Wall clock time and date at job start Fri Apr 10 2020 14:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00511 * 2 1 4 4 H 1.48497 * 109.47106 * 270.00152 * 3 2 1 5 5 H 1.48506 * 109.47031 * 29.99808 * 3 2 1 6 6 H 1.48492 * 109.47551 * 149.99789 * 3 2 1 7 7 C 1.37879 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99635 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47024 * 184.99171 * 9 7 2 11 11 C 1.46954 * 110.99736 * 295.18897 * 10 9 7 12 12 C 1.53057 * 109.36815 * 183.18909 * 11 10 9 13 13 N 1.46964 * 109.36041 * 301.60427 * 12 11 10 14 14 C 1.38426 * 110.99736 * 183.18684 * 13 12 11 15 15 N 1.32595 * 119.13775 * 359.97438 * 14 13 12 16 16 C 1.32116 * 120.95800 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.24446 * 0.27493 * 16 15 14 18 18 C 1.39476 * 118.42014 * 359.43998 * 17 16 15 19 19 C 1.48467 * 120.49928 * 180.30270 * 18 17 16 20 20 N 1.34785 * 119.99274 * 180.25823 * 19 18 17 21 21 O 1.21473 * 120.00475 * 0.26300 * 19 18 17 22 22 N 1.32258 * 119.13850 * 179.97438 * 14 13 12 23 23 C 1.46955 * 110.88169 * 59.31365 * 13 12 11 24 24 C 1.46956 * 111.00289 * 58.98887 * 10 9 7 25 25 H 0.96998 * 119.99445 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47445 * 64.98748 * 9 7 2 27 27 H 1.09004 * 109.47138 * 304.98369 * 9 7 2 28 28 H 1.09004 * 109.49282 * 63.22130 * 11 10 9 29 29 H 1.09004 * 109.49441 * 303.15797 * 11 10 9 30 30 H 1.08993 * 109.49150 * 181.63610 * 12 11 10 31 31 H 1.08996 * 109.50383 * 61.57250 * 12 11 10 32 32 H 1.07996 * 120.37846 * 179.97438 * 16 15 14 33 33 H 1.07999 * 120.79152 * 179.72455 * 17 16 15 34 34 H 0.96998 * 120.00216 * 0.02562 * 20 19 18 35 35 H 0.97006 * 119.99497 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.48546 * 60.64868 * 23 13 12 37 37 H 1.08996 * 109.48489 * 180.70966 * 23 13 12 38 38 H 1.08999 * 109.48513 * 296.78052 * 24 10 9 39 39 H 1.08998 * 109.48856 * 56.84490 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 4.0011 -2.5740 -0.1189 11 6 3.6256 -3.3702 1.0578 12 6 4.2205 -4.7747 0.9312 13 7 3.7302 -5.4020 -0.3041 14 6 4.1915 -6.7022 -0.4171 15 7 4.9692 -7.1965 0.5364 16 6 5.4301 -8.4326 0.4648 17 6 5.0964 -9.2184 -0.6298 18 6 4.2717 -8.6717 -1.6127 19 6 3.8804 -9.4734 -2.7995 20 7 3.0872 -8.9331 -3.7459 21 8 4.2751 -10.6162 -2.9176 22 7 3.8451 -7.4190 -1.4732 23 6 4.1056 -4.6057 -1.4807 24 6 3.5107 -3.2014 -1.3540 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.7595 0.9324 27 1 3.8751 -0.6052 -0.8409 28 1 2.5395 -3.4395 1.1186 29 1 4.0107 -2.8921 1.9585 30 1 3.9192 -5.3760 1.7888 31 1 5.3079 -4.7077 0.8980 32 1 6.0632 -8.8255 1.2465 33 1 5.4629 -10.2307 -0.7159 34 1 2.7723 -8.0205 -3.6517 35 1 2.8312 -9.4571 -4.5211 36 1 5.1918 -4.5365 -1.5414 37 1 3.7206 -5.0839 -2.3813 38 1 2.4233 -3.2687 -1.3207 39 1 3.8120 -2.6000 -2.2117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:14 Heat of formation + Delta-G solvation = 19.525670 kcal Electronic energy + Delta-G solvation = -23008.007606 eV Core-core repulsion = 19564.450749 eV Total energy + Delta-G solvation = -3443.556856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51839 -40.65028 -39.79777 -36.94294 -35.42009 -34.50941 -34.29308 -32.41487 -31.95273 -29.97274 -27.11934 -26.90140 -24.70533 -24.18459 -23.26831 -22.18398 -20.83093 -19.51196 -19.00051 -18.84906 -17.95875 -17.34969 -16.79191 -16.53772 -16.50161 -15.96441 -15.94328 -15.83762 -15.41474 -15.37193 -14.79758 -14.72830 -14.38522 -14.28589 -13.69603 -13.01199 -12.92484 -12.44117 -12.31039 -12.20123 -12.09831 -11.97866 -11.89378 -11.74829 -11.74412 -11.54580 -11.24681 -10.82452 -10.76713 -10.39547 -9.50156 -9.05170 -8.29110 -6.34663 -0.59041 -0.10250 1.38390 1.40081 1.51792 1.57394 1.90392 2.24903 2.36067 2.68186 3.01377 3.06283 3.25581 3.39040 3.68962 3.84617 3.99600 4.10040 4.19073 4.23037 4.34258 4.46298 4.58457 4.63705 4.81127 4.91502 4.98627 5.06996 5.08048 5.13201 5.20923 5.45157 5.50771 5.55404 5.70501 6.02211 6.12541 6.22306 6.32132 6.33640 6.72625 6.91570 7.08577 7.32268 8.87167 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.003461 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.901285 B = 8088.786442 C = 8655.671587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.549 4.549 8 H 0.034 0.966 9 C 0.162 3.838 10 N -0.531 5.531 11 C 0.061 3.939 12 C 0.092 3.908 13 N -0.474 5.474 14 C 0.486 3.514 15 N -0.548 5.548 16 C 0.185 3.815 17 C -0.200 4.200 18 C 0.133 3.867 19 C 0.581 3.419 20 N -0.813 5.813 21 O -0.559 6.559 22 N -0.520 5.520 23 C 0.086 3.914 24 C 0.064 3.936 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.178 0.822 34 H 0.420 0.580 35 H 0.418 0.582 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.023 0.977 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 -16.561 -3.040 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.588 4.588 8 H 0.052 0.948 9 C 0.034 3.966 10 N -0.254 5.254 11 C -0.068 4.068 12 C -0.035 4.035 13 N -0.194 5.194 14 C 0.129 3.871 15 N -0.268 5.268 16 C 0.016 3.984 17 C -0.224 4.224 18 C -0.016 4.016 19 C 0.363 3.637 20 N -0.377 5.377 21 O -0.436 6.436 22 N -0.241 5.241 23 C -0.040 4.040 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.195 0.805 34 H 0.251 0.749 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.041 0.959 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.561 -16.128 -2.943 20.653 hybrid contribution -0.856 0.349 -0.265 0.962 sum 11.706 -15.778 -3.209 19.907 Atomic orbital electron populations 1.70091 1.08450 1.28118 1.52213 1.25929 0.95472 1.03451 0.93864 0.85666 0.79529 0.78242 0.79210 1.19143 1.21397 1.16715 1.21890 0.92729 0.93148 1.51009 0.94776 1.20036 0.91793 0.87510 0.97258 1.62697 1.57516 1.02963 1.02226 1.22075 0.97814 0.92528 0.94419 1.22026 0.98746 0.93014 0.89750 1.58548 1.55139 0.98939 1.06787 1.20991 0.87371 0.92538 0.86172 1.68414 1.11458 1.16931 1.29968 1.23940 0.92135 0.86467 0.95863 1.23037 1.00114 1.04402 0.94859 1.21544 0.94486 0.89927 0.95602 1.17801 0.78595 0.85073 0.82263 1.43580 1.50188 1.19910 1.23988 1.90820 1.56386 1.18254 1.78173 1.67788 1.24800 1.06856 1.24682 1.22226 0.99037 0.91859 0.90877 1.21996 0.97513 0.93288 0.93691 0.92594 0.94889 0.94727 0.96423 0.89540 0.89016 0.91614 0.76355 0.80479 0.74870 0.74837 0.92540 0.87993 0.95859 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.95 42.77 27.37 68.60 1.88 44.64 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.10 6.69 99.48 0.67 -9.43 16 7 C -0.55 -30.35 8.21 25.60 0.21 -30.14 16 8 H 0.03 2.14 6.07 -2.91 -0.02 2.12 16 9 C 0.16 7.34 4.21 85.56 0.36 7.70 16 10 N -0.53 -20.86 4.92 -900.28 -4.43 -25.28 16 11 C 0.06 2.25 5.32 86.31 0.46 2.71 16 12 C 0.09 2.80 4.77 86.31 0.41 3.21 16 13 N -0.47 -14.83 4.77 -708.42 -3.38 -18.21 16 14 C 0.49 13.52 7.17 261.54 1.88 15.39 16 15 N -0.55 -13.13 8.67 -198.01 -1.72 -14.85 16 16 C 0.18 3.02 11.30 84.79 0.96 3.98 16 17 C -0.20 -3.50 9.71 22.71 0.22 -3.28 16 18 C 0.13 2.95 6.79 41.98 0.29 3.24 16 19 C 0.58 12.43 8.10 86.97 0.70 13.13 16 20 N -0.81 -12.48 8.87 -175.17 -1.55 -14.04 16 21 O -0.56 -14.55 17.25 -3.63 -0.06 -14.62 16 22 N -0.52 -13.27 8.97 -187.11 -1.68 -14.94 16 23 C 0.09 2.56 5.46 86.31 0.47 3.03 16 24 C 0.06 2.36 5.24 86.31 0.45 2.81 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.03 1.48 7.52 -2.39 -0.02 1.47 16 27 H 0.03 1.53 7.29 -2.39 -0.02 1.51 16 28 H 0.02 0.78 6.78 -2.38 -0.02 0.77 16 29 H 0.09 3.01 8.12 -2.39 -0.02 2.99 16 30 H 0.09 2.66 7.80 -2.39 -0.02 2.64 16 31 H 0.07 1.91 8.03 -2.39 -0.02 1.89 16 32 H 0.22 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.18 2.39 7.73 -2.91 -0.02 2.36 16 34 H 0.42 6.12 8.21 -92.71 -0.76 5.36 16 35 H 0.42 4.58 8.93 -92.70 -0.83 3.75 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 2.76 7.64 -2.39 -0.02 2.74 16 38 H 0.02 1.04 6.62 -2.39 -0.02 1.02 16 39 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -71.60 320.81 -4.30 -75.90 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.53 Total: 16.73 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 6.87 Total: 22.86 kcal Atomic # 7 Polarization: -133.06 SS G_CDS: -12.46 Total: -145.52 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.06 Total: -14.62 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.64 kcal Total: -71.60 -4.30 -75.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.423 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds