Wall clock time and date at job start Fri Apr 10 2020 14:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 110.54307 * 2 1 4 4 O 1.42100 * 110.54665 * 223.24996 * 2 1 3 5 5 N 1.65600 * 104.45200 * 111.62158 * 2 1 3 6 6 C 1.37354 * 119.99784 * 64.99919 * 5 2 1 7 7 N 1.31431 * 126.03485 * 0.02711 * 6 5 2 8 8 N 1.26113 * 117.49768 * 179.97438 * 7 6 5 9 9 C 1.31312 * 117.54351 * 0.02562 * 8 7 6 10 10 N 1.37230 * 126.02652 * 179.97438 * 9 8 7 11 11 C 1.34770 * 119.99987 * 0.02841 * 10 9 8 12 12 O 1.22015 * 120.00155 * 359.97438 * 11 10 9 13 13 C 1.40197 * 119.99898 * 180.02562 * 11 10 9 14 14 H 1.07996 * 119.99864 * 359.97438 * 13 11 10 15 15 C 1.40053 * 119.99858 * 179.97438 * 13 11 10 16 16 N 1.30688 * 119.99733 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99832 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47218 * 90.00416 * 17 15 13 19 19 H 1.48502 * 109.46684 * 210.00240 * 17 15 13 20 20 H 1.48500 * 109.47079 * 329.99901 * 17 15 13 21 21 S 1.76434 * 126.03943 * 179.97438 * 6 5 2 22 22 H 1.09000 * 109.46781 * 308.37726 * 1 2 3 23 23 H 1.08994 * 109.46850 * 68.37290 * 1 2 3 24 24 H 1.09001 * 109.46979 * 188.37660 * 1 2 3 25 25 H 0.96994 * 120.00694 * 245.00024 * 5 2 1 26 26 H 0.97004 * 119.99774 * 180.02562 * 10 9 8 27 27 H 0.97000 * 119.99786 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.9118 -1.8844 1.8284 7 7 1.2875 -2.7526 1.0643 8 7 1.0802 -3.9025 1.5387 9 6 1.5038 -4.1416 2.7584 10 7 1.3713 -5.3244 3.4415 11 6 0.7592 -6.3742 2.8588 12 8 0.3225 -6.2729 1.7240 13 6 0.6234 -7.5824 3.5569 14 1 1.0096 -7.6719 4.5615 15 6 -0.0132 -8.6732 2.9515 16 7 -0.4801 -8.5649 1.7357 17 14 -0.1936 -10.2832 3.8814 18 1 -1.4705 -10.2766 4.6395 19 1 -0.1955 -11.4135 2.9183 20 1 0.9419 -10.4394 4.8256 21 16 2.2743 -2.6743 3.3638 22 1 -0.3633 0.6380 0.8056 23 1 -0.3633 0.3787 -0.9553 24 1 -0.3633 -1.0167 0.1497 25 1 2.6921 -0.0236 2.1256 26 1 1.7183 -5.4048 4.3438 27 1 -0.9213 -9.3202 1.3166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325494037.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:14 Heat of formation + Delta-G solvation = -27.032481 kcal Electronic energy + Delta-G solvation = -18574.248133 eV Core-core repulsion = 15201.651240 eV Total energy + Delta-G solvation = -3372.596893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 292.013 amu Computer time = -0.97 seconds Orbital eigenvalues (eV) -40.33522 -38.09293 -37.22306 -36.12648 -35.70982 -33.87584 -32.56244 -29.58586 -28.94814 -27.08548 -25.01031 -22.27772 -20.56041 -19.77434 -18.69132 -18.13902 -17.40977 -16.71640 -16.44915 -15.73606 -15.60221 -15.33315 -15.13405 -14.05289 -13.53747 -13.33574 -13.21614 -12.98767 -12.75391 -12.54342 -12.25845 -12.04793 -11.93552 -11.52995 -11.24376 -11.06678 -10.85417 -10.46613 -10.25638 -10.08195 -9.55569 -9.16703 -8.98259 -7.89450 -7.47531 -6.54057 -5.12809 -0.04984 0.87402 1.06286 1.42573 2.38826 2.96264 3.04426 3.08391 3.16839 3.61446 3.78170 4.02400 4.12635 4.26954 4.35818 4.74673 4.92105 5.44022 5.53340 5.67479 5.94151 6.39370 7.04731 7.15162 7.57980 7.77568 8.59756 8.82236 9.29074 10.18611 10.37209 Molecular weight = 292.01amu Principal moments of inertia in cm(-1) A = 0.042272 B = 0.003781 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.213982 B = 7403.329541 C = 7858.639346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.609 3.391 3 O -0.956 6.956 4 O -0.921 6.921 5 N -0.996 5.996 6 C 0.195 3.805 7 N -0.264 5.264 8 N -0.254 5.254 9 C 0.303 3.697 10 N -0.623 5.623 11 C 0.524 3.476 12 O -0.515 6.515 13 C -0.526 4.526 14 H 0.075 0.925 15 C 0.084 3.916 16 N -0.734 5.734 17 Si 0.920 3.080 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.262 1.262 21 S 0.024 5.976 22 H 0.127 0.873 23 H 0.133 0.867 24 H 0.143 0.857 25 H 0.434 0.566 26 H 0.406 0.594 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 13.458 5.112 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.701 3.299 3 O -0.946 6.946 4 O -0.911 6.911 5 N -0.749 5.749 6 C -0.180 4.180 7 N -0.109 5.109 8 N -0.101 5.101 9 C -0.070 4.070 10 N -0.274 5.274 11 C 0.331 3.669 12 O -0.391 6.391 13 C -0.561 4.561 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.361 5.361 17 Si 0.743 3.257 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.185 1.185 21 S 0.256 5.744 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.162 0.838 25 H 0.271 0.729 26 H 0.242 0.758 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.696 13.385 3.062 13.993 hybrid contribution -0.197 -0.578 1.687 1.794 sum 2.498 12.807 4.749 13.886 Atomic orbital electron populations 1.30368 1.26334 1.13106 1.11424 1.05220 0.78401 0.73598 0.72730 1.93633 1.78717 1.37224 1.85040 1.93688 1.76871 1.60571 1.59955 1.52399 1.70131 1.14845 1.37483 1.25576 1.06873 0.91548 0.93959 1.71921 1.15584 0.96857 1.26489 1.72116 1.23952 1.07290 1.06785 1.27118 0.96097 0.91801 0.92004 1.44357 1.57792 1.07573 1.17629 1.17116 0.79931 0.82084 0.87740 1.90904 1.49625 1.80521 1.18099 1.19640 1.38847 0.95352 1.02270 0.90717 1.25788 0.93318 1.00345 0.94604 1.70031 1.23344 1.31196 1.11535 0.86156 0.79600 0.80130 0.79765 1.19350 1.20041 1.18547 1.85365 1.62420 1.10180 1.16451 0.85415 0.84884 0.83834 0.72910 0.75766 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.30 10.77 101.05 1.09 -5.21 15 2 S 2.61 31.67 5.83 -107.50 -0.63 31.05 15 3 O -0.96 -12.49 18.08 -57.54 -1.04 -13.53 15 4 O -0.92 -15.74 17.25 -57.54 -0.99 -16.73 15 5 N -1.00 -11.64 5.71 30.90 0.18 -11.46 15 6 C 0.20 3.10 8.12 -87.45 -0.71 2.39 15 7 N -0.26 -5.37 9.82 30.91 0.30 -5.07 15 8 N -0.25 -6.02 9.78 30.87 0.30 -5.72 15 9 C 0.30 6.21 8.36 -87.66 -0.73 5.48 15 10 N -0.62 -13.06 5.32 -14.77 -0.08 -13.13 15 11 C 0.52 13.90 7.47 -15.53 -0.12 13.78 15 12 O -0.51 -16.04 13.50 4.90 0.07 -15.98 15 13 C -0.53 -13.33 9.23 -38.17 -0.35 -13.68 15 14 H 0.07 1.65 7.85 -52.49 -0.41 1.24 15 15 C 0.08 2.14 5.49 -17.36 -0.10 2.05 15 16 N -0.73 -20.45 11.70 55.55 0.65 -19.80 15 17 Si 0.92 18.21 29.56 -169.99 -5.02 13.19 15 18 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 19 H -0.28 -5.40 7.11 56.52 0.40 -4.99 15 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 21 S 0.02 0.35 23.52 -107.50 -2.53 -2.18 15 22 H 0.13 0.88 8.14 -51.92 -0.42 0.45 15 23 H 0.13 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.14 1.70 7.36 -51.92 -0.38 1.32 15 25 H 0.43 3.46 8.91 -34.48 -0.31 3.15 15 26 H 0.41 6.68 8.77 -40.82 -0.36 6.32 15 27 H 0.28 6.95 8.29 -40.82 -0.34 6.61 15 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -38.13 278.26 -6.96 -45.09 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -1.44 Total: 5.29 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.92 Total: 4.80 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 1.35 Total: -55.18 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.97 Total: -46.24 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.19 kcal Atomic # 16 Polarization: 32.02 SS G_CDS: -3.15 Total: 28.87 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -38.13 -6.96 -45.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325494037.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.053 kcal (2) G-P(sol) polarization free energy of solvation -38.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.97 seconds