Wall clock time and date at job start Fri Apr 10 2020 14:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28713 * 126.03666 * 2 1 4 4 N 1.28501 * 110.63998 * 179.97438 * 3 2 1 5 5 C 1.33323 * 109.43969 * 359.72892 * 4 3 2 6 6 C 1.37003 * 106.37029 * 0.42732 * 5 4 3 7 7 C 1.47234 * 127.19109 * 179.84613 * 6 5 4 8 8 O 1.21620 * 119.99853 * 174.09043 * 7 6 5 9 9 N 1.34777 * 120.00233 * 354.09765 * 7 6 5 10 10 C 1.47887 * 134.34510 * 184.68931 * 9 7 6 11 11 C 1.52378 * 85.58932 * 156.50856 * 10 9 7 12 12 C 1.47897 * 134.33567 * 4.67933 * 9 7 6 13 13 C 1.53648 * 116.38680 * 141.35858 * 11 10 9 14 14 C 1.54605 * 102.73242 * 95.48655 * 13 11 10 15 15 N 1.47136 * 107.36399 * 20.75255 * 14 13 11 16 16 C 1.36935 * 125.58903 * 180.93337 * 15 14 13 17 17 H 1.08000 * 120.00579 * 169.60339 * 16 15 14 18 18 C 1.38820 * 119.99612 * 349.60180 * 16 15 14 19 19 N 1.31616 * 119.99728 * 169.24706 * 18 16 15 20 20 Si 1.86797 * 120.00048 * 348.96648 * 18 16 15 21 21 H 1.48503 * 109.47277 * 185.66845 * 20 18 16 22 22 H 1.48501 * 109.47462 * 305.67171 * 20 18 16 23 23 H 1.48499 * 109.47035 * 65.67154 * 20 18 16 24 24 C 1.47724 * 108.82488 * 1.19029 * 15 14 13 25 25 H 1.08993 * 109.47006 * 269.03984 * 1 2 3 26 26 H 1.09006 * 109.46911 * 29.03707 * 1 2 3 27 27 H 1.08996 * 109.46862 * 149.03398 * 1 2 3 28 28 H 1.08007 * 126.81786 * 180.27568 * 5 4 3 29 29 H 1.08997 * 113.85255 * 42.34266 * 10 9 7 30 30 H 1.09001 * 113.96708 * 270.68645 * 10 9 7 31 31 H 1.09000 * 113.84982 * 89.32837 * 12 9 7 32 32 H 1.08992 * 113.85512 * 317.65837 * 12 9 7 33 33 H 1.08999 * 110.76322 * 337.17327 * 13 11 10 34 34 H 1.09004 * 110.91809 * 213.86832 * 13 11 10 35 35 H 1.09004 * 109.86777 * 261.30627 * 14 13 11 36 36 H 1.09001 * 109.98019 * 140.26247 * 14 13 11 37 37 H 0.97001 * 120.00005 * 354.58419 * 19 18 16 38 38 H 1.09001 * 110.39805 * 96.07236 * 24 15 14 39 39 H 1.08998 * 110.40237 * 218.48166 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6302 0.0069 6 6 2.2712 -1.1081 0.0005 7 6 1.8463 -2.5178 0.0006 8 8 0.6671 -2.7974 0.1030 9 7 2.7640 -3.4984 -0.1125 10 6 2.6940 -4.9706 -0.2341 11 6 4.0705 -4.8649 -0.8791 12 6 4.2417 -3.5300 -0.1646 13 6 5.0795 -5.9665 -0.5196 14 6 4.9203 -6.9684 -1.6863 15 7 4.3138 -6.2395 -2.8114 16 6 3.9921 -6.7775 -4.0288 17 1 3.3999 -6.2094 -4.7309 18 6 4.4275 -8.0533 -4.3606 19 7 3.9498 -8.6542 -5.4297 20 14 5.6969 -8.9138 -3.2942 21 1 6.0925 -10.1952 -3.9319 22 1 6.8917 -8.0442 -3.1475 23 1 5.1156 -9.1862 -1.9551 24 6 4.1144 -4.8306 -2.4145 25 1 -0.3633 -0.0172 1.0275 26 1 -0.3633 0.8986 -0.4988 27 1 -0.3633 -0.8812 -0.5288 28 1 4.4633 -1.2149 0.0130 29 1 1.9153 -5.3204 -0.9118 30 1 2.6942 -5.4943 0.7218 31 1 4.7155 -3.6113 0.8137 32 1 4.6776 -2.7492 -0.7876 33 1 4.8188 -6.4344 0.4297 34 1 6.0941 -5.5694 -0.4871 35 1 4.2704 -7.7894 -1.3835 36 1 5.8956 -7.3569 -1.9794 37 1 3.2374 -8.2400 -5.9414 38 1 4.9466 -4.2172 -2.7598 39 1 3.1725 -4.4533 -2.8126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072683946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:21 Heat of formation + Delta-G solvation = 151.743421 kcal Electronic energy + Delta-G solvation = -23474.238875 eV Core-core repulsion = 20036.415411 eV Total energy + Delta-G solvation = -3437.823464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.53728 -40.85670 -38.56236 -36.18659 -34.85047 -32.65061 -31.87496 -30.09699 -28.95737 -28.28242 -26.68754 -26.40126 -23.99027 -23.11301 -22.33222 -20.94830 -20.02350 -18.79383 -17.76381 -17.46842 -17.13962 -16.96916 -16.15516 -15.67657 -15.33771 -15.11201 -14.56965 -13.94605 -13.74919 -13.64207 -13.50804 -13.25666 -13.00657 -12.90820 -12.34051 -12.27457 -11.98605 -11.73171 -11.42849 -11.21949 -11.06755 -10.76135 -10.60134 -10.48369 -10.18349 -9.95917 -9.76320 -9.31318 -9.05831 -8.89759 -8.84616 -7.07809 -6.34533 -3.27870 0.68537 1.76392 2.05669 2.57878 2.85031 3.35667 3.43234 3.66464 3.82078 4.12582 4.24598 4.46715 4.56944 4.58870 4.67902 4.74289 4.76188 5.07342 5.13954 5.15102 5.16981 5.20356 5.30440 5.43762 5.53094 5.63355 5.65663 5.74282 5.81268 5.96726 6.09085 6.10104 6.26027 6.40056 6.48873 6.65275 7.35800 7.59190 7.72722 8.08647 8.28865 8.99738 9.49536 10.16004 11.16439 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.003839 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.092521 B = 7291.058695 C = 7479.679344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.257 5.257 3 N -0.062 5.062 4 N -0.274 5.274 5 C -0.002 4.002 6 C -0.061 4.061 7 C 0.614 3.386 8 O -0.540 6.540 9 N -0.625 5.625 10 C 0.136 3.864 11 C -0.107 4.107 12 C 0.106 3.894 13 C -0.113 4.113 14 C 0.099 3.901 15 N -0.612 5.612 16 C -0.322 4.322 17 H 0.078 0.922 18 C -0.023 4.023 19 N -0.930 5.930 20 Si 1.078 2.922 21 H -0.303 1.303 22 H -0.297 1.297 23 H -0.287 1.287 24 C 0.162 3.838 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.200 0.800 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.032 0.968 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 13.260 15.147 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.054 5.054 3 N -0.043 5.043 4 N -0.137 5.137 5 C -0.162 4.162 6 C -0.196 4.196 7 C 0.402 3.598 8 O -0.418 6.418 9 N -0.359 5.359 10 C 0.016 3.984 11 C -0.108 4.108 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.025 4.025 15 N -0.340 5.340 16 C -0.449 4.449 17 H 0.095 0.905 18 C -0.222 4.222 19 N -0.572 5.572 20 Si 0.913 3.087 21 H -0.231 1.231 22 H -0.226 1.226 23 H -0.215 1.215 24 C 0.036 3.964 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.217 0.783 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.585 13.406 15.219 20.343 hybrid contribution -1.061 0.394 -0.117 1.137 sum -2.646 13.800 15.102 20.628 Atomic orbital electron populations 1.22535 0.71355 1.06642 1.05709 1.47648 1.09918 1.03423 1.44368 1.78262 0.96779 1.11484 1.17767 1.74901 1.09118 1.12599 1.17040 1.24178 0.96985 0.91859 1.03219 1.21911 0.91542 0.90696 1.15403 1.16229 0.84803 0.81914 0.76893 1.90806 1.16411 1.83370 1.51235 1.49813 1.07440 1.07576 1.71085 1.23075 0.97676 0.77323 1.00374 1.22560 0.95352 0.94404 0.98529 1.23377 0.79666 0.97741 1.00847 1.22347 0.98442 0.95612 0.98753 1.22177 0.97148 0.95263 0.87929 1.44865 1.73786 1.03645 1.11699 1.20179 1.31989 1.00948 0.91784 0.90460 1.25873 1.02620 0.94176 0.99517 1.70882 1.28264 1.39985 1.18047 0.83733 0.75844 0.74877 0.74245 1.23118 1.22620 1.21455 1.21120 0.99002 0.88163 0.88104 0.88603 0.87882 0.86758 0.78301 0.88929 0.89079 0.88392 0.89081 0.90670 0.90456 0.93288 0.94619 0.92852 0.94987 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.84 59.85 0.65 1.29 16 2 N -0.26 -3.06 3.79 -64.12 -0.24 -3.30 16 3 N -0.06 -0.82 13.14 60.35 0.79 -0.03 16 4 N -0.27 -3.71 12.35 30.47 0.38 -3.33 16 5 C 0.00 -0.02 11.08 -17.35 -0.19 -0.22 16 6 C -0.06 -0.76 6.98 -82.33 -0.57 -1.34 16 7 C 0.61 8.37 8.03 -12.61 -0.10 8.26 16 8 O -0.54 -8.62 15.68 5.26 0.08 -8.54 16 9 N -0.62 -7.65 3.62 -188.24 -0.68 -8.34 16 10 C 0.14 1.76 8.16 -3.60 -0.03 1.73 16 11 C -0.11 -1.40 0.99 -154.72 -0.15 -1.55 16 12 C 0.11 1.01 6.57 -3.59 -0.02 0.99 16 13 C -0.11 -1.50 6.35 -25.55 -0.16 -1.66 16 14 C 0.10 1.94 4.67 -2.85 -0.01 1.92 16 15 N -0.61 -13.95 3.35 -170.35 -0.57 -14.52 16 16 C -0.32 -8.93 10.59 -15.06 -0.16 -9.09 16 17 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 18 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 19 N -0.93 -28.87 13.70 55.49 0.76 -28.11 16 20 Si 1.08 25.91 24.50 -169.99 -4.16 21.75 16 21 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.30 -6.79 6.56 56.52 0.37 -6.42 16 23 H -0.29 -6.20 5.51 56.52 0.31 -5.89 16 24 C 0.16 2.91 6.65 -3.04 -0.02 2.89 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.11 1.04 6.64 -51.93 -0.34 0.69 16 28 H 0.20 1.65 5.33 -52.48 -0.28 1.37 16 29 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 30 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.76 6.32 -51.93 -0.33 0.44 16 33 H 0.07 0.81 7.99 -51.93 -0.41 0.39 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 1.01 6.47 -51.93 -0.34 0.67 16 36 H 0.04 0.75 3.74 -51.93 -0.19 0.56 16 37 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -34.95 313.94 -4.76 -39.71 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.97 Total: -2.50 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.88 Total: 2.48 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.43 Total: -57.63 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -4.16 Total: 21.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.95 -4.76 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072683946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.453 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds