Wall clock time and date at job start Fri Apr 10 2020 14:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00511 * 2 1 4 4 H 1.48497 * 109.47106 * 270.00152 * 3 2 1 5 5 H 1.48506 * 109.47031 * 29.99808 * 3 2 1 6 6 H 1.48492 * 109.47551 * 149.99789 * 3 2 1 7 7 C 1.37879 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99635 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47024 * 184.99171 * 9 7 2 11 11 C 1.46954 * 110.99736 * 295.18897 * 10 9 7 12 12 C 1.53057 * 109.36815 * 183.18909 * 11 10 9 13 13 N 1.46964 * 109.36041 * 301.60427 * 12 11 10 14 14 C 1.38426 * 110.99736 * 183.18684 * 13 12 11 15 15 N 1.32595 * 119.13775 * 359.97438 * 14 13 12 16 16 C 1.32116 * 120.95800 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.24446 * 0.27493 * 16 15 14 18 18 C 1.39476 * 118.42014 * 359.43998 * 17 16 15 19 19 C 1.48467 * 120.49928 * 180.30270 * 18 17 16 20 20 N 1.34785 * 119.99274 * 180.25823 * 19 18 17 21 21 O 1.21473 * 120.00475 * 0.26300 * 19 18 17 22 22 N 1.32258 * 119.13850 * 179.97438 * 14 13 12 23 23 C 1.46955 * 110.88169 * 59.31365 * 13 12 11 24 24 C 1.46956 * 111.00289 * 58.98887 * 10 9 7 25 25 H 0.96998 * 119.99445 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47445 * 64.98748 * 9 7 2 27 27 H 1.09004 * 109.47138 * 304.98369 * 9 7 2 28 28 H 1.09004 * 109.49282 * 63.22130 * 11 10 9 29 29 H 1.09004 * 109.49441 * 303.15797 * 11 10 9 30 30 H 1.08993 * 109.49150 * 181.63610 * 12 11 10 31 31 H 1.08996 * 109.50383 * 61.57250 * 12 11 10 32 32 H 1.07996 * 120.37846 * 179.97438 * 16 15 14 33 33 H 1.07999 * 120.79152 * 179.72455 * 17 16 15 34 34 H 0.96998 * 120.00216 * 0.02562 * 20 19 18 35 35 H 0.97006 * 119.99497 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.48546 * 60.64868 * 23 13 12 37 37 H 1.08996 * 109.48489 * 180.70966 * 23 13 12 38 38 H 1.08999 * 109.48513 * 296.78052 * 24 10 9 39 39 H 1.08998 * 109.48856 * 56.84490 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 4.0011 -2.5740 -0.1189 11 6 3.6256 -3.3702 1.0578 12 6 4.2205 -4.7747 0.9312 13 7 3.7302 -5.4020 -0.3041 14 6 4.1915 -6.7022 -0.4171 15 7 4.9692 -7.1965 0.5364 16 6 5.4301 -8.4326 0.4648 17 6 5.0964 -9.2184 -0.6298 18 6 4.2717 -8.6717 -1.6127 19 6 3.8804 -9.4734 -2.7995 20 7 3.0872 -8.9331 -3.7459 21 8 4.2751 -10.6162 -2.9176 22 7 3.8451 -7.4190 -1.4732 23 6 4.1056 -4.6057 -1.4807 24 6 3.5107 -3.2014 -1.3540 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.7595 0.9324 27 1 3.8751 -0.6052 -0.8409 28 1 2.5395 -3.4395 1.1186 29 1 4.0107 -2.8921 1.9585 30 1 3.9192 -5.3760 1.7888 31 1 5.3079 -4.7077 0.8980 32 1 6.0632 -8.8255 1.2465 33 1 5.4629 -10.2307 -0.7159 34 1 2.7723 -8.0205 -3.6517 35 1 2.8312 -9.4571 -4.5211 36 1 5.1918 -4.5365 -1.5414 37 1 3.7206 -5.0839 -2.3813 38 1 2.4233 -3.2687 -1.3207 39 1 3.8120 -2.6000 -2.2117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:15 Heat of formation + Delta-G solvation = 45.549333 kcal Electronic energy + Delta-G solvation = -23006.879135 eV Core-core repulsion = 19564.450749 eV Total energy + Delta-G solvation = -3442.428386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55538 -39.63048 -38.57081 -35.49780 -34.52915 -33.44408 -32.52817 -31.25168 -30.59190 -28.31485 -26.06222 -25.43743 -23.51383 -22.90871 -21.76403 -21.05722 -19.35697 -18.53934 -18.05953 -17.02419 -16.86828 -16.34808 -15.76217 -15.66475 -14.99195 -14.75235 -14.42737 -14.41380 -14.27166 -14.10030 -13.88753 -13.39608 -12.83038 -12.40745 -12.16406 -11.40838 -11.29717 -11.17884 -11.05949 -10.87473 -10.81780 -10.67933 -10.42279 -10.28655 -10.25418 -10.03604 -9.94947 -9.55328 -9.44940 -8.63535 -8.41601 -7.32483 -6.14308 -4.14929 0.30736 0.78342 2.46754 2.85275 3.15933 3.24367 3.32753 3.35917 3.59968 3.87368 4.35700 4.36516 4.48752 4.76341 4.81640 4.96389 5.18263 5.26296 5.29056 5.40558 5.60467 5.67992 5.80788 5.86101 5.99287 6.12629 6.32841 6.40915 6.50802 6.58567 6.71979 6.74057 6.89146 6.97714 7.00090 7.15135 7.48678 7.79781 7.92641 7.93927 7.96181 8.39470 8.88479 9.47985 10.98447 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.003461 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.901285 B = 8088.786442 C = 8655.671587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.155 3.845 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.075 3.925 13 N -0.454 5.454 14 C 0.503 3.497 15 N -0.534 5.534 16 C 0.178 3.822 17 C -0.213 4.213 18 C 0.151 3.849 19 C 0.581 3.419 20 N -0.829 5.829 21 O -0.532 6.532 22 N -0.511 5.511 23 C 0.072 3.928 24 C 0.060 3.940 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.416 0.584 35 H 0.407 0.593 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.161 -15.879 -3.089 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.095 0.905 9 C 0.029 3.971 10 N -0.262 5.262 11 C -0.072 4.072 12 C -0.052 4.052 13 N -0.173 5.173 14 C 0.147 3.853 15 N -0.254 5.254 16 C 0.009 3.991 17 C -0.238 4.238 18 C 0.001 3.999 19 C 0.363 3.637 20 N -0.393 5.393 21 O -0.407 6.407 22 N -0.232 5.232 23 C -0.054 4.054 24 C -0.068 4.068 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.193 0.807 33 H 0.175 0.825 34 H 0.247 0.753 35 H 0.239 0.761 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.962 -15.413 -2.964 18.590 hybrid contribution -0.018 0.317 -0.243 0.400 sum 9.944 -15.095 -3.207 18.359 Atomic orbital electron populations 1.69931 1.06382 1.27033 1.50156 1.24972 0.94684 0.99206 0.94129 0.86799 0.80384 0.83600 0.78609 1.20203 1.21327 1.18881 1.21682 0.90555 0.94780 1.52202 0.90518 1.20157 0.94748 0.85273 0.96947 1.62670 1.58316 1.03994 1.01192 1.22082 0.99978 0.90568 0.94534 1.22251 0.98769 0.95018 0.89172 1.58607 1.53794 0.97954 1.06963 1.21129 0.86069 0.93065 0.85039 1.68411 1.11305 1.15324 1.30378 1.23209 0.92884 0.87804 0.95227 1.22706 1.01745 1.03657 0.95703 1.21301 0.93722 0.90160 0.94725 1.17800 0.78428 0.85451 0.82001 1.43660 1.51545 1.19765 1.24330 1.90832 1.55006 1.17290 1.77528 1.67871 1.24465 1.06199 1.24701 1.22405 0.98899 0.93864 0.90206 1.22023 0.99724 0.91030 0.94069 0.92646 0.95290 0.95522 0.92599 0.90383 0.89716 0.92453 0.80665 0.82514 0.75322 0.76150 0.93462 0.89253 0.91994 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.82 27.37 -169.99 -4.65 16.17 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.01 6.69 56.52 0.38 -5.63 16 7 C -0.55 -14.84 8.21 -34.44 -0.28 -15.12 16 8 H 0.08 2.25 6.07 -52.49 -0.32 1.94 16 9 C 0.16 3.56 4.21 -4.97 -0.02 3.54 16 10 N -0.54 -10.61 4.92 -235.91 -1.16 -11.77 16 11 C 0.06 1.05 5.32 -3.77 -0.02 1.03 16 12 C 0.07 1.17 4.77 -3.76 -0.02 1.15 16 13 N -0.45 -7.20 4.77 -175.27 -0.84 -8.03 16 14 C 0.50 7.33 7.17 -322.95 -2.32 5.02 16 15 N -0.53 -7.03 8.67 -13.94 -0.12 -7.15 16 16 C 0.18 1.76 11.30 -17.22 -0.19 1.56 16 17 C -0.21 -2.17 9.71 -38.91 -0.38 -2.55 16 18 C 0.15 1.81 6.79 -82.65 -0.56 1.25 16 19 C 0.58 6.62 8.10 -12.04 -0.10 6.52 16 20 N -0.83 -6.87 8.87 30.67 0.27 -6.60 16 21 O -0.53 -7.28 17.25 5.39 0.09 -7.19 16 22 N -0.51 -6.83 8.97 -10.49 -0.09 -6.93 16 23 C 0.07 1.10 5.46 -3.77 -0.02 1.08 16 24 C 0.06 1.10 5.24 -3.77 -0.02 1.08 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.67 7.52 -51.93 -0.39 0.28 16 27 H 0.03 0.61 7.29 -51.93 -0.38 0.23 16 28 H 0.06 1.18 6.78 -51.93 -0.35 0.83 16 29 H 0.08 1.37 8.12 -51.93 -0.42 0.94 16 30 H 0.08 1.26 7.80 -51.93 -0.41 0.86 16 31 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.32 7.73 -52.49 -0.41 0.91 16 34 H 0.42 3.25 8.21 -40.82 -0.34 2.92 16 35 H 0.41 2.50 8.93 -40.82 -0.36 2.13 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.24 7.64 -51.93 -0.40 0.84 16 38 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -32.17 320.81 -9.87 -42.04 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.96 Total: 4.11 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -4.03 Total: 6.50 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.17 Total: -66.45 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.19 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.65 Total: 16.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.17 -9.87 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.588 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds