Wall clock time and date at job start Fri Apr 10 2020 14:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 110.54307 * 2 1 4 4 O 1.42100 * 110.54665 * 223.24996 * 2 1 3 5 5 N 1.65600 * 104.45200 * 111.62158 * 2 1 3 6 6 C 1.37354 * 119.99784 * 64.99919 * 5 2 1 7 7 N 1.31431 * 126.03485 * 0.02711 * 6 5 2 8 8 N 1.26113 * 117.49768 * 179.97438 * 7 6 5 9 9 C 1.31312 * 117.54351 * 0.02562 * 8 7 6 10 10 N 1.37230 * 126.02652 * 179.97438 * 9 8 7 11 11 C 1.34770 * 119.99987 * 0.02841 * 10 9 8 12 12 O 1.22015 * 120.00155 * 359.97438 * 11 10 9 13 13 C 1.40197 * 119.99898 * 180.02562 * 11 10 9 14 14 H 1.07996 * 119.99864 * 359.97438 * 13 11 10 15 15 C 1.40053 * 119.99858 * 179.97438 * 13 11 10 16 16 N 1.30688 * 119.99733 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99832 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47218 * 90.00416 * 17 15 13 19 19 H 1.48502 * 109.46684 * 210.00240 * 17 15 13 20 20 H 1.48500 * 109.47079 * 329.99901 * 17 15 13 21 21 S 1.76434 * 126.03943 * 179.97438 * 6 5 2 22 22 H 1.09000 * 109.46781 * 308.37726 * 1 2 3 23 23 H 1.08994 * 109.46850 * 68.37290 * 1 2 3 24 24 H 1.09001 * 109.46979 * 188.37660 * 1 2 3 25 25 H 0.96994 * 120.00694 * 245.00024 * 5 2 1 26 26 H 0.97004 * 119.99774 * 180.02562 * 10 9 8 27 27 H 0.97000 * 119.99786 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.9118 -1.8844 1.8284 7 7 1.2875 -2.7526 1.0643 8 7 1.0802 -3.9025 1.5387 9 6 1.5038 -4.1416 2.7584 10 7 1.3713 -5.3244 3.4415 11 6 0.7592 -6.3742 2.8588 12 8 0.3225 -6.2729 1.7240 13 6 0.6234 -7.5824 3.5569 14 1 1.0096 -7.6719 4.5615 15 6 -0.0132 -8.6732 2.9515 16 7 -0.4801 -8.5649 1.7357 17 14 -0.1936 -10.2832 3.8814 18 1 -1.4705 -10.2766 4.6395 19 1 -0.1955 -11.4135 2.9183 20 1 0.9419 -10.4394 4.8256 21 16 2.2743 -2.6743 3.3638 22 1 -0.3633 0.6380 0.8056 23 1 -0.3633 0.3787 -0.9553 24 1 -0.3633 -1.0167 0.1497 25 1 2.6921 -0.0236 2.1256 26 1 1.7183 -5.4048 4.3438 27 1 -0.9213 -9.3202 1.3166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325494037.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:10 Heat of formation + Delta-G solvation = -60.507861 kcal Electronic energy + Delta-G solvation = -18575.699734 eV Core-core repulsion = 15201.651240 eV Total energy + Delta-G solvation = -3374.048494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 292.013 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.84391 -39.86355 -38.32992 -37.27847 -36.98259 -35.59288 -34.51917 -30.63301 -30.33399 -28.86446 -26.49635 -23.87941 -21.98375 -21.20310 -19.93171 -19.63651 -18.78797 -18.20849 -17.52204 -17.47431 -16.97563 -16.77399 -16.38515 -15.71172 -15.07750 -14.69063 -14.39969 -14.17095 -14.02409 -13.70042 -13.47705 -13.29795 -13.25188 -13.19438 -12.77427 -12.74763 -12.11371 -12.00835 -11.67671 -11.62510 -11.00842 -10.94951 -10.31394 -9.87981 -9.07059 -8.41847 -7.10115 -1.09579 -0.45837 -0.32182 0.03596 1.31174 1.42108 1.43859 1.61314 1.67289 2.19524 2.41491 2.53171 2.63803 3.08693 3.19571 3.61078 3.90344 4.01440 4.10117 4.65081 4.90866 5.19033 5.48927 5.67546 5.77857 5.96503 6.67851 7.08350 7.82150 8.32620 8.51497 Molecular weight = 292.01amu Principal moments of inertia in cm(-1) A = 0.042272 B = 0.003781 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.213982 B = 7403.329541 C = 7858.639346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.616 3.384 3 O -0.962 6.962 4 O -0.976 6.976 5 N -0.980 5.980 6 C 0.208 3.792 7 N -0.306 5.306 8 N -0.309 5.309 9 C 0.256 3.744 10 N -0.622 5.622 11 C 0.513 3.487 12 O -0.576 6.576 13 C -0.547 4.547 14 H 0.105 0.895 15 C 0.029 3.971 16 N -0.794 5.794 17 Si 1.007 2.993 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.242 1.242 21 S 0.156 5.844 22 H 0.163 0.837 23 H 0.159 0.841 24 H 0.123 0.877 25 H 0.452 0.548 26 H 0.426 0.574 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 14.788 7.740 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.711 3.289 3 O -0.953 6.953 4 O -0.966 6.966 5 N -0.735 5.735 6 C -0.168 4.168 7 N -0.151 5.151 8 N -0.155 5.155 9 C -0.118 4.118 10 N -0.274 5.274 11 C 0.322 3.678 12 O -0.458 6.458 13 C -0.582 4.582 14 H 0.123 0.877 15 C -0.191 4.191 16 N -0.422 5.422 17 Si 0.826 3.174 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.165 1.165 21 S 0.389 5.611 22 H 0.181 0.819 23 H 0.177 0.823 24 H 0.142 0.858 25 H 0.294 0.706 26 H 0.266 0.734 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.361 14.816 5.747 16.243 hybrid contribution -0.297 -0.633 0.897 1.137 sum 3.064 14.183 6.644 15.959 Atomic orbital electron populations 1.30241 1.22315 1.12903 1.14523 1.04863 0.79580 0.72481 0.71931 1.93623 1.79790 1.36944 1.84928 1.93634 1.79015 1.62146 1.61781 1.52364 1.69875 1.13397 1.37825 1.26080 1.03783 0.92185 0.94727 1.71899 1.18572 0.96957 1.27693 1.72086 1.25147 1.09188 1.09114 1.27196 0.98151 0.93837 0.92573 1.43501 1.58201 1.07363 1.18320 1.17432 0.79594 0.83637 0.87171 1.90857 1.52095 1.82305 1.20536 1.20238 1.38934 0.95499 1.03550 0.87747 1.27120 0.92004 1.04752 0.95213 1.70215 1.25025 1.32830 1.14149 0.84864 0.80346 0.74045 0.78176 1.18353 1.20093 1.16492 1.84830 1.59181 1.04449 1.12686 0.81902 0.82274 0.85781 0.70628 0.73440 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -10.82 10.77 113.37 1.22 -9.60 15 2 S 2.62 59.87 5.83 -56.49 -0.33 59.54 15 3 O -0.96 -23.14 18.08 -127.65 -2.31 -25.45 15 4 O -0.98 -33.68 17.25 -127.65 -2.20 -35.89 15 5 N -0.98 -20.62 5.71 -56.16 -0.32 -20.94 15 6 C 0.21 6.26 8.12 179.24 1.46 7.72 15 7 N -0.31 -12.64 9.82 -56.11 -0.55 -13.19 15 8 N -0.31 -15.13 9.78 -56.25 -0.55 -15.68 15 9 C 0.26 10.52 8.36 179.31 1.50 12.02 15 10 N -0.62 -26.33 5.32 -318.74 -1.70 -28.03 15 11 C 0.51 28.22 7.47 84.72 0.63 28.85 15 12 O -0.58 -37.98 13.50 -5.36 -0.07 -38.05 15 13 C -0.55 -28.06 9.23 23.19 0.21 -27.85 15 14 H 0.10 4.50 7.85 -2.91 -0.02 4.48 15 15 C 0.03 1.47 5.49 85.30 0.47 1.94 15 16 N -0.79 -46.20 11.70 21.84 0.26 -45.94 15 17 Si 1.01 37.12 29.56 68.60 2.03 39.15 15 18 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 19 H -0.28 -10.06 7.11 99.48 0.71 -9.35 15 20 H -0.24 -8.07 7.11 99.48 0.71 -7.36 15 21 S 0.16 4.06 23.52 -56.49 -1.33 2.73 15 22 H 0.16 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.16 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.12 2.83 7.36 -2.39 -0.02 2.81 15 25 H 0.45 5.64 8.91 -96.75 -0.86 4.78 15 26 H 0.43 13.67 8.77 -92.71 -0.81 12.86 15 27 H 0.28 14.76 8.29 -92.71 -0.77 13.99 15 Total: -1.00 -89.38 278.26 -1.99 -91.37 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.40 Total: 17.28 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.49 Total: 13.08 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -2.86 Total: -123.78 kcal Atomic # 8 Polarization: -94.80 SS G_CDS: -4.58 Total: -99.38 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 63.94 SS G_CDS: -1.66 Total: 62.28 kcal Total: -89.38 -1.99 -91.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325494037.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.863 kcal (2) G-P(sol) polarization free energy of solvation -89.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds