Wall clock time and date at job start Fri Apr 10 2020 14:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47129 * 2 1 4 4 N 1.28514 * 124.44481 * 270.27030 * 3 2 1 5 5 C 1.31132 * 109.05995 * 180.15129 * 4 3 2 6 6 C 1.40928 * 105.77481 * 359.63106 * 5 4 3 7 7 C 1.47802 * 127.23646 * 180.24452 * 6 5 4 8 8 O 1.21566 * 119.99629 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00199 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00259 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.51770 * 350.41513 * 10 9 7 12 12 C 1.53006 * 117.44299 * 205.00031 * 10 9 7 13 13 H 1.08995 * 119.53665 * 5.70913 * 12 10 9 14 14 C 1.54382 * 118.12077 * 160.80654 * 12 10 9 15 15 N 1.48148 * 104.61630 * 87.19137 * 14 12 10 16 16 C 1.36937 * 127.83659 * 140.41149 * 15 14 12 17 17 H 1.08001 * 120.00077 * 195.57226 * 16 15 14 18 18 C 1.38814 * 120.00102 * 15.57298 * 16 15 14 19 19 N 1.31612 * 120.00141 * 9.10108 * 18 16 15 20 20 Si 1.86804 * 120.00069 * 189.09834 * 18 16 15 21 21 H 1.48500 * 109.47076 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47070 * 119.99673 * 20 18 16 23 23 H 1.48499 * 109.47268 * 239.99997 * 20 18 16 24 24 C 1.48150 * 104.32474 * 320.41139 * 15 14 12 25 25 C 1.53005 * 117.44367 * 135.75838 * 10 9 7 26 26 H 1.08998 * 119.53954 * 355.88642 * 25 10 9 27 27 N 1.28588 * 124.44261 * 89.99666 * 3 2 1 28 28 H 1.08994 * 109.46963 * 59.99880 * 1 2 3 29 29 H 1.08996 * 109.46680 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46943 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.47229 * 240.00011 * 2 1 3 32 32 H 1.09004 * 109.47397 * 119.99855 * 2 1 3 33 33 H 1.07997 * 127.11184 * 179.89079 * 5 4 3 34 34 H 0.97004 * 119.99701 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.40666 * 205.97007 * 14 12 10 36 36 H 1.08997 * 110.41072 * 328.40832 * 14 12 10 37 37 H 0.96992 * 120.00495 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.40398 * 158.37103 * 24 15 14 39 39 H 1.08998 * 110.40429 * 280.80367 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2559 2.0682 -1.0598 5 6 2.6820 3.2586 -0.7119 6 6 2.6853 3.2677 0.6973 7 6 3.0791 4.3830 1.5836 8 8 3.4508 5.4370 1.1055 9 7 3.0252 4.2317 2.9217 10 6 3.4151 5.3373 3.8002 11 1 3.8883 6.1856 3.3057 12 6 3.8979 4.9827 5.2081 13 1 4.0278 3.9363 5.4840 14 6 4.7228 6.0343 5.9809 15 7 3.7115 6.8747 6.6635 16 6 3.7681 7.3959 7.9285 17 1 2.8719 7.7757 8.3966 18 6 4.9771 7.4361 8.6093 19 7 6.0960 7.1427 7.9814 20 14 5.0163 7.9068 10.4167 21 1 3.6353 8.1878 10.8850 22 1 5.5884 6.7876 11.2074 23 1 5.8560 9.1186 10.5946 24 6 2.6254 7.0233 5.6670 25 6 2.5149 5.6348 5.0012 26 1 1.5897 5.0735 5.1314 27 7 2.2607 2.0669 1.0605 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9671 4.0666 -1.3694 34 1 2.7275 3.3909 3.3031 35 1 5.3690 5.5483 6.7118 36 1 5.3137 6.6362 5.2905 37 1 6.9408 7.1704 8.4571 38 1 1.6893 7.2834 6.1612 39 1 2.8888 7.7796 4.9276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958791930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:43 Heat of formation + Delta-G solvation = 137.891441 kcal Electronic energy + Delta-G solvation = -22261.548706 eV Core-core repulsion = 18823.124575 eV Total energy + Delta-G solvation = -3438.424131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.90014 -39.71406 -38.24516 -35.22961 -34.52609 -33.12573 -32.37848 -30.83114 -30.10668 -27.14281 -26.07209 -25.20418 -24.06444 -21.93246 -21.70169 -20.49870 -20.18198 -19.28335 -17.99164 -17.25561 -16.85808 -16.82276 -16.17606 -15.38092 -14.73897 -14.71717 -14.59646 -14.33198 -13.64045 -13.28641 -13.23917 -12.74486 -12.73502 -12.21910 -12.16193 -11.95860 -11.56355 -11.50173 -11.26595 -10.99543 -10.84534 -10.68302 -10.39764 -10.23034 -10.17745 -10.08097 -9.73072 -9.70786 -9.19227 -8.73281 -8.34452 -6.85950 -5.79081 -3.13230 1.10710 1.73404 1.82296 3.01020 3.17166 3.38684 3.44613 3.47177 3.67015 4.28844 4.31293 4.33585 4.47664 4.57520 4.67425 4.83954 5.02786 5.14582 5.16858 5.37533 5.39659 5.40816 5.50214 5.57311 5.74428 5.84240 5.92012 6.12817 6.22572 6.26067 6.54016 6.70907 6.78216 6.91426 7.35877 7.49350 7.54423 7.72501 7.88836 8.16995 8.21121 9.11648 9.74349 10.51338 11.35406 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035870 B = 0.002733 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.418530 B =10244.026533 C =10538.697139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.142 5.142 4 N -0.292 5.292 5 C 0.035 3.965 6 C -0.042 4.042 7 C 0.610 3.390 8 O -0.524 6.524 9 N -0.681 5.681 10 C 0.094 3.906 11 H 0.135 0.865 12 C -0.178 4.178 13 H 0.104 0.896 14 C 0.185 3.815 15 N -0.593 5.593 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.156 3.844 25 C -0.181 4.181 26 H 0.103 0.897 27 N -0.250 5.250 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.209 0.791 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.254 0.746 38 H 0.052 0.948 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 -15.636 -16.328 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.045 5.045 4 N -0.131 5.131 5 C -0.148 4.148 6 C -0.205 4.205 7 C 0.393 3.607 8 O -0.398 6.398 9 N -0.329 5.329 10 C -0.011 4.011 11 H 0.152 0.848 12 C -0.199 4.199 13 H 0.122 0.878 14 C 0.059 3.941 15 N -0.317 5.317 16 C -0.354 4.354 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.029 3.971 25 C -0.203 4.203 26 H 0.121 0.879 27 N -0.099 5.099 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.225 0.775 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.724 -16.073 -16.439 24.963 hybrid contribution 0.154 0.426 1.067 1.159 sum -9.570 -15.647 -15.372 23.931 Atomic orbital electron populations 1.22198 0.92836 1.04105 1.03888 1.22112 0.96265 0.74097 1.06184 1.48267 1.43697 1.13416 0.99162 1.74001 1.17889 1.05619 1.15604 1.24867 1.01076 0.95211 0.93679 1.23123 1.08945 0.93504 0.94917 1.16563 0.77753 0.84912 0.81442 1.90829 1.47146 1.26624 1.75229 1.45203 1.65971 1.16840 1.04848 1.21919 1.02274 0.91484 0.85468 0.84764 1.24663 0.99033 1.00970 0.95235 0.87811 1.21077 0.90400 0.88913 0.93756 1.45188 1.17535 1.57254 1.11676 1.19039 0.93756 1.34345 0.88272 0.90462 1.24905 0.95065 1.01452 0.98903 1.69898 0.97183 1.54173 1.34838 0.86039 0.77471 0.77685 0.84504 1.20373 1.21651 1.21670 1.21125 0.93204 0.91337 0.91446 1.24381 0.94712 1.00841 1.00317 0.87869 1.74360 1.15057 1.04554 1.15895 0.91299 0.89374 0.91215 0.87046 0.87012 0.77451 0.76027 0.89006 0.95501 0.93573 0.92944 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.24 37.16 0.38 -0.36 16 2 C 0.13 0.69 7.24 -4.04 -0.03 0.66 16 3 N -0.14 -1.40 3.94 -10.61 -0.04 -1.44 16 4 N -0.29 -3.20 12.01 30.90 0.37 -2.83 16 5 C 0.04 0.40 12.04 -16.83 -0.20 0.20 16 6 C -0.04 -0.54 7.21 -82.68 -0.60 -1.14 16 7 C 0.61 9.28 7.83 -12.35 -0.10 9.18 16 8 O -0.52 -9.47 16.52 5.31 0.09 -9.38 16 9 N -0.68 -9.92 5.56 -54.76 -0.30 -10.23 16 10 C 0.09 1.62 5.97 -67.93 -0.41 1.21 16 11 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 12 C -0.18 -3.37 7.06 -89.22 -0.63 -4.00 16 13 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 14 C 0.18 4.45 5.70 -2.41 -0.01 4.43 16 15 N -0.59 -15.23 3.38 -168.86 -0.57 -15.80 16 16 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 17 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 18 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 19 N -0.91 -26.79 10.86 55.49 0.60 -26.19 16 20 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 C 0.16 3.30 7.04 -2.41 -0.02 3.29 16 25 C -0.18 -3.27 7.06 -89.21 -0.63 -3.89 16 26 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 27 N -0.25 -2.92 11.84 33.42 0.40 -2.53 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.21 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.40 5.12 8.60 -40.82 -0.35 4.77 16 35 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -33.30 336.27 -7.18 -40.48 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.27 Total: 3.11 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.49 Total: 2.86 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.45 Total: -59.02 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.30 -7.18 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958791930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.371 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds