Wall clock time and date at job start Fri Apr 10 2020 14:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47059 * 240.00059 * 3 2 1 5 5 H 1.48506 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47253 * 119.99928 * 3 2 1 7 7 C 1.40053 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00199 * 173.70188 * 7 2 1 9 9 C 1.41270 * 120.00068 * 353.97152 * 7 2 1 10 10 C 1.40718 * 120.15871 * 185.85917 * 9 7 2 11 11 N 1.31904 * 119.92873 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27171 * 359.97438 * 11 10 9 13 13 C 1.39920 * 120.32117 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.96703 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.52997 * 109.47088 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47458 * 179.97438 * 16 15 14 18 18 C 1.46002 * 118.53632 * 89.99560 * 17 16 15 19 19 C 1.52981 * 110.04099 * 161.81977 * 18 17 16 20 20 N 1.47191 * 108.72933 * 50.29873 * 19 18 17 21 21 C 1.46901 * 110.17202 * 290.99516 * 20 19 18 22 22 C 1.33723 * 118.53604 * 269.73481 * 17 16 15 23 23 O 1.21284 * 118.62438 * 1.70726 * 22 17 16 24 24 N 1.32257 * 120.06333 * 359.74979 * 13 12 11 25 25 H 0.97005 * 120.00305 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.03787 * 359.95401 * 10 9 7 27 27 H 1.08002 * 119.83465 * 179.97438 * 12 11 10 28 28 H 0.97002 * 119.99759 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.46923 * 299.99318 * 15 14 13 30 30 H 1.08993 * 109.47267 * 59.99461 * 15 14 13 31 31 H 1.08996 * 109.47185 * 299.99960 * 16 15 14 32 32 H 1.09006 * 109.47336 * 59.99688 * 16 15 14 33 33 H 1.08996 * 109.37963 * 281.99784 * 18 17 16 34 34 H 1.09005 * 109.37297 * 41.64753 * 18 17 16 35 35 H 1.09003 * 109.59497 * 170.06469 * 19 18 17 36 36 H 1.08996 * 109.60123 * 290.36857 * 19 18 17 37 37 H 1.00907 * 111.00117 * 167.63471 * 20 19 18 38 38 H 1.08997 * 109.38898 * 170.45561 * 21 20 19 39 39 H 1.08998 * 109.38954 * 290.24960 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2158 -0.1021 9 6 1.3071 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3546 -4.7802 0.3751 12 6 0.0330 -4.7870 0.3799 13 6 -0.6801 -3.5894 0.2576 14 7 -2.0682 -3.6052 0.2630 15 6 -2.7858 -4.8754 0.3973 16 6 -4.2932 -4.6143 0.3749 17 7 -5.0109 -5.8845 0.5085 18 6 -5.3486 -6.3572 1.8480 19 6 -6.4504 -7.4154 1.7682 20 7 -6.0617 -8.4284 0.7735 21 6 -6.0946 -7.8510 -0.5769 22 6 -5.3321 -6.5567 -0.6019 23 8 -4.9896 -6.1049 -1.6741 24 7 -0.0329 -2.4419 0.1413 25 1 -0.4851 0.8401 -0.0004 26 1 3.0931 -3.6426 0.2510 27 1 -0.4991 -5.7217 0.4788 28 1 -2.5630 -2.7751 0.1786 29 1 -2.5183 -5.5330 -0.4298 30 1 -2.5134 -5.3486 1.3406 31 1 -4.5605 -3.9568 1.2021 32 1 -4.5660 -4.1408 -0.5683 33 1 -4.4632 -6.7913 2.3123 34 1 -5.6962 -5.5180 2.4506 35 1 -6.5741 -7.8886 2.7424 36 1 -7.3873 -6.9460 1.4683 37 1 -6.6565 -9.2413 0.8337 38 1 -5.6460 -8.5517 -1.2810 39 1 -7.1288 -7.6616 -0.8643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161024861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:56 Heat of formation + Delta-G solvation = -0.480815 kcal Electronic energy + Delta-G solvation = -22584.976096 eV Core-core repulsion = 19140.551693 eV Total energy + Delta-G solvation = -3444.424403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56998 -40.79524 -37.86650 -37.52686 -35.90403 -35.52449 -33.56008 -31.75298 -30.75935 -29.34722 -27.77346 -26.57462 -24.74863 -24.31398 -23.46902 -22.70113 -19.53545 -19.42046 -18.55263 -17.98895 -17.92644 -17.35561 -17.05492 -16.60416 -16.58040 -15.92077 -15.80996 -15.64031 -15.32682 -14.85263 -14.71391 -14.62589 -14.22112 -13.59003 -13.28627 -13.24747 -13.05449 -12.89750 -12.76572 -12.66050 -12.53635 -12.22112 -12.04735 -11.72792 -11.40093 -11.34335 -11.05481 -10.25636 -9.89960 -9.59978 -9.34863 -8.54926 -8.34107 -6.65369 0.82307 1.22979 1.42931 1.43874 1.55529 1.59032 1.75207 2.21792 2.61959 2.82621 3.10666 3.46722 3.81748 3.83656 3.87573 3.97220 4.16179 4.18105 4.29121 4.33713 4.41873 4.44836 4.54427 4.57203 4.74715 4.80085 4.82882 4.92037 4.96734 5.13599 5.18943 5.28241 5.68000 5.70419 6.07944 6.17229 6.31227 6.36995 6.62843 6.65163 6.95711 7.02358 7.43204 8.04674 8.34773 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003147 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.307137 B = 8896.422702 C = 9331.248400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.439 4.439 8 H 0.103 0.897 9 C 0.214 3.786 10 C -0.130 4.130 11 N -0.417 5.417 12 C -0.181 4.181 13 C 0.368 3.632 14 N -0.719 5.719 15 C 0.136 3.864 16 C 0.111 3.889 17 N -0.594 5.594 18 C 0.104 3.896 19 C 0.041 3.959 20 N -0.689 5.689 21 C 0.052 3.948 22 C 0.506 3.494 23 O -0.597 6.597 24 N -0.538 5.538 25 H 0.283 0.717 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.399 0.601 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.053 0.947 37 H 0.370 0.630 38 H 0.114 0.886 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 -9.207 6.069 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.202 4.202 3 Si 0.815 3.185 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.121 0.879 9 C 0.087 3.913 10 C -0.300 4.300 11 N -0.129 5.129 12 C -0.343 4.343 13 C 0.123 3.877 14 N -0.355 5.355 15 C 0.011 3.989 16 C -0.013 4.013 17 N -0.326 5.326 18 C -0.018 4.018 19 C -0.088 4.088 20 N -0.325 5.325 21 C -0.080 4.080 22 C 0.295 3.705 23 O -0.477 6.477 24 N -0.266 5.266 25 H 0.094 0.906 26 H 0.162 0.838 27 H 0.154 0.846 28 H 0.234 0.766 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.071 0.929 37 H 0.192 0.808 38 H 0.132 0.868 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.867 -9.050 5.655 19.960 hybrid contribution -0.566 0.880 -0.452 1.140 sum -17.434 -8.170 5.202 19.944 Atomic orbital electron populations 1.70185 1.09128 1.29729 1.27202 1.27135 0.95814 1.04851 0.92360 0.85055 0.78530 0.74609 0.80293 1.18084 1.19214 1.18052 1.20055 0.95805 0.89874 1.41389 0.87902 1.19556 0.88317 0.94368 0.89098 1.23126 0.99756 0.89222 1.17869 1.67494 1.08905 1.30294 1.06165 1.22217 0.90639 0.96662 1.24754 1.19753 0.86652 0.91569 0.89747 1.43986 1.01163 1.08953 1.81402 1.21402 0.92037 0.85268 1.00241 1.21465 0.89215 0.86365 1.04293 1.47447 1.55383 1.21979 1.07760 1.21949 0.99655 0.98619 0.81531 1.22413 0.95376 0.92600 0.98417 1.60758 1.59901 1.09555 1.02242 1.21998 1.00060 0.92111 0.93787 1.20969 0.79465 0.86929 0.83141 1.90760 1.56223 1.69748 1.30988 1.69044 1.08681 1.23465 1.25431 0.90590 0.83760 0.84571 0.76558 0.94932 0.91811 0.87005 0.90936 0.90883 0.87817 0.85698 0.92861 0.80820 0.86806 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.94 11.51 21.84 0.25 -38.69 16 2 C 0.02 1.10 5.49 85.30 0.47 1.57 16 3 Si 1.00 36.79 29.56 68.60 2.03 38.81 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.44 -23.63 9.15 23.46 0.21 -23.41 16 8 H 0.10 5.04 7.86 -2.91 -0.02 5.02 16 9 C 0.21 12.37 6.54 40.16 0.26 12.63 16 10 C -0.13 -7.14 10.97 85.29 0.94 -6.21 16 11 N -0.42 -22.66 10.47 -192.23 -2.01 -24.67 16 12 C -0.18 -9.33 10.49 85.05 0.89 -8.43 16 13 C 0.37 19.03 7.66 133.36 1.02 20.05 16 14 N -0.72 -29.70 5.72 -344.64 -1.97 -31.67 16 15 C 0.14 4.53 5.22 86.38 0.45 4.98 16 16 C 0.11 2.83 5.39 86.38 0.47 3.30 16 17 N -0.59 -12.96 2.83 -825.27 -2.33 -15.29 16 18 C 0.10 1.38 6.62 86.47 0.57 1.95 16 19 C 0.04 0.33 6.62 86.24 0.57 0.90 16 20 N -0.69 -7.56 6.93 -518.05 -3.59 -11.15 16 21 C 0.05 0.82 6.68 85.41 0.57 1.39 16 22 C 0.51 12.92 7.56 87.68 0.66 13.58 16 23 O -0.60 -21.40 16.33 -3.04 -0.05 -21.45 16 24 N -0.54 -30.96 8.09 -186.01 -1.51 -32.46 16 25 H 0.28 13.32 8.29 -92.70 -0.77 12.56 16 26 H 0.15 7.17 8.06 -2.91 -0.02 7.15 16 27 H 0.14 6.34 6.70 -2.91 -0.02 6.32 16 28 H 0.40 15.92 8.60 -92.71 -0.80 15.13 16 29 H 0.03 1.26 7.93 -2.38 -0.02 1.24 16 30 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 31 H 0.11 2.22 7.92 -2.39 -0.02 2.20 16 32 H 0.07 2.18 7.25 -2.38 -0.02 2.16 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 0.92 7.98 -2.38 -0.02 0.90 16 35 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16 36 H 0.05 0.36 8.08 -2.39 -0.02 0.34 16 37 H 0.37 1.96 8.90 -89.69 -0.80 1.17 16 38 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.85 329.23 -2.59 -79.44 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.50 Total: 34.83 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 7.09 Total: 22.31 kcal Atomic # 7 Polarization: -142.77 SS G_CDS: -11.16 Total: -153.93 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.81 kcal Total: -76.85 -2.59 -79.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161024861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.958 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds