Wall clock time and date at job start Fri Apr 10 2020 14:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00094 * 2 1 4 4 C 1.50696 * 109.47122 * 270.00815 * 3 2 1 5 5 H 1.07998 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99732 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00140 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00036 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47192 * 89.99965 * 8 6 4 10 10 H 1.48503 * 109.47231 * 210.00085 * 8 6 4 11 11 H 1.48507 * 109.47416 * 329.99920 * 8 6 4 12 12 C 1.34780 * 120.00220 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99879 * 180.02562 * 12 2 1 14 14 C 1.50691 * 119.99894 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47189 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47433 * 180.02562 * 15 14 12 17 17 C 1.46857 * 111.00201 * 58.81829 * 16 15 14 18 18 C 1.53531 * 109.90668 * 162.49621 * 17 16 15 19 19 C 1.51017 * 107.65041 * 49.90202 * 18 17 16 20 20 N 1.29843 * 129.17260 * 163.75547 * 19 18 17 21 21 N 1.40392 * 108.08719 * 180.10394 * 20 19 18 22 22 H 0.96999 * 126.00170 * 180.02562 * 21 20 19 23 23 C 1.35274 * 108.00658 * 0.22629 * 21 20 19 24 24 C 1.34366 * 107.60732 * 359.80669 * 23 21 20 25 25 C 1.47329 * 110.99527 * 293.94882 * 16 15 14 26 26 H 1.09004 * 109.46826 * 269.99329 * 1 2 3 27 27 H 1.08994 * 109.47262 * 29.99615 * 1 2 3 28 28 H 1.09002 * 109.46969 * 149.99687 * 1 2 3 29 29 H 1.09003 * 109.46533 * 30.00340 * 3 2 1 30 30 H 1.08997 * 109.47093 * 149.99826 * 3 2 1 31 31 H 0.96995 * 119.99952 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47576 * 60.00559 * 14 12 2 33 33 H 1.09001 * 109.47541 * 299.99810 * 14 12 2 34 34 H 1.08999 * 109.47497 * 59.99449 * 15 14 12 35 35 H 1.09011 * 109.46823 * 299.99809 * 15 14 12 36 36 H 1.08997 * 109.39595 * 282.62831 * 17 16 15 37 37 H 1.09003 * 109.39677 * 42.45218 * 17 16 15 38 38 H 1.09003 * 109.81848 * 290.37206 * 18 17 16 39 39 H 1.08999 * 109.82457 * 169.44123 * 18 17 16 40 40 H 1.07997 * 126.19992 * 179.80880 * 23 21 20 41 41 H 1.08999 * 109.74854 * 56.82084 * 25 16 15 42 42 H 1.08997 * 109.74994 * 296.08607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1258 2.8782 -1.6727 7 7 3.5524 3.6187 -0.6730 8 14 3.4376 3.4172 -3.4337 9 1 2.3074 4.2595 -3.9011 10 1 4.6976 4.2007 -3.4959 11 1 3.5558 2.2200 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1671 -0.0001 14 6 1.3855 -2.4722 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6453 -4.9074 -0.0011 17 6 0.7678 -5.0080 -1.1744 18 6 0.3558 -6.4704 -1.3952 19 6 -0.1476 -7.0083 -0.0769 20 7 -0.8514 -8.0736 0.1593 21 7 -1.0740 -8.1509 1.5433 22 1 -1.5710 -8.8457 2.0029 23 6 -0.4776 -7.0842 2.1231 24 6 0.1023 -6.3634 1.1486 25 6 0.8974 -5.0858 1.2556 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 4.0292 4.4446 -0.8502 32 1 0.7585 -2.5299 -0.8903 33 1 0.7592 -2.5303 0.8897 34 1 3.0065 -3.5774 0.8894 35 1 3.0064 -3.5774 -0.8906 36 1 -0.1232 -4.4013 -1.0131 37 1 1.2981 -4.6457 -2.0552 38 1 1.2167 -7.0510 -1.7267 39 1 -0.4362 -6.5226 -2.1423 40 1 -0.4690 -6.8535 3.1781 41 1 0.2223 -4.2433 1.4052 42 1 1.5933 -5.1540 2.0918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091077931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:03 Heat of formation + Delta-G solvation = 21.116244 kcal Electronic energy + Delta-G solvation = -23198.179956 eV Core-core repulsion = 19792.806505 eV Total energy + Delta-G solvation = -3405.373451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.34430 -40.74897 -38.86751 -36.56757 -34.75650 -34.24698 -32.58765 -31.30931 -30.37784 -29.21371 -27.30491 -26.45257 -25.25046 -24.27936 -22.26925 -21.81030 -20.16274 -19.40327 -18.69382 -18.60826 -17.93888 -17.09725 -16.72469 -16.39832 -16.05523 -15.99668 -15.83462 -15.01207 -14.83394 -14.54144 -14.15064 -14.14446 -13.79944 -13.61234 -13.46555 -13.40274 -13.17325 -13.05967 -12.93178 -12.76117 -12.52622 -12.45835 -12.19433 -12.00973 -11.81317 -11.68068 -11.34699 -10.63478 -10.58841 -10.33710 -9.50395 -9.39374 -9.06852 -8.21610 -6.36614 1.02028 1.37318 1.40464 1.50802 1.80075 1.87837 2.04519 2.33527 2.47797 2.94404 3.07867 3.59801 3.85845 3.88966 4.01931 4.10746 4.23225 4.32769 4.38334 4.50044 4.52855 4.61506 4.72043 4.73545 4.77305 4.92957 4.94639 4.96682 4.99813 5.04525 5.10338 5.13683 5.24918 5.27358 5.57456 5.67271 5.85758 6.07302 6.13091 6.17966 6.53180 6.71042 6.77811 6.82350 7.29630 7.52189 8.85406 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.002944 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.738714 B = 9508.212828 C = 9773.798834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.497 3.503 13 O -0.597 6.597 14 C -0.157 4.157 15 C 0.084 3.916 16 N -0.540 5.540 17 C 0.054 3.946 18 C -0.032 4.032 19 C 0.077 3.923 20 N -0.328 5.328 21 N -0.482 5.482 22 H 0.451 0.549 23 C 0.081 3.919 24 C -0.263 4.263 25 C 0.132 3.868 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.022 0.978 30 H -0.002 1.002 31 H 0.267 0.733 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.215 0.785 41 H 0.055 0.945 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -21.313 4.831 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.196 1.196 12 C 0.286 3.714 13 O -0.479 6.479 14 C -0.198 4.198 15 C -0.044 4.044 16 N -0.262 5.262 17 C -0.074 4.074 18 C -0.072 4.072 19 C -0.092 4.092 20 N -0.150 5.150 21 N -0.192 5.192 22 H 0.298 0.702 23 C -0.065 4.065 24 C -0.275 4.275 25 C 0.004 3.996 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.040 0.960 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.232 0.768 41 H 0.073 0.927 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.874 -22.545 4.355 26.324 hybrid contribution 0.068 1.690 0.041 1.692 sum -12.807 -20.854 4.396 24.864 Atomic orbital electron populations 1.21900 0.78018 1.03844 1.02471 1.48234 1.08341 1.06531 1.71336 1.18744 0.91106 0.80560 0.95975 1.21710 1.36792 1.06488 0.93074 0.92843 1.25880 0.94920 0.96462 1.02016 1.70053 1.39018 1.14797 1.33073 0.85405 0.78047 0.78242 0.79061 1.18833 1.20677 1.19644 1.21313 0.87808 0.86495 0.75783 1.90644 1.16604 1.88181 1.52422 1.22328 1.00503 0.91249 1.05710 1.21782 0.94757 0.84497 1.03385 1.62101 1.29226 1.31993 1.02919 1.22182 0.95887 0.95603 0.93745 1.20263 1.00993 0.95076 0.90831 1.22592 0.95959 0.92716 0.97907 1.76834 1.22658 1.21666 0.93871 1.46411 1.45552 1.22801 1.04443 0.70204 1.22483 0.95297 0.88176 1.00585 1.20274 1.11184 1.03194 0.92808 1.20502 0.94520 0.92507 0.92099 0.91199 0.91751 0.88949 0.96036 0.98416 0.92406 0.87329 0.86848 0.90878 0.91264 0.93214 0.89321 0.89339 0.88488 0.76835 0.92694 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.61 16 2 N -0.61 -25.63 2.86 -851.13 -2.43 -28.07 16 3 C 0.26 13.98 5.16 85.63 0.44 14.42 16 4 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.50 20.01 7.67 87.65 0.67 20.69 16 13 O -0.60 -30.42 15.56 -3.05 -0.05 -30.46 16 14 C -0.16 -4.02 3.63 29.85 0.11 -3.91 16 15 C 0.08 2.19 4.56 86.30 0.39 2.58 16 16 N -0.54 -11.51 4.78 -898.32 -4.30 -15.80 16 17 C 0.05 0.99 4.50 86.49 0.39 1.38 16 18 C -0.03 -0.58 6.54 30.13 0.20 -0.39 16 19 C 0.08 1.64 7.20 43.56 0.31 1.95 16 20 N -0.33 -7.22 12.67 -47.07 -0.60 -7.81 16 21 N -0.48 -7.05 7.38 -57.96 -0.43 -7.47 16 22 H 0.45 3.47 8.96 -213.13 -1.91 1.56 16 23 C 0.08 1.06 11.96 83.28 1.00 2.06 16 24 C -0.26 -4.87 5.97 -20.09 -0.12 -4.99 16 25 C 0.13 2.39 5.62 85.53 0.48 2.87 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 28 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 29 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 30 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.11 2.38 6.05 -2.39 -0.01 2.37 16 33 H 0.11 2.32 6.46 -2.39 -0.02 2.30 16 34 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 35 H 0.07 2.05 8.06 -2.38 -0.02 2.03 16 36 H 0.05 0.84 7.23 -2.39 -0.02 0.83 16 37 H 0.09 1.58 7.94 -2.39 -0.02 1.57 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.06 0.89 6.36 -2.39 -0.02 0.88 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -79.95 341.17 -0.48 -80.43 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -0.88 Total: 8.50 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.88 Total: 9.96 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -7.47 Total: -115.44 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.95 -0.48 -80.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091077931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.549 kcal (2) G-P(sol) polarization free energy of solvation -79.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds