Wall clock time and date at job start Fri Apr 10 2020 14:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46797 * 2 1 4 4 N 1.28706 * 126.03975 * 95.31644 * 3 2 1 5 5 N 1.28515 * 110.64191 * 179.97438 * 4 3 2 6 6 C 1.33312 * 109.43825 * 359.97438 * 5 4 3 7 7 C 1.37006 * 106.37334 * 359.97438 * 6 5 4 8 8 C 1.47232 * 127.18825 * 180.02562 * 7 6 5 9 9 O 1.21620 * 120.00054 * 174.48663 * 8 7 6 10 10 N 1.34777 * 120.00443 * 354.48506 * 8 7 6 11 11 C 1.46499 * 120.00333 * 184.81657 * 10 8 7 12 12 H 1.09002 * 115.51369 * 9.41924 * 11 10 8 13 13 C 1.52997 * 117.44202 * 223.99905 * 11 10 8 14 14 H 1.08997 * 119.54514 * 4.12552 * 13 11 10 15 15 C 1.54440 * 118.08934 * 160.74037 * 13 11 10 16 16 N 1.48148 * 104.55623 * 87.29679 * 15 13 11 17 17 C 1.36938 * 127.83844 * 140.40069 * 16 15 13 18 18 H 1.07995 * 120.00229 * 194.94185 * 17 16 15 19 19 C 1.38811 * 119.99950 * 14.94542 * 17 16 15 20 20 N 1.31619 * 120.00299 * 14.10171 * 19 17 16 21 21 Si 1.86803 * 120.00063 * 194.10598 * 19 17 16 22 22 H 1.48499 * 109.47496 * 94.98645 * 21 19 17 23 23 H 1.48501 * 109.47167 * 214.98842 * 21 19 17 24 24 H 1.48502 * 109.46855 * 334.98504 * 21 19 17 25 25 C 1.48147 * 104.32675 * 320.40114 * 16 15 13 26 26 C 1.53001 * 117.44055 * 154.83091 * 11 10 8 27 27 H 1.08993 * 119.54156 * 354.28956 * 26 11 10 28 28 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46955 * 300.00146 * 1 2 3 30 30 H 1.09002 * 109.46934 * 60.00185 * 1 2 3 31 31 H 1.08998 * 109.46955 * 239.99854 * 2 1 3 32 32 H 1.08995 * 109.47215 * 119.99540 * 2 1 3 33 33 H 1.08009 * 126.81386 * 180.02562 * 6 5 4 34 34 H 0.97003 * 119.99863 * 4.81619 * 10 8 7 35 35 H 1.09005 * 110.45104 * 328.52888 * 15 13 11 36 36 H 1.09001 * 110.42468 * 206.05272 * 15 13 11 37 37 H 0.96999 * 120.00686 * 180.02562 * 20 19 17 38 38 H 1.08994 * 110.40487 * 280.80516 * 25 16 15 39 39 H 1.08996 * 110.41201 * 158.36607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3616 2.0631 1.0363 5 7 2.7453 3.2416 0.6964 6 6 2.6613 3.3709 -0.6277 7 6 2.1922 2.1749 -1.1036 8 6 1.9289 1.8172 -2.5074 9 8 1.6068 0.6803 -2.7951 10 7 2.0449 2.7497 -3.4736 11 6 1.6815 2.4227 -4.8546 12 1 1.1787 1.4656 -4.9938 13 6 2.6282 2.8896 -5.9622 14 1 3.5634 3.3827 -5.6973 15 6 2.5329 2.1979 -7.3397 16 7 1.4919 2.9601 -8.0679 17 6 1.4842 3.3202 -9.3891 18 1 0.7933 4.0725 -9.7397 19 6 2.3645 2.7182 -10.2776 20 7 3.0056 1.6229 -9.9286 21 14 2.6393 3.4624 -11.9688 22 1 3.8340 4.3437 -11.9337 23 1 2.8542 2.3765 -12.9586 24 1 1.4481 4.2588 -12.3586 25 6 0.4612 3.2445 -7.0425 26 6 1.2631 3.5782 -5.7660 27 1 1.1560 4.5796 -5.3494 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.9138 4.2449 -1.2100 34 1 2.3689 3.6374 -3.2545 35 1 2.2302 1.1572 -7.2232 36 1 3.4865 2.2610 -7.8638 37 1 3.6210 1.2024 -10.5493 38 1 -0.1649 2.3673 -6.8795 39 1 -0.1481 4.0971 -7.3422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958782194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:32 Heat of formation + Delta-G solvation = 103.932892 kcal Electronic energy + Delta-G solvation = -22678.964330 eV Core-core repulsion = 19239.067646 eV Total energy + Delta-G solvation = -3439.896685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 6.87 seconds Orbital eigenvalues (eV) -44.42156 -41.12319 -39.77128 -36.67869 -35.99628 -34.51836 -32.80601 -31.85805 -31.65179 -28.92149 -27.71270 -26.01903 -24.91632 -23.84457 -22.80487 -21.99975 -21.43196 -20.87345 -19.15399 -18.82523 -18.03068 -17.62699 -17.46200 -16.72953 -16.11433 -15.94421 -15.61631 -15.44450 -15.05212 -14.83104 -14.63561 -14.01031 -13.78969 -13.41235 -13.26099 -13.24090 -13.18512 -12.86790 -12.71690 -12.64953 -12.15737 -12.04439 -12.02024 -11.88142 -11.66130 -11.40314 -11.28285 -10.80462 -10.73177 -10.65663 -9.78910 -8.92424 -7.92601 -5.26350 -0.20509 0.96825 1.17556 1.48384 1.49686 1.59101 1.82235 1.87429 2.49439 2.84716 3.17140 3.29394 3.35360 3.61298 3.64337 3.82460 3.87503 3.89873 3.93872 4.14452 4.22778 4.32237 4.41511 4.51921 4.61483 4.74093 4.82432 4.89811 4.95147 5.02513 5.07885 5.28245 5.32679 5.36864 5.45140 5.52688 5.64153 6.16180 6.27321 6.90982 7.00462 7.21854 7.68697 8.46319 9.22063 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.036989 B = 0.002963 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.797315 B = 9448.581190 C = 9695.901218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.248 5.248 4 N -0.075 5.075 5 N -0.301 5.301 6 C 0.016 3.984 7 C -0.078 4.078 8 C 0.602 3.398 9 O -0.559 6.559 10 N -0.662 5.662 11 C 0.121 3.879 12 H 0.114 0.886 13 C -0.182 4.182 14 H 0.126 0.874 15 C 0.190 3.810 16 N -0.617 5.617 17 C -0.241 4.241 18 H 0.084 0.916 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.146 3.854 26 C -0.155 4.155 27 H 0.146 0.854 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.236 0.764 34 H 0.422 0.578 35 H -0.002 1.002 36 H 0.051 0.949 37 H 0.249 0.751 38 H 0.021 0.979 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 2.015 20.022 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.022 4.022 3 N -0.047 5.047 4 N -0.055 5.055 5 N -0.162 5.162 6 C -0.145 4.145 7 C -0.213 4.213 8 C 0.387 3.613 9 O -0.437 6.437 10 N -0.312 5.312 11 C 0.014 3.986 12 H 0.132 0.868 13 C -0.203 4.203 14 H 0.144 0.856 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.370 4.370 18 H 0.102 0.898 19 C -0.255 4.255 20 N -0.594 5.594 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.190 1.190 25 C 0.021 3.979 26 C -0.176 4.176 27 H 0.164 0.836 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.253 0.747 34 H 0.261 0.739 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.910 1.128 21.138 21.367 hybrid contribution 0.366 0.195 -2.194 2.233 sum -2.544 1.323 18.943 19.159 Atomic orbital electron populations 1.22063 0.91802 1.05362 1.02349 1.22657 0.97433 0.74636 1.07453 1.48182 1.38955 1.14169 1.03366 1.78232 1.14736 1.00340 1.12196 1.74892 1.18103 1.09414 1.13797 1.24545 1.00222 0.98285 0.91456 1.21854 1.14470 0.94514 0.90457 1.16716 0.76998 0.84722 0.82874 1.90821 1.49022 1.20628 1.83253 1.44715 1.65389 1.15533 1.05541 1.21430 1.01048 0.98497 0.77628 0.86847 1.24388 0.95512 1.04897 0.95552 0.85619 1.20740 0.93478 0.91469 0.87964 1.45500 1.18837 1.64207 1.05538 1.19396 1.18400 1.15886 0.83285 0.89819 1.25706 1.01155 0.96827 1.01850 1.70131 1.32308 1.19712 1.37199 0.85077 0.78303 0.77131 0.78911 1.21288 1.22410 1.18951 1.21303 0.91000 0.98301 0.87339 1.24215 0.97809 0.98324 0.97225 0.83626 0.87259 0.91455 0.93293 0.86863 0.85003 0.74748 0.73935 0.98433 0.93072 0.94156 0.96089 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.10 1.52 6.53 86.38 0.56 2.09 16 3 N -0.25 -5.17 3.39 -335.42 -1.14 -6.31 16 4 N -0.07 -1.75 13.14 37.02 0.49 -1.27 16 5 N -0.30 -6.94 12.35 -57.50 -0.71 -7.65 16 6 C 0.02 0.28 11.54 84.18 0.97 1.25 16 7 C -0.08 -1.61 6.98 40.41 0.28 -1.33 16 8 C 0.60 14.14 7.80 86.61 0.68 14.82 16 9 O -0.56 -16.76 14.55 -4.10 -0.06 -16.82 16 10 N -0.66 -13.53 5.55 -445.99 -2.48 -16.01 16 11 C 0.12 3.40 5.97 44.99 0.27 3.67 16 12 H 0.11 3.82 7.43 -2.39 -0.02 3.80 16 13 C -0.18 -6.13 7.05 -9.92 -0.07 -6.20 16 14 H 0.13 3.72 8.14 -2.39 -0.02 3.71 16 15 C 0.19 8.99 5.69 86.55 0.49 9.49 16 16 N -0.62 -30.64 3.38 -688.04 -2.32 -32.96 16 17 C -0.24 -13.13 10.33 84.03 0.87 -12.27 16 18 H 0.08 4.34 7.87 -2.91 -0.02 4.31 16 19 C -0.06 -3.42 5.34 84.86 0.45 -2.97 16 20 N -0.95 -56.31 11.07 21.65 0.24 -56.07 16 21 Si 0.98 44.59 29.58 68.60 2.03 46.61 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C 0.15 5.61 7.04 86.54 0.61 6.22 16 26 C -0.16 -4.52 7.05 -9.93 -0.07 -4.59 16 27 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 2.01 6.64 -2.39 -0.02 1.99 16 32 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.24 1.87 7.56 -2.91 -0.02 1.84 16 34 H 0.42 5.45 7.86 -92.71 -0.73 4.72 16 35 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 36 H 0.05 2.76 6.66 -2.39 -0.02 2.74 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -72.61 331.48 2.18 -70.43 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.35 Total: 11.33 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.78 Total: 8.71 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -5.92 Total: -120.27 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.06 Total: -16.82 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.61 2.18 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958782194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.360 kcal (2) G-P(sol) polarization free energy of solvation -72.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.87 seconds