Wall clock time and date at job start Fri Apr 10 2020 14:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47155 * 2 1 4 4 C 1.34821 * 126.59434 * 125.00073 * 3 2 1 5 5 C 1.36589 * 106.84004 * 179.97438 * 4 3 2 6 6 C 1.47527 * 125.77339 * 179.97438 * 5 4 3 7 7 O 1.21595 * 119.99628 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99979 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99597 * 179.97438 * 8 6 5 10 10 H 1.08998 * 115.51647 * 350.58955 * 9 8 6 11 11 C 1.52995 * 117.44312 * 205.16632 * 9 8 6 12 12 H 1.09005 * 119.54349 * 4.12310 * 11 9 8 13 13 C 1.54393 * 118.12249 * 159.21648 * 11 9 8 14 14 N 1.48141 * 104.61815 * 87.19470 * 13 11 9 15 15 C 1.36933 * 127.84200 * 140.41623 * 14 13 11 16 16 H 1.07998 * 120.00234 * 195.57316 * 15 14 13 17 17 C 1.38816 * 119.99672 * 15.57058 * 15 14 13 18 18 N 1.31615 * 119.99969 * 9.09943 * 17 15 14 19 19 Si 1.86805 * 119.99923 * 189.09734 * 17 15 14 20 20 H 1.48501 * 109.46830 * 90.00114 * 19 17 15 21 21 H 1.48502 * 109.47056 * 210.00015 * 19 17 15 22 22 H 1.48498 * 109.47220 * 329.99873 * 19 17 15 23 23 C 1.48148 * 104.32242 * 320.41197 * 14 13 11 24 24 C 1.53002 * 117.43760 * 136.00006 * 9 8 6 25 25 H 1.08995 * 119.54676 * 355.88170 * 24 9 8 26 26 N 1.34402 * 108.46046 * 0.02562 * 5 4 3 27 27 N 1.28760 * 109.52378 * 359.72900 * 26 5 4 28 28 H 1.08998 * 109.46731 * 60.00254 * 1 2 3 29 29 H 1.08991 * 109.46979 * 299.99821 * 1 2 3 30 30 H 1.08996 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47010 * 120.00211 * 2 1 3 32 32 H 1.09000 * 109.47120 * 239.99964 * 2 1 3 33 33 H 1.07995 * 126.57995 * 359.97438 * 4 3 2 34 34 H 0.96999 * 120.00519 * 0.02562 * 8 6 5 35 35 H 1.09001 * 110.40550 * 205.98169 * 13 11 9 36 36 H 1.09001 * 110.40475 * 328.29070 * 13 11 9 37 37 H 0.97005 * 119.99643 * 180.02562 * 18 17 15 38 38 H 1.08999 * 110.40526 * 158.36748 * 23 14 13 39 39 H 1.09003 * 110.41210 * 280.68507 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8717 1.9320 0.8867 5 6 3.0510 3.2321 0.5082 6 6 3.9077 4.2192 1.1924 7 8 4.5313 3.8980 2.1856 8 7 3.9991 5.4768 0.7165 9 6 4.8495 6.4571 1.3964 10 1 5.2469 6.1445 2.3620 11 6 4.4970 7.9359 1.2242 12 1 3.6012 8.2138 0.6689 13 6 5.0291 8.9376 2.2718 14 7 6.3723 9.3183 1.7764 15 6 6.9551 10.5573 1.7967 16 1 7.8241 10.7554 1.1868 17 6 6.4289 11.5587 2.6013 18 7 5.4869 11.2737 3.4753 19 14 7.0577 13.3106 2.4436 20 1 6.2470 14.0385 1.4345 21 1 6.9465 13.9965 3.7561 22 1 8.4793 13.2896 2.0149 23 6 6.9422 8.0545 1.2541 24 6 5.7368 7.3465 0.5232 25 1 5.7648 7.1853 -0.5544 26 7 2.3140 3.4604 -0.5924 27 7 1.6924 2.3831 -0.9252 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.3262 1.4397 1.7337 34 1 3.5013 5.7331 -0.0756 35 1 4.3812 9.8126 2.3243 36 1 5.1035 8.4614 3.2494 37 1 5.1190 11.9736 4.0372 38 1 7.7377 8.2633 0.5388 39 1 7.3192 7.4407 2.0722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962163486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:45 Heat of formation + Delta-G solvation = 124.999225 kcal Electronic energy + Delta-G solvation = -22110.779097 eV Core-core repulsion = 18671.795917 eV Total energy + Delta-G solvation = -3438.983180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43977 -39.56004 -38.08856 -35.80079 -34.42957 -32.62100 -31.66724 -30.77905 -29.92919 -26.96940 -25.75285 -25.01597 -23.95516 -22.07752 -21.58504 -20.43190 -20.14210 -19.24131 -18.15676 -16.84002 -16.49955 -16.42255 -16.23805 -15.07625 -14.98428 -14.69255 -14.49852 -14.21538 -13.58131 -13.35333 -13.17216 -12.89555 -12.69140 -12.49956 -12.18062 -12.04803 -11.50189 -11.48296 -11.39702 -10.96027 -10.80842 -10.68671 -10.33032 -10.17780 -10.13473 -10.02609 -9.69681 -9.52815 -9.17250 -8.70498 -8.26759 -6.84100 -5.76847 -3.11075 0.88234 1.55346 1.70019 3.11404 3.23848 3.41159 3.46088 3.48116 3.88186 3.99552 4.25992 4.39489 4.47253 4.50150 4.54408 4.72636 4.89762 4.96889 5.20614 5.23167 5.41809 5.45310 5.46299 5.57981 5.64183 5.78837 5.91516 6.04564 6.19891 6.28488 6.57036 6.73195 6.84211 6.93934 7.39054 7.51800 7.57089 7.74789 7.78205 8.23605 8.24886 9.13853 9.76561 10.53798 11.37547 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.052429 B = 0.002532 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.927790 B =11056.896681 C =11113.198123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.093 3.907 5 C -0.097 4.097 6 C 0.606 3.394 7 O -0.538 6.538 8 N -0.681 5.681 9 C 0.092 3.908 10 H 0.134 0.866 11 C -0.179 4.179 12 H 0.102 0.898 13 C 0.185 3.815 14 N -0.593 5.593 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.915 5.915 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.158 3.842 24 C -0.184 4.184 25 H 0.108 0.892 26 N -0.205 5.205 27 N -0.065 5.065 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.205 0.795 34 H 0.407 0.593 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.254 0.746 38 H 0.050 0.950 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.256 -23.854 -6.771 26.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.148 5.148 4 C -0.064 4.064 5 C -0.237 4.237 6 C 0.390 3.610 7 O -0.414 6.414 8 N -0.328 5.328 9 C -0.013 4.013 10 H 0.152 0.848 11 C -0.200 4.200 12 H 0.120 0.880 13 C 0.059 3.941 14 N -0.316 5.316 15 C -0.354 4.354 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.561 5.561 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.031 3.969 24 C -0.206 4.206 25 H 0.126 0.874 26 N -0.079 5.079 27 N -0.045 5.045 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.222 0.778 34 H 0.242 0.758 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.621 -23.515 -7.179 26.402 hybrid contribution 0.392 0.552 0.284 0.734 sum -9.229 -22.962 -6.895 25.690 Atomic orbital electron populations 1.22092 0.92699 1.03710 1.04126 1.22043 0.96913 0.76176 1.05160 1.50617 1.31837 1.12412 1.19972 1.23400 0.92954 0.94070 0.95954 1.21527 1.07749 0.95145 0.99277 1.16685 0.80089 0.81170 0.83076 1.90814 1.46060 1.79046 1.25509 1.45178 1.46956 1.09660 1.31017 1.21937 0.96297 0.85337 0.97736 0.84847 1.24630 0.98631 0.92419 1.04315 0.87958 1.21071 0.87423 0.94621 0.90954 1.45125 1.12916 1.03241 1.70361 1.18996 1.11016 0.85558 1.19845 0.90496 1.24907 0.99676 0.98873 0.96877 1.69899 1.30405 1.31837 1.23974 0.86098 0.78302 0.84302 0.76926 1.21520 1.21672 1.20537 1.21710 0.92121 0.87975 0.95109 1.25095 0.95295 1.02200 0.97983 0.87426 1.74651 1.04784 1.18170 1.10271 1.81958 1.20565 0.90307 1.11701 0.90685 0.91629 0.89859 0.87616 0.88317 0.77781 0.75830 0.89071 0.95521 0.93538 0.93126 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.12 37.16 0.38 -0.22 16 2 C 0.12 0.42 7.26 -4.04 -0.03 0.39 16 3 N -0.36 -3.01 3.69 -61.06 -0.23 -3.23 16 4 C 0.09 0.86 11.27 -16.83 -0.19 0.67 16 5 C -0.10 -1.24 6.99 -83.55 -0.58 -1.83 16 6 C 0.61 9.25 7.82 -12.48 -0.10 9.15 16 7 O -0.54 -9.55 16.43 5.28 0.09 -9.47 16 8 N -0.68 -10.34 5.56 -54.85 -0.30 -10.65 16 9 C 0.09 1.63 5.93 -67.93 -0.40 1.23 16 10 H 0.13 2.58 7.40 -51.93 -0.38 2.20 16 11 C -0.18 -3.49 6.97 -89.29 -0.62 -4.11 16 12 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 13 C 0.19 4.53 5.70 -2.41 -0.01 4.52 16 14 N -0.59 -15.42 3.38 -166.69 -0.56 -15.99 16 15 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 16 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 17 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 18 N -0.92 -27.02 10.86 55.49 0.60 -26.42 16 19 Si 0.91 22.10 29.56 -169.99 -5.03 17.08 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.16 3.40 7.10 -0.54 0.00 3.39 16 24 C -0.18 -3.39 7.34 -87.42 -0.64 -4.04 16 25 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 26 N -0.20 -2.72 12.04 32.85 0.40 -2.32 16 27 N -0.06 -0.76 13.65 60.35 0.82 0.06 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.11 0.10 8.08 -51.93 -0.42 -0.32 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.21 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.41 5.56 8.51 -40.82 -0.35 5.21 16 35 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -34.11 336.74 -6.86 -40.97 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.26 Total: 2.50 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.46 Total: 2.39 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.73 Total: -58.54 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.11 -6.86 -40.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962163486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.967 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds