Wall clock time and date at job start Fri Apr 10 2020 14:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28713 * 126.03666 * 2 1 4 4 N 1.28501 * 110.63998 * 179.97438 * 3 2 1 5 5 C 1.33323 * 109.43969 * 359.72892 * 4 3 2 6 6 C 1.37003 * 106.37029 * 0.42732 * 5 4 3 7 7 C 1.47234 * 127.19109 * 179.84613 * 6 5 4 8 8 O 1.21620 * 119.99853 * 174.09043 * 7 6 5 9 9 N 1.34777 * 120.00233 * 354.09765 * 7 6 5 10 10 C 1.47887 * 134.34510 * 184.68931 * 9 7 6 11 11 C 1.52378 * 85.58932 * 156.50856 * 10 9 7 12 12 C 1.47897 * 134.33567 * 4.67933 * 9 7 6 13 13 C 1.53648 * 116.38680 * 141.35858 * 11 10 9 14 14 C 1.54605 * 102.73242 * 95.48655 * 13 11 10 15 15 N 1.47136 * 107.36399 * 20.75255 * 14 13 11 16 16 C 1.36935 * 125.58903 * 180.93337 * 15 14 13 17 17 H 1.08000 * 120.00579 * 169.60339 * 16 15 14 18 18 C 1.38820 * 119.99612 * 349.60180 * 16 15 14 19 19 N 1.31616 * 119.99728 * 169.24706 * 18 16 15 20 20 Si 1.86797 * 120.00048 * 348.96648 * 18 16 15 21 21 H 1.48503 * 109.47277 * 185.66845 * 20 18 16 22 22 H 1.48501 * 109.47462 * 305.67171 * 20 18 16 23 23 H 1.48499 * 109.47035 * 65.67154 * 20 18 16 24 24 C 1.47724 * 108.82488 * 1.19029 * 15 14 13 25 25 H 1.08993 * 109.47006 * 269.03984 * 1 2 3 26 26 H 1.09006 * 109.46911 * 29.03707 * 1 2 3 27 27 H 1.08996 * 109.46862 * 149.03398 * 1 2 3 28 28 H 1.08007 * 126.81786 * 180.27568 * 5 4 3 29 29 H 1.08997 * 113.85255 * 42.34266 * 10 9 7 30 30 H 1.09001 * 113.96708 * 270.68645 * 10 9 7 31 31 H 1.09000 * 113.84982 * 89.32837 * 12 9 7 32 32 H 1.08992 * 113.85512 * 317.65837 * 12 9 7 33 33 H 1.08999 * 110.76322 * 337.17327 * 13 11 10 34 34 H 1.09004 * 110.91809 * 213.86832 * 13 11 10 35 35 H 1.09004 * 109.86777 * 261.30627 * 14 13 11 36 36 H 1.09001 * 109.98019 * 140.26247 * 14 13 11 37 37 H 0.97001 * 120.00005 * 354.58419 * 19 18 16 38 38 H 1.09001 * 110.39805 * 96.07236 * 24 15 14 39 39 H 1.08998 * 110.40237 * 218.48166 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6302 0.0069 6 6 2.2712 -1.1081 0.0005 7 6 1.8463 -2.5178 0.0006 8 8 0.6671 -2.7974 0.1030 9 7 2.7640 -3.4984 -0.1125 10 6 2.6940 -4.9706 -0.2341 11 6 4.0705 -4.8649 -0.8791 12 6 4.2417 -3.5300 -0.1646 13 6 5.0795 -5.9665 -0.5196 14 6 4.9203 -6.9684 -1.6863 15 7 4.3138 -6.2395 -2.8114 16 6 3.9921 -6.7775 -4.0288 17 1 3.3999 -6.2094 -4.7309 18 6 4.4275 -8.0533 -4.3606 19 7 3.9498 -8.6542 -5.4297 20 14 5.6969 -8.9138 -3.2942 21 1 6.0925 -10.1952 -3.9319 22 1 6.8917 -8.0442 -3.1475 23 1 5.1156 -9.1862 -1.9551 24 6 4.1144 -4.8306 -2.4145 25 1 -0.3633 -0.0172 1.0275 26 1 -0.3633 0.8986 -0.4988 27 1 -0.3633 -0.8812 -0.5288 28 1 4.4633 -1.2149 0.0130 29 1 1.9153 -5.3204 -0.9118 30 1 2.6942 -5.4943 0.7218 31 1 4.7155 -3.6113 0.8137 32 1 4.6776 -2.7492 -0.7876 33 1 4.8188 -6.4344 0.4297 34 1 6.0941 -5.5694 -0.4871 35 1 4.2704 -7.7894 -1.3835 36 1 5.8956 -7.3569 -1.9794 37 1 3.2374 -8.2400 -5.9414 38 1 4.9466 -4.2172 -2.7598 39 1 3.1725 -4.4533 -2.8126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072683946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:20 Heat of formation + Delta-G solvation = 123.870143 kcal Electronic energy + Delta-G solvation = -23475.447551 eV Core-core repulsion = 20036.415411 eV Total energy + Delta-G solvation = -3439.032140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.44456 -41.89754 -39.69761 -37.59628 -35.72203 -34.47968 -33.01773 -31.54445 -30.22406 -29.10435 -27.90207 -27.48035 -25.35136 -24.28696 -23.26142 -22.67665 -21.01483 -20.00820 -19.36700 -18.59381 -18.09353 -17.94258 -17.21650 -16.85338 -16.68102 -16.49044 -15.51598 -15.49548 -14.99129 -14.82219 -14.56515 -14.32792 -14.16697 -13.95220 -13.54749 -13.32859 -13.25856 -13.03449 -12.96228 -12.55953 -12.27848 -11.98605 -11.91438 -11.39341 -11.36736 -11.31093 -11.24674 -11.00151 -10.69868 -10.62920 -9.86670 -9.03331 -8.64261 -5.46603 -0.23460 0.92042 1.13386 1.43286 1.55049 1.69897 1.76919 1.88373 2.60093 2.93030 3.09613 3.24073 3.30584 3.47078 3.54910 3.66425 3.84599 3.90652 3.99533 4.14909 4.26480 4.41297 4.46478 4.51760 4.54527 4.61954 4.69631 4.70382 4.78502 4.87625 4.91736 5.01836 5.05108 5.21210 5.24075 5.32831 5.55219 6.11323 6.41666 6.72865 6.85302 7.16448 7.46311 8.10428 8.89160 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.003839 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.092521 B = 7291.058695 C = 7479.679344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.255 5.255 3 N -0.076 5.076 4 N -0.299 5.299 5 C 0.011 3.989 6 C -0.076 4.076 7 C 0.612 3.388 8 O -0.575 6.575 9 N -0.626 5.626 10 C 0.133 3.867 11 C -0.099 4.099 12 C 0.120 3.880 13 C -0.095 4.095 14 C 0.083 3.917 15 N -0.635 5.635 16 C -0.310 4.310 17 H 0.035 0.965 18 C -0.086 4.086 19 N -0.971 5.971 20 Si 1.120 2.880 21 H -0.320 1.320 22 H -0.275 1.275 23 H -0.246 1.246 24 C 0.156 3.844 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.232 0.768 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.244 0.756 38 H 0.043 0.957 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 14.228 18.972 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.053 5.053 3 N -0.057 5.057 4 N -0.160 5.160 5 C -0.150 4.150 6 C -0.210 4.210 7 C 0.400 3.600 8 O -0.455 6.455 9 N -0.360 5.360 10 C 0.011 3.989 11 C -0.101 4.101 12 C -0.001 4.001 13 C -0.133 4.133 14 C -0.040 4.040 15 N -0.363 5.363 16 C -0.438 4.438 17 H 0.053 0.947 18 C -0.277 4.277 19 N -0.616 5.616 20 Si 0.947 3.053 21 H -0.250 1.250 22 H -0.202 1.202 23 H -0.170 1.170 24 C 0.031 3.969 25 H 0.131 0.869 26 H 0.144 0.856 27 H 0.121 0.879 28 H 0.249 0.751 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.605 14.444 19.088 23.945 hybrid contribution -1.859 0.175 -1.405 2.337 sum -1.254 14.619 17.683 22.978 Atomic orbital electron populations 1.22778 0.69796 1.07238 1.06962 1.47957 1.10948 1.03117 1.43256 1.78224 0.97088 1.11965 1.18419 1.74883 1.09341 1.13735 1.18090 1.24688 0.97621 0.91259 1.01431 1.21916 0.92188 0.90295 1.16638 1.16367 0.84537 0.82498 0.76593 1.90787 1.17852 1.83898 1.52976 1.49875 1.08796 1.07045 1.70238 1.23159 0.96412 0.78110 1.01173 1.22329 0.95854 0.97203 0.94696 1.23665 0.78002 0.95417 1.02979 1.22382 1.00006 0.93536 0.97392 1.22400 0.95885 0.96820 0.88912 1.44939 1.74074 1.06265 1.11016 1.20034 1.29899 1.00511 0.93380 0.94663 1.27337 1.04521 0.95565 1.00283 1.71003 1.29441 1.41016 1.20093 0.83303 0.74260 0.73232 0.74471 1.25045 1.20240 1.17049 1.21265 0.97776 0.85635 0.92190 0.86941 0.85594 0.87894 0.75149 0.92666 0.85775 0.83451 0.87505 0.86756 0.87383 0.94541 0.95083 0.94760 0.93967 0.96401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.84 127.77 1.39 2.49 16 2 N -0.26 -5.73 3.79 -356.76 -1.35 -7.08 16 3 N -0.08 -1.91 13.14 37.02 0.49 -1.42 16 4 N -0.30 -7.45 12.35 -57.50 -0.71 -8.16 16 5 C 0.01 0.21 11.08 84.18 0.93 1.15 16 6 C -0.08 -1.74 6.98 40.41 0.28 -1.46 16 7 C 0.61 15.62 8.03 86.61 0.70 16.32 16 8 O -0.57 -18.11 15.68 -4.10 -0.06 -18.17 16 9 N -0.63 -13.37 3.62 -867.71 -3.14 -16.51 16 10 C 0.13 3.05 8.16 85.91 0.70 3.75 16 11 C -0.10 -2.20 0.99 -52.08 -0.05 -2.25 16 12 C 0.12 1.61 6.57 85.90 0.56 2.17 16 13 C -0.10 -1.95 6.35 31.36 0.20 -1.75 16 14 C 0.08 2.98 4.67 86.80 0.41 3.39 16 15 N -0.63 -28.66 3.35 -692.87 -2.32 -30.98 16 16 C -0.31 -17.83 10.59 84.04 0.89 -16.94 16 17 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 18 C -0.09 -5.08 5.50 84.86 0.47 -4.62 16 19 N -0.97 -63.19 13.70 21.65 0.30 -62.90 16 20 Si 1.12 51.86 24.50 68.60 1.68 53.54 16 21 H -0.32 -15.66 7.11 99.48 0.71 -14.95 16 22 H -0.27 -11.60 6.56 99.48 0.65 -10.95 16 23 H -0.25 -9.68 5.51 99.48 0.55 -9.13 16 24 C 0.16 5.43 6.65 86.36 0.57 6.00 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.10 1.87 6.64 -2.39 -0.02 1.85 16 28 H 0.23 2.66 5.33 -2.91 -0.02 2.64 16 29 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.12 2.08 8.04 -2.39 -0.02 2.06 16 31 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.17 6.32 -2.39 -0.02 1.15 16 33 H 0.11 1.57 7.99 -2.39 -0.02 1.55 16 34 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.39 6.47 -2.38 -0.02 1.37 16 36 H 0.03 1.18 3.74 -2.39 -0.01 1.17 16 37 H 0.24 16.06 8.73 -92.71 -0.81 15.26 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 Total: -1.00 -83.25 313.94 2.75 -80.50 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 0.83 Total: 2.94 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.04 Total: 8.24 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -6.74 Total: -127.05 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.06 Total: -18.17 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 1.68 Total: 53.54 kcal Total: -83.25 2.75 -80.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072683946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.372 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds