Wall clock time and date at job start Fri Apr 10 2020 14:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46986 * 110.99622 * 2 1 4 4 C 1.53453 * 109.68067 * 53.58884 * 3 2 1 5 5 N 1.46298 * 108.26822 * 49.23171 * 4 3 2 6 6 C 1.35211 * 124.01253 * 344.27902 * 5 4 3 7 7 N 1.30266 * 107.63215 * 179.37226 * 6 5 4 8 8 N 1.28949 * 109.79152 * 359.88484 * 7 6 5 9 9 C 1.31974 * 109.53062 * 359.96739 * 8 7 6 10 10 C 1.47448 * 126.66649 * 179.90242 * 9 8 7 11 11 O 1.21601 * 120.00113 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99858 * 0.02833 * 10 9 8 13 13 C 1.47584 * 134.49098 * 179.97438 * 12 10 9 14 14 C 1.53947 * 86.11565 * 155.35611 * 13 12 10 15 15 C 1.50697 * 113.73728 * 137.95278 * 14 13 12 16 16 H 1.08000 * 120.00521 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99910 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00457 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47090 * 59.99825 * 19 17 15 21 21 H 1.48500 * 109.47260 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47307 * 300.00349 * 19 17 15 23 23 C 1.47576 * 134.49404 * 359.97438 * 12 10 9 24 24 C 1.47368 * 111.00153 * 124.24134 * 2 1 3 25 25 H 1.08999 * 109.47435 * 299.70821 * 1 2 3 26 26 H 1.08998 * 109.47525 * 59.71603 * 1 2 3 27 27 H 1.09004 * 109.46970 * 179.71169 * 1 2 3 28 28 H 1.09005 * 109.43169 * 173.65121 * 3 2 1 29 29 H 1.08996 * 109.43654 * 293.55938 * 3 2 1 30 30 H 1.09001 * 109.72086 * 169.12759 * 4 3 2 31 31 H 1.09002 * 109.71579 * 289.72729 * 4 3 2 32 32 H 1.09001 * 113.76908 * 41.05531 * 13 12 10 33 33 H 1.08997 * 113.76763 * 269.65793 * 13 12 10 34 34 H 1.08999 * 113.74195 * 269.25717 * 14 13 12 35 35 H 0.97003 * 120.00094 * 180.02562 * 18 17 15 36 36 H 1.09003 * 113.77250 * 90.33955 * 23 12 10 37 37 H 1.08995 * 113.76824 * 318.94314 * 23 12 10 38 38 H 1.09004 * 109.74551 * 166.28577 * 24 2 1 39 39 H 1.08997 * 109.74204 * 45.57186 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3723 0.0000 4 6 1.3801 2.1621 1.1628 5 7 1.5113 1.3622 2.3807 6 6 1.7973 0.0407 2.3906 7 7 1.8512 -0.3421 3.6345 8 7 1.6183 0.6611 4.4105 9 6 1.4038 1.7411 3.6831 10 6 1.1002 3.0942 4.1842 11 8 0.9226 4.0071 3.4007 12 7 1.0197 3.3193 5.5106 13 6 0.7444 4.5062 6.3434 14 6 0.2768 3.5116 7.4214 15 6 0.7390 3.8627 8.8121 16 1 1.3414 4.7442 8.9746 17 6 0.3926 3.0585 9.8772 18 7 -0.3406 1.9848 9.6794 19 14 0.9661 3.4932 11.6011 20 1 0.4399 4.8305 11.9753 21 1 0.4643 2.4770 12.5606 22 1 2.4504 3.5175 11.6377 23 6 1.1714 2.4779 6.7135 24 6 1.9971 -0.7741 1.1373 25 1 -0.3634 0.5093 0.8926 26 1 -0.3634 0.5182 -0.8874 27 1 -0.3633 -1.0277 -0.0052 28 1 3.0794 1.3448 0.1137 29 1 1.7421 1.8581 -0.9422 30 1 1.9060 3.1092 1.2833 31 1 0.3254 2.3502 0.9620 32 1 -0.0527 5.1401 5.9550 33 1 1.6381 5.0657 6.6199 34 1 -0.7869 3.2787 7.3719 35 1 -0.5846 1.4192 10.4288 36 1 2.1904 2.4416 7.0987 37 1 0.7151 1.4924 6.6206 38 1 3.0596 -0.9677 0.9894 39 1 1.4587 -1.7180 1.2220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278096903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:12 Heat of formation + Delta-G solvation = 100.303410 kcal Electronic energy + Delta-G solvation = -23429.149067 eV Core-core repulsion = 19989.094996 eV Total energy + Delta-G solvation = -3440.054071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.35742 -39.40370 -38.79579 -37.14249 -34.34218 -32.70399 -31.69784 -30.33719 -29.16923 -27.78131 -25.55447 -25.16513 -25.06068 -23.51415 -22.79421 -20.56829 -19.76107 -18.75253 -17.20868 -17.01126 -16.73950 -16.34210 -15.99375 -15.57116 -15.30820 -14.96857 -14.69230 -14.46366 -14.10462 -13.48455 -13.22125 -12.78441 -12.60699 -12.36327 -12.23381 -12.14362 -12.03176 -11.61327 -11.51542 -11.28479 -10.94602 -10.88194 -10.54667 -10.35635 -10.27186 -9.95837 -9.36134 -9.24882 -9.14194 -9.07509 -8.56814 -8.00640 -6.14500 -4.21246 1.25006 2.06918 2.51078 3.26504 3.28441 3.34020 3.34971 3.39887 3.49202 3.89273 4.05846 4.35374 4.41624 4.48880 4.56511 4.87932 4.94405 4.99989 5.13542 5.15531 5.19219 5.26273 5.35310 5.48888 5.64832 5.89081 6.03983 6.08520 6.20451 6.26860 6.29168 6.30519 6.57964 6.65765 6.69585 6.94677 7.54422 7.81605 8.14277 8.18219 8.38335 8.64371 8.81368 9.45465 10.95017 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032807 B = 0.003672 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.273672 B = 7622.978014 C = 8142.199575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.531 5.531 3 C 0.038 3.962 4 C 0.070 3.930 5 N -0.443 5.443 6 C 0.143 3.857 7 N -0.281 5.281 8 N -0.235 5.235 9 C 0.150 3.850 10 C 0.610 3.390 11 O -0.564 6.564 12 N -0.609 5.609 13 C 0.108 3.892 14 C 0.033 3.967 15 C -0.523 4.523 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.882 5.882 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.112 3.888 24 C 0.142 3.858 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -3.186 -19.227 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.252 5.252 3 C -0.091 4.091 4 C -0.054 4.054 5 N -0.134 5.134 6 C -0.126 4.126 7 N -0.124 5.124 8 N -0.081 5.081 9 C -0.117 4.117 10 C 0.394 3.606 11 O -0.444 6.444 12 N -0.340 5.340 13 C -0.013 4.013 14 C 0.013 3.987 15 C -0.561 4.561 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.518 5.518 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.009 4.009 24 C 0.011 3.989 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.392 -3.949 -18.982 19.682 hybrid contribution -0.099 1.323 0.610 1.460 sum 3.293 -2.626 -18.372 18.848 Atomic orbital electron populations 1.22574 0.86296 1.03311 1.01413 1.62487 1.09189 1.13162 1.40339 1.22740 1.00948 0.87852 0.97532 1.22818 1.04536 0.96328 0.81716 1.45881 1.50856 1.09321 1.07369 1.25805 1.04112 0.83712 0.98942 1.74263 1.18203 1.22092 0.97891 1.75115 1.13981 0.94610 1.24435 1.24407 1.08088 0.98372 0.80845 1.16022 0.78733 0.83307 0.82498 1.90745 1.54184 1.43779 1.55674 1.50319 1.64477 1.16646 1.02590 1.23701 0.99660 0.89786 0.88125 1.20556 0.96724 0.89213 0.92184 1.20868 1.33973 1.10695 0.90557 0.91836 1.25023 0.94349 0.94781 0.99297 1.69945 1.35863 1.14024 1.32005 0.86590 0.79206 0.78189 0.83638 1.20103 1.21200 1.20047 1.23927 1.01425 0.97529 0.78031 1.21073 1.03365 0.95189 0.79265 0.95014 0.90353 0.90315 0.89033 0.87259 0.86974 0.88634 0.91549 0.90070 0.91549 0.92486 0.90301 0.90315 0.86957 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.88 60.06 0.53 0.63 16 2 N -0.53 -4.26 5.22 -243.52 -1.27 -5.53 16 3 C 0.04 0.28 5.99 -3.54 -0.02 0.26 16 4 C 0.07 0.77 5.47 -3.92 -0.02 0.75 16 5 N -0.44 -6.65 2.88 -111.33 -0.32 -6.97 16 6 C 0.14 2.03 7.23 -155.40 -1.12 0.91 16 7 N -0.28 -5.09 12.21 32.73 0.40 -4.69 16 8 N -0.24 -4.81 10.71 32.33 0.35 -4.46 16 9 C 0.15 2.86 7.90 -154.76 -1.22 1.64 16 10 C 0.61 12.58 8.05 -12.51 -0.10 12.48 16 11 O -0.56 -11.91 16.32 5.28 0.09 -11.83 16 12 N -0.61 -12.99 3.61 -179.69 -0.65 -13.64 16 13 C 0.11 2.23 8.39 -2.97 -0.02 2.20 16 14 C 0.03 0.77 3.62 -90.84 -0.33 0.45 16 15 C -0.52 -13.40 8.77 -34.44 -0.30 -13.70 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 18 N -0.88 -24.50 13.27 55.43 0.74 -23.76 16 19 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.11 2.55 7.47 -2.98 -0.02 2.53 16 24 C 0.14 1.30 6.20 -4.66 -0.03 1.27 16 25 H 0.03 0.32 5.89 -51.93 -0.31 0.02 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 28 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.11 1.29 7.53 -51.93 -0.39 0.90 16 31 H 0.10 1.02 7.01 -51.93 -0.36 0.66 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 34 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 37 H 0.08 1.89 7.51 -51.93 -0.39 1.50 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.91 7.95 -51.93 -0.41 0.50 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -31.30 323.50 -8.77 -40.08 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.20 Total: -0.50 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -2.76 Total: 11.14 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.76 Total: -59.06 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.30 -8.77 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278096903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.379 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds