Wall clock time and date at job start Fri Apr 10 2020 14:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47211 * 2 1 4 4 C 1.34811 * 126.59718 * 124.99745 * 3 2 1 5 5 C 1.36597 * 106.84178 * 180.02562 * 4 3 2 6 6 C 1.47522 * 125.76932 * 179.97438 * 5 4 3 7 7 O 1.21596 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.47869 * 126.94204 * 359.97438 * 8 6 5 10 10 C 1.58438 * 104.82832 * 182.30812 * 9 8 6 11 11 H 1.09004 * 116.62205 * 159.51493 * 10 9 8 12 12 C 1.57432 * 99.62416 * 32.32616 * 10 9 8 13 13 C 1.49289 * 126.94654 * 180.02562 * 8 6 5 14 14 H 1.09001 * 116.14977 * 15.83463 * 13 8 6 15 15 C 1.56021 * 104.09236 * 246.69520 * 13 8 6 16 16 N 1.47867 * 105.10039 * 287.91871 * 15 13 8 17 17 C 1.36943 * 126.94301 * 181.97834 * 16 15 13 18 18 H 1.08002 * 119.99788 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99622 * 0.30365 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00011 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99811 * 21 19 17 25 25 N 1.34402 * 108.46070 * 0.24598 * 5 4 3 26 26 N 1.28769 * 109.51836 * 359.58314 * 25 5 4 27 27 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47052 * 299.99923 * 1 2 3 29 29 H 1.09003 * 109.47548 * 59.99846 * 1 2 3 30 30 H 1.08997 * 109.46879 * 240.00257 * 2 1 3 31 31 H 1.09002 * 109.47233 * 119.99713 * 2 1 3 32 32 H 1.08003 * 126.57735 * 0.02562 * 4 3 2 33 33 H 1.08999 * 110.31556 * 300.91134 * 9 8 6 34 34 H 1.08999 * 110.31643 * 63.10181 * 9 8 6 35 35 H 1.09001 * 112.53430 * 192.40658 * 12 10 9 36 36 H 1.09008 * 112.31560 * 64.87226 * 12 10 9 37 37 H 1.08996 * 110.31219 * 169.01474 * 15 13 8 38 38 H 1.08993 * 110.31535 * 46.82593 * 15 13 8 39 39 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0499 3.2325 0.5087 6 6 3.9063 4.2196 1.1932 7 8 4.5297 3.8986 2.1866 8 7 3.9969 5.4776 0.7181 9 6 3.3107 6.0307 -0.4693 10 6 3.8329 7.5223 -0.5812 11 1 3.7334 8.0029 -1.5545 12 6 5.2901 7.3342 -0.0158 13 6 4.8110 6.5939 1.2835 14 1 5.5861 6.3104 1.9955 15 6 3.7498 7.6191 1.7906 16 7 3.1740 8.2150 0.5659 17 6 2.2243 9.1992 0.4976 18 1 1.8816 9.5532 -0.4635 19 6 1.7063 9.7459 1.6637 20 7 2.1240 9.3146 2.8349 21 14 0.4164 11.0939 1.5705 22 1 -0.9370 10.4832 1.5501 23 1 0.5414 11.9812 2.7546 24 1 0.6196 11.8887 0.3327 25 7 2.3088 3.4624 -0.5886 26 7 1.6877 2.3847 -0.9218 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3266 1.4395 1.7333 33 1 3.5854 5.4680 -1.3614 34 1 2.2304 6.0104 -0.3257 35 1 5.7788 8.2834 0.2037 36 1 5.9026 6.6969 -0.6539 37 1 4.2269 8.3885 2.3976 38 1 2.9753 7.1097 2.3638 39 1 1.7617 9.6964 3.6497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032705480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:21 Heat of formation + Delta-G solvation = 103.376992 kcal Electronic energy + Delta-G solvation = -23533.294076 eV Core-core repulsion = 20093.373286 eV Total energy + Delta-G solvation = -3439.920790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = -0.58 seconds Orbital eigenvalues (eV) -43.21603 -41.34699 -39.19907 -36.36957 -35.42384 -33.36851 -32.32548 -31.43665 -30.36285 -30.10047 -26.95949 -25.77115 -25.52470 -24.19463 -22.68157 -21.92988 -21.35088 -20.20249 -19.12996 -18.23458 -17.51199 -17.27474 -17.17528 -16.52670 -16.11445 -15.72501 -15.65671 -15.24852 -14.96002 -14.65175 -13.85098 -13.79072 -13.58981 -13.43442 -13.27594 -13.10916 -12.99448 -12.84972 -12.68920 -12.55850 -12.27418 -12.13481 -12.06444 -11.97908 -11.80743 -11.51395 -11.29929 -11.22020 -10.72175 -10.35774 -9.53263 -8.87919 -7.83049 -5.18225 0.15846 0.64455 1.14919 1.46634 1.48543 1.57114 1.93382 2.25058 2.49760 3.14640 3.33626 3.37848 3.45654 3.71058 3.83573 3.87256 3.96921 3.99789 4.04486 4.22050 4.28648 4.32435 4.54177 4.66151 4.73069 4.73959 4.89923 4.95219 5.01554 5.04051 5.14861 5.22191 5.29494 5.45720 5.51031 5.55827 5.66701 6.11846 6.57977 6.84554 7.05141 7.11904 7.72175 8.43297 9.28308 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.004424 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.874563 B = 6328.229409 C = 6999.734973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.348 5.348 4 C 0.110 3.890 5 C -0.125 4.125 6 C 0.609 3.391 7 O -0.580 6.580 8 N -0.597 5.597 9 C 0.111 3.889 10 C 0.132 3.868 11 H 0.133 0.867 12 C -0.125 4.125 13 C 0.104 3.896 14 H 0.124 0.876 15 C 0.188 3.812 16 N -0.617 5.617 17 C -0.231 4.231 18 H 0.093 0.907 19 C -0.070 4.070 20 N -0.957 5.957 21 Si 0.977 3.023 22 H -0.293 1.293 23 H -0.298 1.298 24 H -0.262 1.262 25 N -0.223 5.223 26 N -0.090 5.090 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.239 0.761 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.025 0.975 38 H -0.006 1.006 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -20.121 -7.631 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.134 5.134 4 C -0.048 4.048 5 C -0.264 4.264 6 C 0.397 3.603 7 O -0.461 6.461 8 N -0.328 5.328 9 C -0.014 4.014 10 C 0.026 3.974 11 H 0.151 0.849 12 C -0.164 4.164 13 C 0.001 3.999 14 H 0.142 0.858 15 C 0.062 3.938 16 N -0.341 5.341 17 C -0.360 4.360 18 H 0.111 0.889 19 C -0.263 4.263 20 N -0.606 5.606 21 Si 0.806 3.194 22 H -0.221 1.221 23 H -0.225 1.225 24 H -0.186 1.186 25 N -0.096 5.096 26 N -0.071 5.071 27 H 0.131 0.869 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.255 0.745 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.043 0.957 38 H 0.012 0.988 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.793 -19.924 -8.229 21.631 hybrid contribution -0.624 0.602 1.502 1.734 sum 1.169 -19.323 -6.727 20.494 Atomic orbital electron populations 1.22092 0.92906 1.04982 1.02416 1.22591 0.96768 0.73869 1.07869 1.50976 1.30490 1.13256 1.18653 1.23791 0.92238 0.92750 0.96037 1.21413 1.08711 0.95966 1.00343 1.16730 0.80417 0.80459 0.82718 1.90723 1.48843 1.79517 1.26986 1.48998 1.45454 1.08824 1.29529 1.23483 0.95646 0.95819 0.86475 1.24189 0.91194 0.89081 0.92971 0.84895 1.24066 0.96677 1.00518 0.95150 1.24246 0.93566 0.84281 0.97759 0.85788 1.21540 0.92027 0.91935 0.88304 1.45521 1.45342 1.41797 1.01480 1.19544 1.13024 1.10108 0.93318 0.88947 1.25644 1.02732 1.02791 0.95114 1.70152 1.47276 1.46256 0.96925 0.85087 0.78471 0.78688 0.77156 1.22056 1.22464 1.18637 1.74753 1.05062 1.18650 1.11114 1.81853 1.21129 0.90830 1.13276 0.86895 0.93119 0.92744 0.86361 0.83989 0.74521 0.89912 0.93907 0.89277 0.88026 0.95665 0.98782 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.12 71.98 0.73 -0.89 16 2 C 0.11 0.91 7.26 86.38 0.63 1.54 16 3 N -0.35 -7.08 3.69 -347.10 -1.28 -8.36 16 4 C 0.11 2.53 11.27 83.85 0.95 3.48 16 5 C -0.12 -4.14 6.87 40.82 0.28 -3.86 16 6 C 0.61 23.96 7.89 86.69 0.68 24.64 16 7 O -0.58 -24.53 17.21 -4.02 -0.07 -24.60 16 8 N -0.60 -23.98 2.95 -767.12 -2.27 -26.24 16 9 C 0.11 4.25 5.07 88.06 0.45 4.70 16 10 C 0.13 5.08 5.63 47.95 0.27 5.35 16 11 H 0.13 4.39 8.14 -2.38 -0.02 4.37 16 12 C -0.13 -4.16 6.85 33.57 0.23 -3.93 16 13 C 0.10 4.20 5.19 46.91 0.24 4.44 16 14 H 0.12 4.72 8.05 -2.39 -0.02 4.70 16 15 C 0.19 9.72 4.75 87.16 0.41 10.13 16 16 N -0.62 -31.36 3.02 -643.03 -1.94 -33.30 16 17 C -0.23 -12.84 10.38 84.03 0.87 -11.97 16 18 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 20 N -0.96 -59.65 10.56 21.65 0.23 -59.42 16 21 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 N -0.22 -7.69 10.03 -49.99 -0.50 -8.19 16 26 N -0.09 -2.66 13.65 37.02 0.51 -2.15 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.14 0.21 8.08 -2.39 -0.02 0.19 16 32 H 0.24 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.08 2.79 7.70 -2.39 -0.02 2.77 16 34 H 0.04 1.93 7.89 -2.39 -0.02 1.92 16 35 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 37 H 0.03 1.44 7.45 -2.39 -0.02 1.42 16 38 H -0.01 -0.37 7.68 -2.39 -0.02 -0.39 16 39 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -79.98 326.78 3.96 -76.01 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.06 Total: 7.51 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 6.21 Total: 30.03 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -5.26 Total: -137.67 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -79.98 3.96 -76.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032705480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.389 kcal (2) G-P(sol) polarization free energy of solvation -79.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.58 seconds