Wall clock time and date at job start Fri Apr 10 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39889 * 125.74671 * 2 1 4 4 C 1.30285 * 109.23359 * 179.71342 * 3 2 1 5 5 C 1.41490 * 108.18653 * 0.44030 * 4 3 2 6 6 C 1.46773 * 126.51549 * 179.81662 * 5 4 3 7 7 O 1.21683 * 119.99932 * 179.68975 * 6 5 4 8 8 N 1.34775 * 120.00071 * 359.69711 * 6 5 4 9 9 C 1.46503 * 119.99929 * 180.02562 * 8 6 5 10 10 H 1.09006 * 115.51564 * 350.40525 * 9 8 6 11 11 C 1.53001 * 117.44112 * 204.99861 * 9 8 6 12 12 H 1.09002 * 119.53987 * 4.11354 * 11 9 8 13 13 C 1.54391 * 118.12276 * 159.20929 * 11 9 8 14 14 N 1.51826 * 102.86597 * 88.01620 * 13 11 9 15 15 C 1.36943 * 127.61033 * 140.54207 * 14 13 11 16 16 H 1.07994 * 119.99697 * 179.66525 * 15 14 13 17 17 C 1.38808 * 119.99940 * 359.67089 * 15 14 13 18 18 N 1.31624 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00176 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47550 * 89.99681 * 19 17 15 21 21 H 1.48501 * 109.47411 * 209.99883 * 19 17 15 22 22 H 1.48504 * 109.46856 * 329.99412 * 19 17 15 23 23 C 1.48144 * 104.55308 * 320.27435 * 14 13 11 24 24 C 1.52992 * 117.44579 * 135.75651 * 9 8 6 25 25 H 1.09007 * 119.54057 * 355.88031 * 24 9 8 26 26 C 1.34842 * 125.74590 * 179.97438 * 2 1 3 27 27 N 1.38005 * 126.44929 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.47219 * 270.00584 * 1 2 3 29 29 H 1.08996 * 109.47056 * 30.00219 * 1 2 3 30 30 H 1.08998 * 109.46730 * 150.00535 * 1 2 3 31 31 H 1.08008 * 125.90744 * 180.26528 * 4 3 2 32 32 H 0.96998 * 120.00482 * 359.97438 * 8 6 5 33 33 H 1.08992 * 110.40800 * 207.99366 * 13 11 9 34 34 H 1.08999 * 110.40393 * 330.42441 * 13 11 9 35 35 H 0.96995 * 119.99945 * 180.02562 * 18 17 15 36 36 H 1.09002 * 110.40706 * 281.07236 * 23 14 13 37 37 H 1.09001 * 110.41178 * 158.64223 * 23 14 13 38 38 H 0.97003 * 120.00351 * 180.02562 * 27 26 2 39 39 H 0.97004 * 120.00072 * 0.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7650 0.0062 5 6 3.5728 -0.6492 0.0001 6 6 4.7774 -1.4877 0.0001 7 8 4.6747 -2.7002 0.0003 8 7 5.9973 -0.9148 0.0002 9 6 7.1997 -1.7518 -0.0004 10 1 7.0309 -2.8162 0.1632 11 6 8.4815 -1.1448 0.5735 12 1 8.4521 -0.1515 1.0213 13 6 9.5981 -2.1056 1.0360 14 7 10.4045 -2.3221 -0.2321 15 6 11.7659 -2.4090 -0.3521 16 1 12.2132 -2.5713 -1.3215 17 6 12.5708 -2.2887 0.7724 18 7 12.0256 -2.0905 1.9539 19 14 14.4278 -2.4079 0.6088 20 1 14.9913 -1.0556 0.3662 21 1 15.0002 -2.9654 1.8605 22 1 14.7682 -3.2978 -0.5303 23 6 9.3892 -2.4244 -1.3060 24 6 8.3339 -1.3560 -0.9477 25 1 8.1947 -0.5199 -1.6331 26 6 2.2528 -1.0944 0.0005 27 7 1.8308 -2.4084 0.0016 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 4.3873 1.4238 0.0118 32 1 6.0792 0.0517 -0.0002 33 1 10.1896 -1.6474 1.8285 34 1 9.1708 -3.0489 1.3763 35 1 12.5881 -2.0060 2.7395 36 1 8.9388 -3.4170 -1.3099 37 1 9.8376 -2.2058 -2.2751 38 1 2.4823 -3.1270 0.0022 39 1 0.8827 -2.6133 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958633633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:56 Heat of formation + Delta-G solvation = 85.000326 kcal Electronic energy + Delta-G solvation = -22446.734578 eV Core-core repulsion = 19006.016916 eV Total energy + Delta-G solvation = -3440.717662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.31884 -40.69916 -39.30748 -36.15133 -35.66512 -34.29041 -33.82015 -31.98338 -29.70727 -28.77325 -28.06934 -27.33321 -24.25005 -23.04996 -22.04732 -21.61927 -21.03614 -20.72732 -18.99484 -18.84010 -17.84890 -17.49533 -16.94103 -16.74414 -16.62242 -15.74357 -15.51830 -15.46743 -14.98472 -14.73486 -14.52517 -14.23172 -13.69463 -13.63134 -13.49514 -13.18569 -13.01445 -12.94514 -12.68995 -12.25542 -12.08804 -11.95121 -11.90569 -11.66292 -11.57821 -10.97301 -10.84794 -10.60225 -10.01476 -9.61685 -8.93109 -8.84850 -7.72833 -5.20160 0.81111 1.24417 1.29297 1.49993 1.52146 1.60619 2.20974 2.46135 2.53028 2.77955 3.01515 3.36242 3.54217 3.60737 3.93941 4.00736 4.04861 4.12020 4.23840 4.40188 4.41877 4.51069 4.53773 4.64128 4.68233 4.91452 5.00452 5.04733 5.34054 5.38445 5.45326 5.49482 5.56713 5.69236 5.81630 6.25296 6.29574 6.51347 6.67281 6.91342 7.05472 7.39903 7.72425 8.47844 9.28627 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.047779 B = 0.002752 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.892201 B =10170.712391 C =10335.552545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.401 5.401 3 N -0.326 5.326 4 C 0.117 3.883 5 C -0.397 4.397 6 C 0.604 3.396 7 O -0.601 6.601 8 N -0.683 5.683 9 C 0.124 3.876 10 H 0.108 0.892 11 C -0.176 4.176 12 H 0.119 0.881 13 C 0.154 3.846 14 N -0.625 5.625 15 C -0.230 4.230 16 H 0.084 0.916 17 C -0.071 4.071 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.272 1.272 23 C 0.154 3.846 24 C -0.173 4.173 25 H 0.130 0.870 26 C 0.432 3.568 27 N -0.818 5.818 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.214 0.786 32 H 0.413 0.587 33 H 0.108 0.892 34 H -0.003 1.003 35 H 0.248 0.752 36 H 0.023 0.977 37 H 0.060 0.940 38 H 0.427 0.573 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.275 5.546 -4.430 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.190 5.190 3 N -0.145 5.145 4 C -0.073 4.073 5 C -0.416 4.416 6 C 0.396 3.604 7 O -0.484 6.484 8 N -0.331 5.331 9 C 0.016 3.984 10 H 0.126 0.874 11 C -0.197 4.197 12 H 0.136 0.864 13 C 0.030 3.970 14 N -0.350 5.350 15 C -0.358 4.358 16 H 0.102 0.898 17 C -0.263 4.263 18 N -0.599 5.599 19 Si 0.813 3.187 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.197 1.197 23 C 0.028 3.972 24 C -0.194 4.194 25 H 0.147 0.853 26 C 0.194 3.806 27 N -0.368 5.368 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.230 0.770 32 H 0.250 0.750 33 H 0.125 0.875 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.263 0.737 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -26.069 5.728 -4.345 27.043 hybrid contribution 1.525 -0.812 0.177 1.737 sum -24.545 4.916 -4.167 25.377 Atomic orbital electron populations 1.22213 0.71697 1.06209 1.04835 1.48451 1.07698 1.01409 1.61423 1.77061 1.02194 1.06474 1.28743 1.24186 0.95947 0.93031 0.94129 1.19231 0.90611 0.94309 1.37459 1.17247 0.82561 0.86546 0.74038 1.90647 1.87274 1.15815 1.54704 1.44842 1.03402 1.10058 1.74819 1.21371 0.80145 0.95077 1.01764 0.87437 1.24313 0.96248 1.01834 0.97304 0.86352 1.22291 0.89593 0.93957 0.91170 1.46434 1.01188 1.84164 1.03230 1.19494 0.81159 1.40811 0.94359 0.89817 1.25611 1.02624 1.03069 0.95011 1.69754 1.34003 1.57748 0.98446 0.84981 0.79422 0.77648 0.76674 1.21142 1.22126 1.19671 1.21199 0.88775 0.95031 0.92179 1.24314 0.98809 1.02642 0.93650 0.85267 1.18151 0.89468 0.82941 0.89996 1.41791 1.12232 1.01725 1.81069 0.89401 0.87982 0.87521 0.76972 0.75004 0.87479 0.98505 0.94175 0.95941 0.92116 0.73725 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.25 127.77 1.44 2.09 16 2 N -0.40 -6.98 4.00 -365.31 -1.46 -8.44 16 3 N -0.33 -6.92 12.47 -56.22 -0.70 -7.62 16 4 C 0.12 2.36 11.49 85.72 0.99 3.35 16 5 C -0.40 -9.59 6.15 -19.99 -0.12 -9.71 16 6 C 0.60 17.85 7.79 86.47 0.67 18.53 16 7 O -0.60 -21.33 14.71 -4.29 -0.06 -21.40 16 8 N -0.68 -18.74 5.55 -446.41 -2.48 -21.22 16 9 C 0.12 4.26 5.96 44.99 0.27 4.53 16 10 H 0.11 4.27 7.40 -2.38 -0.02 4.26 16 11 C -0.18 -6.83 6.96 -9.89 -0.07 -6.90 16 12 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 13 C 0.15 7.79 6.43 85.80 0.55 8.34 16 14 N -0.63 -33.05 3.46 -678.18 -2.35 -35.39 16 15 C -0.23 -13.02 10.42 84.03 0.88 -12.14 16 16 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 18 N -0.95 -56.73 10.12 21.65 0.22 -56.51 16 19 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.15 6.61 7.05 86.53 0.61 7.22 16 24 C -0.17 -6.18 7.06 -9.89 -0.07 -6.25 16 25 H 0.13 3.95 8.14 -2.38 -0.02 3.93 16 26 C 0.43 8.79 7.98 132.70 1.06 9.85 16 27 N -0.82 -12.47 9.02 -54.58 -0.49 -12.96 16 28 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.19 7.46 -2.39 -0.02 0.17 16 31 H 0.21 2.80 7.50 -2.91 -0.02 2.77 16 32 H 0.41 8.66 7.77 -92.71 -0.72 7.94 16 33 H 0.11 6.08 5.34 -2.39 -0.01 6.07 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.43 8.19 7.01 -92.71 -0.65 7.54 16 39 H 0.42 2.99 8.04 -92.71 -0.75 2.24 16 Total: -1.00 -76.02 327.91 0.37 -75.64 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.99 Total: 24.65 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.67 Total: 15.30 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -7.26 Total: -142.15 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.02 0.37 -75.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958633633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.645 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds