Wall clock time and date at job start Fri Apr 10 2020 14:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35932 * 117.00602 * 2 1 4 4 C 1.39057 * 120.47007 * 0.27095 * 3 2 1 5 5 C 1.38604 * 118.38687 * 180.23979 * 4 3 2 6 6 S 1.76199 * 120.37769 * 179.78440 * 5 4 3 7 7 O 1.42096 * 106.40321 * 156.18423 * 6 5 4 8 8 O 1.42108 * 106.39883 * 23.26432 * 6 5 4 9 9 N 1.65597 * 107.22117 * 269.72581 * 6 5 4 10 10 C 1.36943 * 119.99912 * 64.72090 * 9 6 5 11 11 H 1.08002 * 119.99793 * 0.27628 * 10 9 6 12 12 C 1.38811 * 120.00012 * 180.27700 * 10 9 6 13 13 N 1.31624 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47290 * 120.00044 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00049 * 14 12 10 18 18 C 1.38201 * 119.24472 * 359.51311 * 5 4 3 19 19 N 1.31887 * 120.90125 * 0.23095 * 18 5 4 20 20 C 1.31918 * 121.75917 * 0.02562 * 19 18 5 21 21 Cl 1.73599 * 119.66857 * 179.97438 * 20 19 18 22 22 H 1.09008 * 109.47229 * 300.00131 * 1 2 3 23 23 H 1.09000 * 109.47036 * 60.00204 * 1 2 3 24 24 H 1.08998 * 109.47430 * 180.02562 * 1 2 3 25 25 H 1.07993 * 120.81025 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00224 * 245.00409 * 9 6 5 27 27 H 0.96999 * 119.99739 * 180.02562 * 13 12 10 28 28 H 1.08005 * 119.55081 * 180.24890 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2985 2.3836 0.0057 5 6 1.9724 3.5948 0.0003 6 16 1.0772 5.1124 0.0014 7 8 1.9499 6.0927 0.5460 8 8 -0.2030 4.8228 0.5461 9 7 0.8276 5.5355 -1.5801 10 6 0.0464 4.7490 -2.3841 11 1 -0.4105 3.8552 -1.9856 12 6 -0.1582 5.1006 -3.7113 13 7 0.3992 6.1896 -4.1970 14 14 -1.2243 4.0282 -4.8079 15 1 -1.7304 2.8708 -4.0272 16 1 -2.3720 4.8236 -5.3133 17 1 -0.4186 3.5378 -5.9550 18 6 3.3544 3.5986 -0.0001 19 7 4.0348 2.4688 -0.0001 20 6 3.4321 1.2953 -0.0002 21 17 4.3814 -0.1582 -0.0008 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2191 2.3513 0.0106 26 1 1.2380 6.3382 -1.9380 27 1 0.2559 6.4355 -5.1243 28 1 3.8845 4.5396 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767696560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:00 Heat of formation + Delta-G solvation = -78.690323 kcal Electronic energy + Delta-G solvation = -19219.923532 eV Core-core repulsion = 15810.750130 eV Total energy + Delta-G solvation = -3409.173402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 292.012 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53382 -38.15910 -36.55898 -36.21545 -34.87660 -34.84803 -32.17119 -31.21116 -30.56942 -27.51651 -24.77465 -23.77708 -23.07818 -19.11445 -18.44038 -18.00462 -17.23149 -17.04279 -16.59105 -15.96921 -15.75200 -14.83435 -14.55637 -14.33698 -14.01065 -13.71831 -13.56366 -12.73042 -12.18342 -11.79768 -11.72423 -11.52520 -11.48686 -11.33559 -11.29267 -11.14769 -11.05062 -10.81314 -10.68587 -10.43646 -10.22497 -9.76386 -9.51046 -8.53478 -8.38523 -6.74606 -4.12238 0.66962 1.23059 1.35154 1.85724 3.03282 3.04060 3.08609 3.11189 3.51909 3.86915 4.26979 4.49134 4.60655 4.77776 4.90253 4.95726 5.05949 5.14313 5.19148 5.45119 5.48393 5.74754 6.06115 6.32657 6.77469 7.03181 7.21885 7.69897 8.40829 8.51401 8.96374 10.39715 Molecular weight = 292.01amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.006616 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.956251 B = 4231.177957 C = 4966.742221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.302 6.302 3 C 0.071 3.929 4 C -0.056 4.056 5 C -0.667 4.667 6 S 2.589 3.411 7 O -0.996 6.996 8 O -0.967 6.967 9 N -0.933 5.933 10 C -0.264 4.264 11 H 0.106 0.894 12 C 0.033 3.967 13 N -0.859 5.859 14 Si 0.926 3.074 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.277 1.277 18 C 0.167 3.833 19 N -0.459 5.459 20 C 0.174 3.826 21 Cl -0.025 7.025 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.161 0.839 26 H 0.412 0.588 27 H 0.279 0.721 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -9.399 3.805 10.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.214 6.214 3 C 0.022 3.978 4 C -0.083 4.083 5 C -0.746 4.746 6 S 2.677 3.323 7 O -0.985 6.985 8 O -0.957 6.957 9 N -0.684 5.684 10 C -0.408 4.408 11 H 0.123 0.877 12 C -0.177 4.177 13 N -0.499 5.499 14 Si 0.751 3.249 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.203 1.203 18 C 0.009 3.991 19 N -0.171 5.171 20 C 0.009 3.991 21 Cl 0.003 6.997 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.123 0.877 25 H 0.178 0.822 26 H 0.248 0.752 27 H 0.090 0.910 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.620 -9.389 4.678 10.614 hybrid contribution -0.803 -0.841 -1.171 1.651 sum 0.816 -10.230 3.507 10.845 Atomic orbital electron populations 1.23239 0.77607 1.04482 1.02358 1.86128 1.21904 1.24848 1.88546 1.19547 0.91482 0.86247 1.00544 1.21435 1.01203 0.89862 0.95804 1.33342 1.08042 1.23902 1.09293 1.08281 0.74192 0.73785 0.76006 1.93417 1.66804 1.58949 1.79282 1.93462 1.38724 1.85200 1.78322 1.52141 1.53998 1.29797 1.32437 1.19474 1.19992 1.08312 0.92996 0.87663 1.25374 0.98377 0.96926 0.97046 1.69695 1.41384 1.22439 1.16418 0.85872 0.79420 0.79732 0.79849 1.18933 1.20062 1.20264 1.22289 0.89739 0.95467 0.91602 1.67128 1.40102 0.96959 1.12888 1.21007 0.85894 0.89548 1.02648 1.98384 1.73075 1.31815 1.96411 0.92050 0.91752 0.87662 0.82159 0.75157 0.91048 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.19 15 2 O -0.30 -4.37 9.97 -19.53 -0.19 -4.56 15 3 C 0.07 1.19 6.70 -39.05 -0.26 0.93 15 4 C -0.06 -0.97 8.61 -39.14 -0.34 -1.30 15 5 C -0.67 -12.52 5.90 -39.46 -0.23 -12.76 15 6 S 2.59 53.43 5.71 -107.50 -0.61 52.82 15 7 O -1.00 -21.91 17.30 -57.17 -0.99 -22.90 15 8 O -0.97 -21.71 17.06 -57.17 -0.98 -22.68 15 9 N -0.93 -20.70 5.75 31.50 0.18 -20.52 15 10 C -0.26 -6.09 9.63 -15.06 -0.15 -6.23 15 11 H 0.11 2.26 7.82 -52.49 -0.41 1.85 15 12 C 0.03 0.77 5.50 -17.43 -0.10 0.68 15 13 N -0.86 -21.04 13.06 55.49 0.72 -20.32 15 14 Si 0.93 18.04 29.55 -169.99 -5.02 13.02 15 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 17 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 18 C 0.17 3.04 10.68 -17.54 -0.19 2.85 15 19 N -0.46 -8.37 10.34 -10.25 -0.11 -8.47 15 20 C 0.17 3.03 7.29 -17.29 -0.13 2.90 15 21 Cl -0.03 -0.38 28.66 -51.86 -1.49 -1.87 15 22 H 0.06 0.61 7.69 -51.92 -0.40 0.21 15 23 H 0.06 0.69 7.71 -51.93 -0.40 0.29 15 24 H 0.11 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.16 2.52 6.09 -52.49 -0.32 2.20 15 26 H 0.41 9.28 8.02 -34.47 -0.28 9.00 15 27 H 0.28 6.40 8.31 -40.82 -0.34 6.06 15 28 H 0.18 2.91 7.62 -52.48 -0.40 2.51 15 LS Contribution 284.26 15.07 4.28 4.28 Total: -1.00 -28.58 284.26 -6.36 -34.93 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -1.76 Total: 8.01 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.39 Total: -11.74 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.80 Total: -49.31 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -2.16 Total: -50.15 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.61 Total: 52.82 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.49 Total: -1.87 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.58 -6.36 -34.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767696560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.756 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds