Wall clock time and date at job start Fri Apr 10 2020 14:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47211 * 2 1 4 4 C 1.34811 * 126.59718 * 124.99745 * 3 2 1 5 5 C 1.36597 * 106.84178 * 180.02562 * 4 3 2 6 6 C 1.47522 * 125.76932 * 179.97438 * 5 4 3 7 7 O 1.21596 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.47869 * 126.94204 * 359.97438 * 8 6 5 10 10 C 1.58438 * 104.82832 * 182.30812 * 9 8 6 11 11 H 1.09004 * 116.62205 * 159.51493 * 10 9 8 12 12 C 1.57432 * 99.62416 * 32.32616 * 10 9 8 13 13 C 1.49289 * 126.94654 * 180.02562 * 8 6 5 14 14 H 1.09001 * 116.14977 * 15.83463 * 13 8 6 15 15 C 1.56021 * 104.09236 * 246.69520 * 13 8 6 16 16 N 1.47867 * 105.10039 * 287.91871 * 15 13 8 17 17 C 1.36943 * 126.94301 * 181.97834 * 16 15 13 18 18 H 1.08002 * 119.99788 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99622 * 0.30365 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00011 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99811 * 21 19 17 25 25 N 1.34402 * 108.46070 * 0.24598 * 5 4 3 26 26 N 1.28769 * 109.51836 * 359.58314 * 25 5 4 27 27 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47052 * 299.99923 * 1 2 3 29 29 H 1.09003 * 109.47548 * 59.99846 * 1 2 3 30 30 H 1.08997 * 109.46879 * 240.00257 * 2 1 3 31 31 H 1.09002 * 109.47233 * 119.99713 * 2 1 3 32 32 H 1.08003 * 126.57735 * 0.02562 * 4 3 2 33 33 H 1.08999 * 110.31556 * 300.91134 * 9 8 6 34 34 H 1.08999 * 110.31643 * 63.10181 * 9 8 6 35 35 H 1.09001 * 112.53430 * 192.40658 * 12 10 9 36 36 H 1.09008 * 112.31560 * 64.87226 * 12 10 9 37 37 H 1.08996 * 110.31219 * 169.01474 * 15 13 8 38 38 H 1.08993 * 110.31535 * 46.82593 * 15 13 8 39 39 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0499 3.2325 0.5087 6 6 3.9063 4.2196 1.1932 7 8 4.5297 3.8986 2.1866 8 7 3.9969 5.4776 0.7181 9 6 3.3107 6.0307 -0.4693 10 6 3.8329 7.5223 -0.5812 11 1 3.7334 8.0029 -1.5545 12 6 5.2901 7.3342 -0.0158 13 6 4.8110 6.5939 1.2835 14 1 5.5861 6.3104 1.9955 15 6 3.7498 7.6191 1.7906 16 7 3.1740 8.2150 0.5659 17 6 2.2243 9.1992 0.4976 18 1 1.8816 9.5532 -0.4635 19 6 1.7063 9.7459 1.6637 20 7 2.1240 9.3146 2.8349 21 14 0.4164 11.0939 1.5705 22 1 -0.9370 10.4832 1.5501 23 1 0.5414 11.9812 2.7546 24 1 0.6196 11.8887 0.3327 25 7 2.3088 3.4624 -0.5886 26 7 1.6877 2.3847 -0.9218 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3266 1.4395 1.7333 33 1 3.5854 5.4680 -1.3614 34 1 2.2304 6.0104 -0.3257 35 1 5.7788 8.2834 0.2037 36 1 5.9026 6.6969 -0.6539 37 1 4.2269 8.3885 2.3976 38 1 2.9753 7.1097 2.3638 39 1 1.7617 9.6964 3.6497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032705480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:22 Heat of formation + Delta-G solvation = 127.599312 kcal Electronic energy + Delta-G solvation = -23532.243717 eV Core-core repulsion = 20093.373286 eV Total energy + Delta-G solvation = -3438.870432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11530 -39.73430 -37.60671 -35.53671 -33.53512 -31.61098 -31.37366 -30.18951 -28.75353 -28.33300 -25.12846 -24.79753 -24.12689 -22.64171 -21.74185 -20.45984 -19.70114 -18.66849 -17.65613 -16.69591 -16.18119 -16.00695 -15.70464 -15.11037 -14.64636 -14.50355 -14.29192 -13.89912 -13.32852 -13.16967 -12.89234 -12.67195 -12.31905 -12.09702 -11.84014 -11.71909 -11.52543 -11.23786 -11.07651 -10.94764 -10.78455 -10.61860 -10.50398 -10.38365 -10.13875 -10.00043 -9.68063 -9.54285 -9.19621 -8.63597 -7.90162 -6.83344 -5.69773 -3.03254 1.17826 1.94318 1.98955 3.39331 3.42562 3.47197 3.49254 3.67324 4.10542 4.31902 4.46608 4.49175 4.68824 4.75714 4.99633 5.13487 5.15043 5.20701 5.27325 5.44101 5.46076 5.62507 5.68852 5.73920 5.84671 5.86454 6.21919 6.32420 6.34433 6.43046 6.50965 6.65017 6.71487 6.86595 7.49422 7.55803 7.78686 8.01406 8.13892 8.18257 8.59342 9.17763 9.78633 10.48406 11.42608 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.004424 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.874563 B = 6328.229409 C = 6999.734973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.366 5.366 4 C 0.085 3.915 5 C -0.087 4.087 6 C 0.612 3.388 7 O -0.558 6.558 8 N -0.589 5.589 9 C 0.094 3.906 10 C 0.139 3.861 11 H 0.107 0.893 12 C -0.150 4.150 13 C 0.099 3.901 14 H 0.114 0.886 15 C 0.175 3.825 16 N -0.598 5.598 17 C -0.228 4.228 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 N -0.194 5.194 26 N -0.072 5.072 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 -18.024 -5.958 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.152 5.152 4 C -0.071 4.071 5 C -0.226 4.226 6 C 0.398 3.602 7 O -0.437 6.437 8 N -0.320 5.320 9 C -0.031 4.031 10 C 0.030 3.970 11 H 0.125 0.875 12 C -0.190 4.190 13 C -0.004 4.004 14 H 0.132 0.868 15 C 0.050 3.950 16 N -0.322 5.322 17 C -0.356 4.356 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.068 5.068 26 N -0.052 5.052 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.219 0.781 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.268 -17.786 -6.480 18.972 hybrid contribution -0.398 0.143 0.994 1.080 sum 0.869 -17.643 -5.486 18.497 Atomic orbital electron populations 1.22088 0.92854 1.03465 1.04203 1.21969 0.96809 0.76514 1.04815 1.50585 1.31995 1.12234 1.20377 1.23318 0.93560 0.94243 0.96013 1.21558 1.07186 0.94791 0.99080 1.16324 0.80590 0.80253 0.83026 1.90757 1.47827 1.79031 1.26109 1.48931 1.45170 1.08549 1.29309 1.23758 0.97678 0.95836 0.85822 1.23786 0.90348 0.89590 0.93312 0.87486 1.24170 0.97816 1.00138 0.96828 1.24361 0.94767 0.84935 0.96297 0.86812 1.21922 0.92445 0.92063 0.88585 1.45261 1.45328 1.41900 0.99689 1.19068 1.13195 1.10329 0.92964 0.90138 1.24800 1.00202 1.00069 0.95283 1.69912 1.45658 1.44694 0.96533 0.86123 0.81377 0.81358 0.76909 1.21705 1.21749 1.20638 1.74801 1.04292 1.17294 1.10369 1.81961 1.20864 0.90341 1.12066 0.90065 0.91643 0.90677 0.88562 0.87890 0.78104 0.92317 0.90589 0.89624 0.91648 0.92489 0.93547 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.12 37.16 0.38 -0.65 16 2 C 0.12 0.74 7.26 -4.04 -0.03 0.71 16 3 N -0.37 -4.17 3.69 -61.06 -0.23 -4.39 16 4 C 0.09 1.08 11.27 -16.84 -0.19 0.89 16 5 C -0.09 -1.47 6.87 -83.55 -0.57 -2.04 16 6 C 0.61 12.05 7.89 -12.48 -0.10 11.95 16 7 O -0.56 -11.85 17.21 5.28 0.09 -11.76 16 8 N -0.59 -11.80 2.95 -156.44 -0.46 -12.26 16 9 C 0.09 1.83 5.07 -0.29 0.00 1.83 16 10 C 0.14 2.74 5.63 -60.94 -0.34 2.40 16 11 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 12 C -0.15 -2.65 6.85 -22.13 -0.15 -2.80 16 13 C 0.10 1.98 5.19 -62.58 -0.32 1.66 16 14 H 0.11 2.17 8.05 -51.93 -0.42 1.75 16 15 C 0.17 4.32 4.75 -1.68 -0.01 4.31 16 16 N -0.60 -14.92 3.02 -154.60 -0.47 -15.39 16 17 C -0.23 -6.23 10.38 -15.06 -0.16 -6.39 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -27.36 10.56 55.49 0.59 -26.78 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 N -0.19 -3.38 10.03 32.85 0.33 -3.05 16 26 N -0.07 -1.09 13.65 60.35 0.82 -0.27 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.20 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 34 H 0.08 1.67 7.89 -51.93 -0.41 1.26 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.06 1.53 7.45 -51.93 -0.39 1.14 16 38 H 0.05 1.32 7.68 -51.93 -0.40 0.92 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -34.49 326.78 -6.38 -40.87 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.36 Total: -0.66 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -1.60 Total: 11.56 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.58 Total: -62.14 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.49 -6.38 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032705480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.468 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds