Wall clock time and date at job start Fri Apr 10 2020 14:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47129 * 2 1 4 4 N 1.28514 * 124.44481 * 270.27030 * 3 2 1 5 5 C 1.31132 * 109.05995 * 180.15129 * 4 3 2 6 6 C 1.40928 * 105.77481 * 359.63106 * 5 4 3 7 7 C 1.47802 * 127.23646 * 180.24452 * 6 5 4 8 8 O 1.21566 * 119.99629 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00199 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00259 * 180.02562 * 9 7 6 11 11 H 1.08997 * 115.51770 * 350.41513 * 10 9 7 12 12 C 1.53006 * 117.44299 * 205.00031 * 10 9 7 13 13 H 1.08995 * 119.53665 * 5.70913 * 12 10 9 14 14 C 1.54382 * 118.12077 * 160.80654 * 12 10 9 15 15 N 1.48148 * 104.61630 * 87.19137 * 14 12 10 16 16 C 1.36937 * 127.83659 * 140.41149 * 15 14 12 17 17 H 1.08001 * 120.00077 * 195.57226 * 16 15 14 18 18 C 1.38814 * 120.00102 * 15.57298 * 16 15 14 19 19 N 1.31612 * 120.00141 * 9.10108 * 18 16 15 20 20 Si 1.86804 * 120.00069 * 189.09834 * 18 16 15 21 21 H 1.48500 * 109.47076 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47070 * 119.99673 * 20 18 16 23 23 H 1.48499 * 109.47268 * 239.99997 * 20 18 16 24 24 C 1.48150 * 104.32474 * 320.41139 * 15 14 12 25 25 C 1.53005 * 117.44367 * 135.75838 * 10 9 7 26 26 H 1.08998 * 119.53954 * 355.88642 * 25 10 9 27 27 N 1.28588 * 124.44261 * 89.99666 * 3 2 1 28 28 H 1.08994 * 109.46963 * 59.99880 * 1 2 3 29 29 H 1.08996 * 109.46680 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46943 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.47229 * 240.00011 * 2 1 3 32 32 H 1.09004 * 109.47397 * 119.99855 * 2 1 3 33 33 H 1.07997 * 127.11184 * 179.89079 * 5 4 3 34 34 H 0.97004 * 119.99701 * 359.97438 * 9 7 6 35 35 H 1.09002 * 110.40666 * 205.97007 * 14 12 10 36 36 H 1.08997 * 110.41072 * 328.40832 * 14 12 10 37 37 H 0.96992 * 120.00495 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.40398 * 158.37103 * 24 15 14 39 39 H 1.08998 * 110.40429 * 280.80367 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2559 2.0682 -1.0598 5 6 2.6820 3.2586 -0.7119 6 6 2.6853 3.2677 0.6973 7 6 3.0791 4.3830 1.5836 8 8 3.4508 5.4370 1.1055 9 7 3.0252 4.2317 2.9217 10 6 3.4151 5.3373 3.8002 11 1 3.8883 6.1856 3.3057 12 6 3.8979 4.9827 5.2081 13 1 4.0278 3.9363 5.4840 14 6 4.7228 6.0343 5.9809 15 7 3.7115 6.8747 6.6635 16 6 3.7681 7.3959 7.9285 17 1 2.8719 7.7757 8.3966 18 6 4.9771 7.4361 8.6093 19 7 6.0960 7.1427 7.9814 20 14 5.0163 7.9068 10.4167 21 1 3.6353 8.1878 10.8850 22 1 5.5884 6.7876 11.2074 23 1 5.8560 9.1186 10.5946 24 6 2.6254 7.0233 5.6670 25 6 2.5149 5.6348 5.0012 26 1 1.5897 5.0735 5.1314 27 7 2.2607 2.0669 1.0605 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9671 4.0666 -1.3694 34 1 2.7275 3.3909 3.3031 35 1 5.3690 5.5483 6.7118 36 1 5.3137 6.6362 5.2905 37 1 6.9408 7.1704 8.4571 38 1 1.6893 7.2834 6.1612 39 1 2.8888 7.7796 4.9276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958791930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:43 Heat of formation + Delta-G solvation = 114.081642 kcal Electronic energy + Delta-G solvation = -22262.581176 eV Core-core repulsion = 18823.124575 eV Total energy + Delta-G solvation = -3439.456602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.74331 -41.10042 -39.74714 -36.13879 -35.82448 -34.52632 -33.62559 -32.14599 -31.29438 -28.92615 -27.77088 -26.25254 -24.95208 -23.40777 -22.55422 -21.96195 -21.52557 -20.89895 -19.00438 -18.78266 -18.16151 -17.71963 -17.53783 -16.72589 -16.09336 -15.87707 -15.75527 -15.43104 -15.03730 -14.89136 -14.62727 -13.79685 -13.73170 -13.38554 -13.24810 -13.12366 -13.00647 -12.87916 -12.74211 -12.36240 -12.12631 -12.09097 -12.00584 -11.88566 -11.68394 -11.55271 -11.45396 -10.85961 -10.70444 -10.54725 -9.77274 -8.91510 -7.90960 -5.27695 0.14506 0.84997 1.15760 1.48275 1.48742 1.60071 1.82743 2.02656 2.49169 2.80704 2.84663 3.29548 3.57298 3.67856 3.82007 3.90206 3.91565 3.92713 4.03355 4.14209 4.25909 4.37916 4.51386 4.54358 4.68648 4.75446 4.78147 4.89087 4.95778 5.00381 5.16957 5.27464 5.37940 5.44863 5.51786 5.54174 5.65273 6.17388 6.32459 6.95410 7.01152 7.05866 7.67909 8.46314 9.23241 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035870 B = 0.002733 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.418530 B =10244.026533 C =10538.697139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.130 5.130 4 N -0.296 5.296 5 C 0.032 3.968 6 C -0.064 4.064 7 C 0.614 3.386 8 O -0.558 6.558 9 N -0.670 5.670 10 C 0.116 3.884 11 H 0.115 0.885 12 C -0.177 4.177 13 H 0.126 0.874 14 C 0.189 3.811 15 N -0.617 5.617 16 C -0.239 4.239 17 H 0.083 0.917 18 C -0.064 4.064 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.293 1.293 24 C 0.149 3.851 25 C -0.164 4.164 26 H 0.134 0.866 27 N -0.249 5.249 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.223 0.777 34 H 0.418 0.582 35 H 0.060 0.940 36 H -0.001 1.001 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 -17.714 -16.782 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.035 5.035 4 N -0.136 5.136 5 C -0.151 4.151 6 C -0.225 4.225 7 C 0.399 3.601 8 O -0.434 6.434 9 N -0.318 5.318 10 C 0.009 3.991 11 H 0.133 0.867 12 C -0.198 4.198 13 H 0.144 0.856 14 C 0.062 3.938 15 N -0.341 5.341 16 C -0.368 4.368 17 H 0.101 0.899 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.810 3.190 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.220 1.220 24 C 0.023 3.977 25 C -0.185 4.185 26 H 0.152 0.848 27 N -0.099 5.099 28 H 0.076 0.924 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.240 0.760 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.017 0.983 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.603 -18.179 -16.914 27.407 hybrid contribution 0.679 1.001 1.104 1.638 sum -10.924 -17.177 -15.810 25.775 Atomic orbital electron populations 1.22179 0.92008 1.05603 1.02631 1.22679 0.96920 0.72064 1.08272 1.48857 1.41868 1.14339 0.98449 1.74024 1.18072 1.05516 1.15946 1.25164 1.00720 0.95850 0.93363 1.22741 1.11162 0.93577 0.95063 1.16784 0.76795 0.85039 0.81480 1.90813 1.48638 1.28203 1.75794 1.44995 1.65786 1.16565 1.04496 1.21483 1.01122 0.91558 0.84950 0.86737 1.24344 0.98608 1.00505 0.96337 0.85624 1.20808 0.90536 0.89536 0.92871 1.45485 1.18828 1.57789 1.11984 1.19433 0.94052 1.33899 0.89405 0.89885 1.25768 0.94748 1.02054 1.03140 1.70095 0.97532 1.55611 1.36338 0.84970 0.77897 0.76872 0.79299 1.18791 1.21662 1.21994 1.21258 0.92409 0.93198 0.90795 1.24288 0.95355 0.98778 1.00041 0.84819 1.74314 1.14805 1.04171 1.16593 0.92353 0.86511 0.92572 0.84856 0.85134 0.76044 0.74489 0.92162 0.98304 0.94083 0.91694 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 71.98 0.74 -0.24 16 2 C 0.12 0.86 7.24 86.38 0.63 1.48 16 3 N -0.13 -2.25 3.94 -187.48 -0.74 -2.99 16 4 N -0.30 -5.90 12.01 -56.16 -0.67 -6.58 16 5 C 0.03 0.68 12.04 85.46 1.03 1.71 16 6 C -0.06 -1.58 7.21 42.24 0.30 -1.28 16 7 C 0.61 18.14 7.83 86.77 0.68 18.82 16 8 O -0.56 -20.15 16.52 -3.92 -0.06 -20.21 16 9 N -0.67 -18.47 5.56 -445.44 -2.48 -20.94 16 10 C 0.12 3.88 5.97 45.00 0.27 4.14 16 11 H 0.11 4.41 7.40 -2.39 -0.02 4.40 16 12 C -0.18 -6.60 7.06 -9.88 -0.07 -6.67 16 13 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 14 C 0.19 9.38 5.70 86.53 0.49 9.87 16 15 N -0.62 -32.15 3.38 -688.16 -2.33 -34.47 16 16 C -0.24 -13.44 10.35 84.03 0.87 -12.57 16 17 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 18 C -0.06 -3.61 5.40 84.86 0.46 -3.16 16 19 N -0.95 -57.31 10.86 21.65 0.24 -57.08 16 20 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.15 6.27 7.04 86.53 0.61 6.88 16 25 C -0.16 -5.62 7.06 -9.88 -0.07 -5.69 16 26 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 27 N -0.25 -5.29 11.84 -48.17 -0.57 -5.86 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.42 9.53 8.60 -92.71 -0.80 8.73 16 35 H 0.06 3.36 6.51 -2.39 -0.02 3.34 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.42 336.27 1.63 -71.79 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.28 Total: 15.51 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.94 Total: 13.30 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.55 Total: -127.92 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.42 1.63 -71.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958791930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.876 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds