -9.12783 -8.89431 -8.30707 -7.34335 -6.67550 -6.40610 -4.61545 2.42589 2.69228 2.75895 3.05829 3.08271 3.16386 3.32733 3.60403 3.90404 4.15189 4.24241 4.42530 4.67833 4.76020 4.84467 4.90983 5.05246 5.11378 5.20822 5.27195 5.52424 5.55268 5.89889 5.98252 6.08492 6.13407 6.19906 6.30525 6.39301 6.57987 6.70105 6.84360 7.07940 7.17987 7.22955 7.64535 7.96750 8.00175 8.08179 8.47470 8.60105 8.89948 9.46691 10.04970 10.23102 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003147 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.307137 B = 8896.422702 C = 9331.248400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.090 0.910 9 C 0.246 3.754 10 C -0.107 4.107 11 N -0.408 5.408 12 C -0.168 4.168 13 C 0.375 3.625 14 N -0.730 5.730 15 C 0.130 3.870 16 C 0.101 3.899 17 N -0.597 5.597 18 C 0.115 3.885 19 C 0.038 3.962 20 N -0.681 5.681 21 C 0.043 3.957 22 C 0.517 3.483 23 O -0.541 6.541 24 N -0.509 5.509 25 H 0.274 0.726 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.396 0.604 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.353 0.647 38 H 0.115 0.885 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 -9.566 4.730 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.278 4.278 11 N -0.119 5.119 12 C -0.329 4.329 13 C 0.132 3.868 14 N -0.368 5.368 15 C 0.003 3.997 16 C -0.022 4.022 17 N -0.331 5.331 18 C -0.009 4.009 19 C -0.092 4.092 20 N -0.315 5.315 21 C -0.088 4.088 22 C 0.304 3.696 23 O -0.417 6.417 24 N -0.235 5.235 25 H 0.085 0.915 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.231 0.769 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.172 0.828 38 H 0.133 0.867 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.619 -9.349 4.272 18.698 hybrid contribution -0.865 1.043 -0.064 1.356 sum -16.484 -8.307 4.208 18.932 Atomic orbital electron populations 1.70104 1.07352 1.28028 1.27654 1.26125 0.94930 1.01273 0.93488 0.86328 0.80067 0.80073 0.80034 1.18803 1.20253 1.18790 1.19580 0.94877 0.89257 1.41316 0.89219 1.19087 0.87676 0.93220 0.88216 1.22914 0.98959 0.89324 1.16567 1.67506 1.08223 1.30190 1.06010 1.21910 0.90712 0.95796 1.24529 1.19445 0.84848 0.92027 0.90504 1.43884 1.02714 1.07353 1.82799 1.21315 0.90021 0.87339 1.01008 1.21652 0.91609 0.84893 1.04064 1.47289 1.56541 1.22856 1.06390 1.21596 0.98793 0.96967 0.83506 1.22342 0.96150 0.93300 0.97413 1.60794 1.58837 1.08658 1.03170 1.22111 0.99837 0.94460 0.92438 1.20105 0.79855 0.85872 0.83720 1.90790 1.53832 1.68150 1.28925 1.69024 1.08363 1.22310 1.23834 0.91493 0.85263 0.86383 0.76949 0.92373 0.92814 0.89883 0.88995 0.90427 0.90063 0.88446 0.93855 0.82824 0.86716 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.60 11.51 55.55 0.64 -17.96 16 2 C 0.07 1.71 5.49 -17.34 -0.10 1.62 16 3 Si 0.91 18.32 29.56 -169.99 -5.03 13.29 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.42 -11.14 9.15 -37.75 -0.35 -11.48 16 8 H 0.09 2.20 7.86 -52.48 -0.41 1.78 16 9 C 0.25 6.94 6.54 -84.83 -0.55 6.39 16 10 C -0.11 -2.88 10.97 -16.58 -0.18 -3.06 16 11 N -0.41 -10.88 10.47 -12.11 -0.13 -11.00 16 12 C -0.17 -4.26 10.49 -16.78 -0.18 -4.43 16 13 C 0.38 9.50 7.66 -155.01 -1.19 8.31 16 14 N -0.73 -14.88 5.72 -60.28 -0.34 -15.22 16 15 C 0.13 2.15 5.22 -4.04 -0.02 2.13 16 16 C 0.10 1.32 5.39 -4.04 -0.02 1.30 16 17 N -0.60 -6.84 2.83 -174.59 -0.49 -7.33 16 18 C 0.11 0.90 6.62 -4.32 -0.03 0.87 16 19 C 0.04 0.21 6.62 -3.67 -0.02 0.19 16 20 N -0.68 -4.63 6.93 -115.09 -0.80 -5.43 16 21 C 0.04 0.37 6.68 -5.20 -0.03 0.34 16 22 C 0.52 6.68 7.56 -11.68 -0.09 6.59 16 23 O -0.54 -9.37 16.33 5.55 0.09 -9.28 16 24 N -0.51 -14.29 8.09 -10.14 -0.08 -14.37 16 25 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 26 H 0.13 3.14 8.06 -52.49 -0.42 2.72 16 27 H 0.12 2.72 6.70 -52.49 -0.35 2.37 16 28 H 0.40 7.79 8.60 -40.82 -0.35 7.44 16 29 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 31 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 32 H 0.09 1.35 7.25 -51.93 -0.38 0.98 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.50 7.98 -51.93 -0.41 0.09 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 37 H 0.35 1.48 8.90 -39.29 -0.35 1.13 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -34.32 329.23 -9.10 -43.42 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.16 Total: 10.15 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -2.76 Total: 8.76 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.21 Total: -71.31 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.32 -9.10 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161024861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.324 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds