Wall clock time and date at job start Fri Apr 10 2020 14:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48507 * 109.46754 * 210.00056 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.38626 * 120.00099 * 179.97438 * 2 1 3 13 13 C 1.39168 * 120.48995 * 185.00173 * 12 2 1 14 14 C 1.39124 * 118.27188 * 180.02562 * 13 12 2 15 15 N 1.38630 * 120.48551 * 179.97438 * 14 13 12 16 16 C 1.47895 * 111.00320 * 59.87641 * 15 14 13 17 17 C 1.53997 * 107.06172 * 214.15823 * 16 15 14 18 18 C 1.54595 * 105.13638 * 1.22368 * 17 16 15 19 19 C 1.48537 * 110.99951 * 302.47750 * 15 14 13 20 20 H 1.09001 * 110.66663 * 41.28845 * 19 15 14 21 21 C 1.52995 * 110.67009 * 278.15576 * 19 15 14 22 22 O 1.42903 * 109.47155 * 295.00212 * 21 19 15 23 23 N 1.33200 * 119.03111 * 0.02562 * 14 13 12 24 24 C 1.31728 * 120.87749 * 359.97438 * 23 14 13 25 25 N 1.31753 * 121.91210 * 359.71702 * 24 23 14 26 26 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 27 27 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 28 28 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 29 29 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 30 30 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.08004 * 120.86289 * 0.02748 * 13 12 2 33 33 H 1.09007 * 109.91761 * 333.50582 * 16 15 14 34 34 H 1.09001 * 109.92287 * 94.79719 * 16 15 14 35 35 H 1.09001 * 110.30947 * 120.14035 * 17 16 15 36 36 H 1.09002 * 110.30724 * 242.20458 * 17 16 15 37 37 H 1.09000 * 110.72214 * 140.32063 * 18 17 16 38 38 H 1.09006 * 110.72063 * 263.41653 * 18 17 16 39 39 H 1.09000 * 109.47086 * 55.00131 * 21 19 15 40 40 H 1.08999 * 109.47228 * 175.00157 * 21 19 15 41 41 H 0.96697 * 114.00348 * 180.02562 * 22 21 19 42 42 H 1.07996 * 119.03738 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.7337 2.8588 3.9003 10 1 3.4871 4.8993 3.4966 11 1 2.3435 2.9195 4.3050 12 6 2.1581 -1.2005 0.0005 13 6 3.5458 -1.2146 0.1051 14 6 4.1945 -2.4454 0.1004 15 7 5.5754 -2.5129 0.2016 16 6 6.0452 -1.8991 1.4625 17 6 7.4036 -1.2378 1.1644 18 6 7.6530 -1.4884 -0.3406 19 6 6.2273 -1.7450 -0.8901 20 1 5.7062 -0.8033 -1.0623 21 6 6.2848 -2.5748 -2.1742 22 8 7.1301 -3.7089 -1.9711 23 7 3.4694 -3.5579 -0.0038 24 6 2.1569 -3.5027 -0.1008 25 7 1.5055 -2.3575 -0.0940 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6084 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5137 31 1 4.0310 4.4434 0.8504 32 1 4.1045 -0.2941 0.1878 33 1 5.3315 -1.1464 1.7975 34 1 6.1656 -2.6667 2.2270 35 1 7.3561 -0.1678 1.3670 36 1 8.1890 -1.7008 1.7619 37 1 8.0950 -0.6095 -0.8099 38 1 8.2885 -2.3620 -0.4859 39 1 5.2813 -2.9115 -2.4344 40 1 6.6845 -1.9641 -2.9838 41 1 7.2135 -4.2812 -2.7461 42 1 1.5982 -4.4233 -0.1835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590078371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:01 Heat of formation + Delta-G solvation = 24.630570 kcal Electronic energy + Delta-G solvation = -24380.279535 eV Core-core repulsion = 20975.058476 eV Total energy + Delta-G solvation = -3405.221059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71810 -38.85968 -36.47242 -36.11393 -33.28727 -32.66705 -31.09551 -30.08769 -29.42126 -27.97025 -25.46120 -24.97448 -23.94116 -22.98482 -21.25494 -20.57871 -19.79444 -17.70974 -17.01782 -16.93765 -16.65173 -15.47249 -15.30505 -14.88958 -14.62083 -14.50815 -14.31454 -13.98364 -13.66759 -13.37902 -13.18871 -12.96684 -12.51716 -12.27614 -12.09412 -11.86610 -11.60405 -11.43010 -11.16818 -11.07209 -10.84488 -10.62884 -10.44884 -10.43771 -10.32391 -10.00819 -9.85171 -9.65730 -9.05301 -8.89552 -8.66224 -8.11762 -7.13028 -6.25230 -4.35221 1.54282 2.01375 3.16212 3.23780 3.27245 3.66675 3.74301 4.25316 4.31797 4.43711 4.70724 4.84601 4.94353 5.05558 5.09145 5.29900 5.37669 5.44793 5.47123 5.52518 5.63323 5.83894 5.91259 5.99645 6.01226 6.02647 6.05774 6.09714 6.16101 6.24989 6.32771 6.39638 6.59015 6.84574 6.92645 7.03499 7.39599 7.48187 7.68300 7.76582 7.94488 8.10995 8.17243 8.71339 8.92133 9.32719 10.79125 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.006355 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.307960 B = 4405.099134 C = 5758.444741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.579 5.579 3 C 0.250 3.750 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.449 3.551 13 C -0.305 4.305 14 C 0.358 3.642 15 N -0.462 5.462 16 C 0.044 3.956 17 C -0.129 4.129 18 C -0.111 4.111 19 C 0.070 3.930 20 H 0.077 0.923 21 C 0.096 3.904 22 O -0.554 6.554 23 N -0.559 5.559 24 C 0.333 3.667 25 N -0.596 5.596 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.266 0.734 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.370 0.630 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -9.183 -4.394 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.287 5.287 3 C 0.130 3.870 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.205 3.795 13 C -0.337 4.337 14 C 0.125 3.875 15 N -0.185 5.185 16 C -0.083 4.083 17 C -0.168 4.168 18 C -0.149 4.149 19 C -0.037 4.037 20 H 0.094 0.906 21 C 0.018 3.982 22 O -0.358 6.358 23 N -0.281 5.281 24 C 0.041 3.959 25 N -0.322 5.322 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.216 0.784 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.096 -9.848 -3.919 11.363 hybrid contribution 0.116 1.854 0.547 1.937 sum 4.212 -7.994 -3.372 9.644 Atomic orbital electron populations 1.21466 0.80007 1.02373 1.00292 1.47085 1.05726 1.03558 1.72328 1.19431 0.92018 0.77913 0.97602 1.21487 1.37019 1.06935 0.92185 0.92142 1.24935 0.95169 0.96035 0.97592 1.69917 1.37832 1.14337 1.30860 0.86510 0.78894 0.77837 0.84377 1.20365 1.20935 1.19773 1.18470 0.88178 0.86401 0.86490 1.22716 0.95397 1.00891 1.14662 1.19672 0.90030 0.87565 0.90255 1.61464 1.01955 1.52266 1.02824 1.22950 0.96402 0.97881 0.91084 1.22395 0.96637 1.00943 0.96780 1.22394 0.95568 1.02198 0.94747 1.22996 0.95603 0.94323 0.90766 0.90553 1.21902 0.93578 0.87452 0.95317 1.86563 1.69521 1.38612 1.41058 1.68000 1.07692 1.31519 1.20870 1.24369 0.86913 0.94755 0.89814 1.67932 1.41558 0.98057 1.24679 0.94161 0.91529 0.91371 0.94213 0.94732 0.92416 0.83420 0.92123 0.90087 0.90932 0.90870 0.91027 0.89324 0.93851 0.93353 0.78414 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.44 59.84 0.62 2.47 16 2 N -0.58 -12.32 2.96 -183.00 -0.54 -12.86 16 3 C 0.25 5.98 4.81 -5.19 -0.02 5.95 16 4 C -0.54 -13.98 9.37 -34.44 -0.32 -14.30 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.45 9.38 7.38 -154.71 -1.14 8.24 16 13 C -0.31 -6.23 7.06 -38.91 -0.27 -6.50 16 14 C 0.36 6.82 5.55 -154.70 -0.86 5.96 16 15 N -0.46 -7.98 5.03 -161.73 -0.81 -8.79 16 16 C 0.04 0.70 6.52 -2.76 -0.02 0.69 16 17 C -0.13 -1.75 6.93 -25.37 -0.18 -1.93 16 18 C -0.11 -1.47 6.43 -24.87 -0.16 -1.63 16 19 C 0.07 1.07 2.62 -65.79 -0.17 0.90 16 20 H 0.08 1.25 6.68 -51.93 -0.35 0.90 16 21 C 0.10 1.29 6.95 37.15 0.26 1.55 16 22 O -0.55 -7.16 12.36 -35.23 -0.44 -7.60 16 23 N -0.56 -10.55 10.47 -13.89 -0.15 -10.70 16 24 C 0.33 5.77 12.28 -92.25 -1.13 4.64 16 25 N -0.60 -11.45 9.31 -13.88 -0.13 -11.58 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.16 7.48 -51.93 -0.39 0.77 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.03 0.87 6.44 -51.93 -0.33 0.53 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.15 3.23 5.48 -52.48 -0.29 2.94 16 33 H 0.06 1.09 6.71 -51.93 -0.35 0.74 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 39 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.37 3.06 9.12 45.56 0.42 3.47 16 42 H 0.19 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.22 342.07 -10.10 -40.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.41 Total: 6.44 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -3.50 Total: 7.66 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.89 Total: -67.41 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.44 Total: -7.60 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.22 -10.10 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590078371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.950 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds