Wall clock time and date at job start Fri Apr 10 2020 14:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00094 * 2 1 4 4 C 1.50696 * 109.47122 * 270.00815 * 3 2 1 5 5 H 1.07998 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99732 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00140 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00036 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47192 * 89.99965 * 8 6 4 10 10 H 1.48503 * 109.47231 * 210.00085 * 8 6 4 11 11 H 1.48507 * 109.47416 * 329.99920 * 8 6 4 12 12 C 1.34780 * 120.00220 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99879 * 180.02562 * 12 2 1 14 14 C 1.50691 * 119.99894 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47189 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47433 * 180.02562 * 15 14 12 17 17 C 1.46857 * 111.00201 * 58.81829 * 16 15 14 18 18 C 1.53531 * 109.90668 * 162.49621 * 17 16 15 19 19 C 1.51017 * 107.65041 * 49.90202 * 18 17 16 20 20 N 1.29843 * 129.17260 * 163.75547 * 19 18 17 21 21 N 1.40392 * 108.08719 * 180.10394 * 20 19 18 22 22 H 0.96999 * 126.00170 * 180.02562 * 21 20 19 23 23 C 1.35274 * 108.00658 * 0.22629 * 21 20 19 24 24 C 1.34366 * 107.60732 * 359.80669 * 23 21 20 25 25 C 1.47329 * 110.99527 * 293.94882 * 16 15 14 26 26 H 1.09004 * 109.46826 * 269.99329 * 1 2 3 27 27 H 1.08994 * 109.47262 * 29.99615 * 1 2 3 28 28 H 1.09002 * 109.46969 * 149.99687 * 1 2 3 29 29 H 1.09003 * 109.46533 * 30.00340 * 3 2 1 30 30 H 1.08997 * 109.47093 * 149.99826 * 3 2 1 31 31 H 0.96995 * 119.99952 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47576 * 60.00559 * 14 12 2 33 33 H 1.09001 * 109.47541 * 299.99810 * 14 12 2 34 34 H 1.08999 * 109.47497 * 59.99449 * 15 14 12 35 35 H 1.09011 * 109.46823 * 299.99809 * 15 14 12 36 36 H 1.08997 * 109.39595 * 282.62831 * 17 16 15 37 37 H 1.09003 * 109.39677 * 42.45218 * 17 16 15 38 38 H 1.09003 * 109.81848 * 290.37206 * 18 17 16 39 39 H 1.08999 * 109.82457 * 169.44123 * 18 17 16 40 40 H 1.07997 * 126.19992 * 179.80880 * 23 21 20 41 41 H 1.08999 * 109.74854 * 56.82084 * 25 16 15 42 42 H 1.08997 * 109.74994 * 296.08607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1258 2.8782 -1.6727 7 7 3.5524 3.6187 -0.6730 8 14 3.4376 3.4172 -3.4337 9 1 2.3074 4.2595 -3.9011 10 1 4.6976 4.2007 -3.4959 11 1 3.5558 2.2200 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1671 -0.0001 14 6 1.3855 -2.4722 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6453 -4.9074 -0.0011 17 6 0.7678 -5.0080 -1.1744 18 6 0.3558 -6.4704 -1.3952 19 6 -0.1476 -7.0083 -0.0769 20 7 -0.8514 -8.0736 0.1593 21 7 -1.0740 -8.1509 1.5433 22 1 -1.5710 -8.8457 2.0029 23 6 -0.4776 -7.0842 2.1231 24 6 0.1023 -6.3634 1.1486 25 6 0.8974 -5.0858 1.2556 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 4.0292 4.4446 -0.8502 32 1 0.7585 -2.5299 -0.8903 33 1 0.7592 -2.5303 0.8897 34 1 3.0065 -3.5774 0.8894 35 1 3.0064 -3.5774 -0.8906 36 1 -0.1232 -4.4013 -1.0131 37 1 1.2981 -4.6457 -2.0552 38 1 1.2167 -7.0510 -1.7267 39 1 -0.4362 -6.5226 -2.1423 40 1 -0.4690 -6.8535 3.1781 41 1 0.2223 -4.2433 1.4052 42 1 1.5933 -5.1540 2.0918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091077931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:03 Heat of formation + Delta-G solvation = 47.459885 kcal Electronic energy + Delta-G solvation = -23197.037610 eV Core-core repulsion = 19792.806505 eV Total energy + Delta-G solvation = -3404.231105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63342 -39.27372 -37.83231 -34.82131 -33.44341 -32.60995 -31.72014 -30.41368 -29.20113 -27.60573 -25.93588 -25.35382 -24.08925 -22.70444 -21.34888 -20.99057 -19.00247 -18.31028 -17.86298 -16.59055 -16.49283 -15.73782 -15.43172 -15.14301 -15.08050 -14.83986 -14.38748 -13.96217 -13.77523 -13.55363 -13.12003 -12.74822 -12.57017 -12.26385 -12.23905 -12.14090 -11.94046 -11.81228 -11.58363 -11.22114 -11.17797 -10.90830 -10.74900 -10.57847 -10.55074 -10.15383 -9.62562 -9.61170 -8.95742 -8.71013 -8.43556 -8.24042 -7.63663 -6.04119 -4.08923 1.69009 2.54577 2.62656 3.30183 3.36743 3.39750 3.46075 3.74281 4.04786 4.31413 4.45338 4.55719 4.83959 5.04953 5.12131 5.16751 5.20244 5.28157 5.31274 5.34092 5.35208 5.48010 5.57357 5.67013 5.69803 5.77961 5.84324 5.88868 5.91397 6.02674 6.19717 6.33603 6.40560 6.99037 7.00373 7.07420 7.08231 7.44800 7.48246 7.54576 7.92298 8.23821 8.42833 8.90568 9.10689 9.56271 11.03996 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.002944 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.738714 B = 9508.212828 C = 9773.798834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.507 3.493 13 O -0.542 6.542 14 C -0.178 4.178 15 C 0.074 3.926 16 N -0.535 5.535 17 C 0.054 3.946 18 C -0.034 4.034 19 C 0.094 3.906 20 N -0.292 5.292 21 N -0.490 5.490 22 H 0.438 0.562 23 C 0.064 3.936 24 C -0.234 4.234 25 C 0.130 3.870 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.176 0.824 41 H 0.047 0.953 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.301 -20.212 5.023 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.293 3.707 13 O -0.420 6.420 14 C -0.220 4.220 15 C -0.054 4.054 16 N -0.258 5.258 17 C -0.074 4.074 18 C -0.074 4.074 19 C -0.076 4.076 20 N -0.114 5.114 21 N -0.198 5.198 22 H 0.281 0.719 23 C -0.082 4.082 24 C -0.246 4.246 25 C 0.001 3.999 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.194 0.806 41 H 0.065 0.935 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.785 -21.404 4.542 24.394 hybrid contribution -0.528 1.419 -0.116 1.518 sum -11.313 -19.986 4.426 23.388 Atomic orbital electron populations 1.21608 0.81606 1.02452 1.00259 1.48189 1.06085 1.07997 1.71373 1.19283 0.92552 0.78162 0.97483 1.21429 1.36505 1.06219 0.92300 0.92510 1.24946 0.95359 0.96408 0.97453 1.69933 1.38442 1.14317 1.30744 0.86494 0.77674 0.78597 0.84639 1.20677 1.21064 1.19855 1.20216 0.88061 0.84970 0.77480 1.90674 1.13858 1.87272 1.50162 1.22397 1.00786 0.95372 1.03460 1.22006 0.94885 0.83668 1.04837 1.62125 1.28257 1.33700 1.01710 1.22138 0.95948 0.95121 0.94230 1.20260 1.00767 0.95544 0.90820 1.22322 0.95789 0.92484 0.96991 1.76905 1.21532 1.20967 0.92005 1.46346 1.45920 1.22332 1.05247 0.71852 1.21903 0.97516 0.89545 0.99240 1.20111 1.09629 1.02434 0.92453 1.20486 0.94486 0.92095 0.92794 0.93895 0.90834 0.92624 0.95128 0.93821 0.92714 0.89476 0.89732 0.89645 0.89366 0.93962 0.89495 0.89020 0.89668 0.80649 0.93496 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.33 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.69 2.86 -182.96 -0.52 -13.21 16 3 C 0.24 6.41 5.16 -5.19 -0.03 6.38 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.51 10.22 7.67 -10.99 -0.08 10.14 16 13 O -0.54 -13.31 15.56 5.55 0.09 -13.22 16 14 C -0.18 -2.48 3.63 -27.89 -0.10 -2.58 16 15 C 0.07 0.99 4.56 -3.82 -0.02 0.97 16 16 N -0.54 -6.14 4.78 -235.29 -1.12 -7.26 16 17 C 0.05 0.55 4.50 -3.57 -0.02 0.53 16 18 C -0.03 -0.33 6.54 -27.45 -0.18 -0.51 16 19 C 0.09 1.07 7.20 -82.34 -0.59 0.48 16 20 N -0.29 -3.44 12.67 33.77 0.43 -3.01 16 21 N -0.49 -4.17 7.38 30.33 0.22 -3.94 16 22 H 0.44 2.21 8.96 -182.38 -1.63 0.57 16 23 C 0.06 0.52 11.96 -17.40 -0.21 0.31 16 24 C -0.23 -2.45 5.97 -104.97 -0.63 -3.08 16 25 C 0.13 1.33 5.62 -4.66 -0.03 1.31 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.09 1.10 6.05 -51.93 -0.31 0.79 16 33 H 0.08 1.02 6.46 -51.93 -0.34 0.69 16 34 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.09 1.30 8.06 -51.92 -0.42 0.88 16 36 H 0.04 0.42 7.23 -51.93 -0.38 0.05 16 37 H 0.09 0.84 7.94 -51.93 -0.41 0.43 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.05 0.47 6.36 -51.93 -0.33 0.14 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -35.42 341.17 -9.20 -44.62 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.46 Total: -2.26 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.69 Total: 2.26 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.26 Total: -53.38 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.42 -9.20 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091077931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.077 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds