Wall clock time and date at job start Fri Apr 10 2020 14:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39889 * 125.74671 * 2 1 4 4 C 1.30285 * 109.23359 * 179.71342 * 3 2 1 5 5 C 1.41490 * 108.18653 * 0.44030 * 4 3 2 6 6 C 1.46773 * 126.51549 * 179.81662 * 5 4 3 7 7 O 1.21683 * 119.99932 * 179.68975 * 6 5 4 8 8 N 1.34775 * 120.00071 * 359.69711 * 6 5 4 9 9 C 1.46503 * 119.99929 * 180.02562 * 8 6 5 10 10 H 1.09006 * 115.51564 * 350.40525 * 9 8 6 11 11 C 1.53001 * 117.44112 * 204.99861 * 9 8 6 12 12 H 1.09002 * 119.53987 * 4.11354 * 11 9 8 13 13 C 1.54391 * 118.12276 * 159.20929 * 11 9 8 14 14 N 1.51826 * 102.86597 * 88.01620 * 13 11 9 15 15 C 1.36943 * 127.61033 * 140.54207 * 14 13 11 16 16 H 1.07994 * 119.99697 * 179.66525 * 15 14 13 17 17 C 1.38808 * 119.99940 * 359.67089 * 15 14 13 18 18 N 1.31624 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00176 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47550 * 89.99681 * 19 17 15 21 21 H 1.48501 * 109.47411 * 209.99883 * 19 17 15 22 22 H 1.48504 * 109.46856 * 329.99412 * 19 17 15 23 23 C 1.48144 * 104.55308 * 320.27435 * 14 13 11 24 24 C 1.52992 * 117.44579 * 135.75651 * 9 8 6 25 25 H 1.09007 * 119.54057 * 355.88031 * 24 9 8 26 26 C 1.34842 * 125.74590 * 179.97438 * 2 1 3 27 27 N 1.38005 * 126.44929 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.47219 * 270.00584 * 1 2 3 29 29 H 1.08996 * 109.47056 * 30.00219 * 1 2 3 30 30 H 1.08998 * 109.46730 * 150.00535 * 1 2 3 31 31 H 1.08008 * 125.90744 * 180.26528 * 4 3 2 32 32 H 0.96998 * 120.00482 * 359.97438 * 8 6 5 33 33 H 1.08992 * 110.40800 * 207.99366 * 13 11 9 34 34 H 1.08999 * 110.40393 * 330.42441 * 13 11 9 35 35 H 0.96995 * 119.99945 * 180.02562 * 18 17 15 36 36 H 1.09002 * 110.40706 * 281.07236 * 23 14 13 37 37 H 1.09001 * 110.41178 * 158.64223 * 23 14 13 38 38 H 0.97003 * 120.00351 * 180.02562 * 27 26 2 39 39 H 0.97004 * 120.00072 * 0.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7650 0.0062 5 6 3.5728 -0.6492 0.0001 6 6 4.7774 -1.4877 0.0001 7 8 4.6747 -2.7002 0.0003 8 7 5.9973 -0.9148 0.0002 9 6 7.1997 -1.7518 -0.0004 10 1 7.0309 -2.8162 0.1632 11 6 8.4815 -1.1448 0.5735 12 1 8.4521 -0.1515 1.0213 13 6 9.5981 -2.1056 1.0360 14 7 10.4045 -2.3221 -0.2321 15 6 11.7659 -2.4090 -0.3521 16 1 12.2132 -2.5713 -1.3215 17 6 12.5708 -2.2887 0.7724 18 7 12.0256 -2.0905 1.9539 19 14 14.4278 -2.4079 0.6088 20 1 14.9913 -1.0556 0.3662 21 1 15.0002 -2.9654 1.8605 22 1 14.7682 -3.2978 -0.5303 23 6 9.3892 -2.4244 -1.3060 24 6 8.3339 -1.3560 -0.9477 25 1 8.1947 -0.5199 -1.6331 26 6 2.2528 -1.0944 0.0005 27 7 1.8308 -2.4084 0.0016 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.3873 1.4238 0.0118 32 1 6.0792 0.0517 -0.0002 33 1 10.1896 -1.6474 1.8285 34 1 9.1708 -3.0489 1.3763 35 1 12.5881 -2.0060 2.7395 36 1 8.9388 -3.4170 -1.3099 37 1 9.8376 -2.2058 -2.2751 38 1 2.4823 -3.1270 0.0022 39 1 0.8827 -2.6133 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958633633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:58 Heat of formation + Delta-G solvation = 110.295514 kcal Electronic energy + Delta-G solvation = -22445.637697 eV Core-core repulsion = 19006.016916 eV Total energy + Delta-G solvation = -3439.620781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50114 -39.30485 -37.86974 -35.24514 -34.13401 -33.32907 -32.42219 -30.19342 -28.77213 -27.32956 -26.96022 -25.54546 -23.04924 -21.71159 -20.82710 -20.33276 -19.89365 -19.08705 -18.13126 -16.96921 -16.80568 -16.30987 -16.01298 -15.89600 -14.82322 -14.65143 -14.35963 -14.00015 -13.58457 -13.46457 -13.13904 -13.05821 -12.99439 -12.64436 -12.08194 -11.49892 -11.38165 -11.25329 -11.07508 -11.00999 -10.80958 -10.27160 -10.13460 -9.93006 -9.70123 -9.60408 -9.26591 -9.09462 -8.75844 -8.29898 -7.93239 -6.86973 -5.61794 -3.05666 1.68356 1.97494 2.12548 3.40641 3.41903 3.44818 3.47868 3.49406 3.59026 4.17407 4.47590 4.53147 4.67381 4.73533 4.95830 5.03070 5.22293 5.29683 5.42212 5.45766 5.54231 5.66284 5.90187 6.00442 6.05516 6.30149 6.34380 6.40683 6.63597 6.75140 6.97552 6.97981 7.07361 7.16748 7.39480 7.58820 7.59235 7.83781 7.86715 8.33015 8.54845 9.17064 9.81115 10.53046 11.41505 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.047779 B = 0.002752 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.892201 B =10170.712391 C =10335.552545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.404 5.404 3 N -0.308 5.308 4 C 0.114 3.886 5 C -0.369 4.369 6 C 0.607 3.393 7 O -0.569 6.569 8 N -0.694 5.694 9 C 0.099 3.901 10 H 0.130 0.870 11 C -0.173 4.173 12 H 0.101 0.899 13 C 0.156 3.844 14 N -0.602 5.602 15 C -0.213 4.213 16 H 0.079 0.921 17 C -0.015 4.015 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.161 3.839 24 C -0.187 4.187 25 H 0.101 0.899 26 C 0.434 3.566 27 N -0.830 5.830 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.397 0.603 33 H 0.136 0.864 34 H 0.017 0.983 35 H 0.253 0.747 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.433 0.567 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.696 4.429 -3.398 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.192 5.192 3 N -0.126 5.126 4 C -0.076 4.076 5 C -0.388 4.388 6 C 0.397 3.603 7 O -0.450 6.450 8 N -0.341 5.341 9 C -0.007 4.007 10 H 0.147 0.853 11 C -0.194 4.194 12 H 0.119 0.881 13 C 0.032 3.968 14 N -0.326 5.326 15 C -0.341 4.341 16 H 0.097 0.903 17 C -0.210 4.210 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.034 3.966 24 C -0.209 4.209 25 H 0.119 0.881 26 C 0.199 3.801 27 N -0.380 5.380 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.206 0.794 32 H 0.230 0.770 33 H 0.153 0.847 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.270 0.730 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -24.411 4.582 -3.288 25.054 hybrid contribution 1.180 -0.393 -0.138 1.251 sum -23.231 4.189 -3.425 23.853 Atomic orbital electron populations 1.21796 0.74302 1.04454 1.03367 1.48158 1.06363 1.02397 1.62293 1.77117 1.01792 1.05310 1.28380 1.23797 0.95239 0.93485 0.95065 1.19314 0.90921 0.93636 1.34960 1.16876 0.81950 0.86682 0.74833 1.90664 1.86823 1.14325 1.53162 1.45050 1.04620 1.09524 1.74876 1.21851 0.79601 0.95752 1.03537 0.85285 1.24628 0.96160 1.02146 0.96477 0.88097 1.22544 0.88501 0.94033 0.91725 1.46138 1.00962 1.83838 1.01654 1.19115 0.79771 1.41162 0.94023 0.90291 1.24753 0.98263 1.02801 0.95219 1.69493 1.32864 1.56838 0.98013 0.86018 0.84744 0.77587 0.76829 1.21681 1.21668 1.20781 1.21071 0.88696 0.94146 0.92707 1.24386 0.99365 1.03074 0.94083 0.88060 1.18036 0.89472 0.81915 0.90691 1.41814 1.11205 1.02783 1.82203 0.90747 0.88739 0.90146 0.79442 0.76951 0.84692 0.96469 0.93625 0.95597 0.93150 0.73030 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.25 59.85 0.67 1.19 16 2 N -0.40 -3.97 4.00 -66.82 -0.27 -4.24 16 3 N -0.31 -3.58 12.47 30.88 0.39 -3.20 16 4 C 0.11 1.27 11.49 -16.97 -0.20 1.07 16 5 C -0.37 -4.75 6.15 -104.81 -0.64 -5.39 16 6 C 0.61 9.29 7.79 -12.81 -0.10 9.19 16 7 O -0.57 -10.17 14.71 5.20 0.08 -10.10 16 8 N -0.69 -10.09 5.55 -55.08 -0.31 -10.39 16 9 C 0.10 1.74 5.96 -67.93 -0.41 1.33 16 10 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 11 C -0.17 -3.40 6.96 -89.22 -0.62 -4.02 16 12 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 13 C 0.16 3.83 6.43 -0.29 0.00 3.83 16 14 N -0.60 -15.68 3.46 -165.71 -0.57 -16.25 16 15 C -0.21 -5.97 10.42 -15.06 -0.16 -6.12 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.92 -26.88 10.12 55.49 0.56 -26.32 16 19 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.16 3.48 7.05 -2.41 -0.02 3.46 16 24 C -0.19 -3.50 7.06 -89.22 -0.63 -4.13 16 25 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 26 C 0.43 4.81 7.98 -153.79 -1.23 3.59 16 27 N -0.83 -7.05 9.02 31.40 0.28 -6.77 16 28 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.21 7.46 -51.93 -0.39 -0.18 16 31 H 0.19 1.49 7.50 -52.48 -0.39 1.09 16 32 H 0.40 4.66 7.77 -40.82 -0.32 4.35 16 33 H 0.14 3.69 5.34 -51.93 -0.28 3.41 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.43 4.37 7.01 -40.82 -0.29 4.08 16 39 H 0.40 1.90 8.04 -40.82 -0.33 1.58 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -34.65 327.91 -8.22 -42.88 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.88 Total: 8.86 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -3.42 Total: 3.46 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: 0.08 Total: -67.17 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.65 -8.22 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958633633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.171 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds