Wall clock time and date at job start Fri Apr 10 2020 14:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48507 * 109.46754 * 210.00056 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.38626 * 120.00099 * 179.97438 * 2 1 3 13 13 C 1.39168 * 120.48995 * 185.00173 * 12 2 1 14 14 C 1.39124 * 118.27188 * 180.02562 * 13 12 2 15 15 N 1.38630 * 120.48551 * 179.97438 * 14 13 12 16 16 C 1.47895 * 111.00320 * 59.87641 * 15 14 13 17 17 C 1.53997 * 107.06172 * 214.15823 * 16 15 14 18 18 C 1.54595 * 105.13638 * 1.22368 * 17 16 15 19 19 C 1.48537 * 110.99951 * 302.47750 * 15 14 13 20 20 H 1.09001 * 110.66663 * 41.28845 * 19 15 14 21 21 C 1.52995 * 110.67009 * 278.15576 * 19 15 14 22 22 O 1.42903 * 109.47155 * 295.00212 * 21 19 15 23 23 N 1.33200 * 119.03111 * 0.02562 * 14 13 12 24 24 C 1.31728 * 120.87749 * 359.97438 * 23 14 13 25 25 N 1.31753 * 121.91210 * 359.71702 * 24 23 14 26 26 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 27 27 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 28 28 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 29 29 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 30 30 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.08004 * 120.86289 * 0.02748 * 13 12 2 33 33 H 1.09007 * 109.91761 * 333.50582 * 16 15 14 34 34 H 1.09001 * 109.92287 * 94.79719 * 16 15 14 35 35 H 1.09001 * 110.30947 * 120.14035 * 17 16 15 36 36 H 1.09002 * 110.30724 * 242.20458 * 17 16 15 37 37 H 1.09000 * 110.72214 * 140.32063 * 18 17 16 38 38 H 1.09006 * 110.72063 * 263.41653 * 18 17 16 39 39 H 1.09000 * 109.47086 * 55.00131 * 21 19 15 40 40 H 1.08999 * 109.47228 * 175.00157 * 21 19 15 41 41 H 0.96697 * 114.00348 * 180.02562 * 22 21 19 42 42 H 1.07996 * 119.03738 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.7337 2.8588 3.9003 10 1 3.4871 4.8993 3.4966 11 1 2.3435 2.9195 4.3050 12 6 2.1581 -1.2005 0.0005 13 6 3.5458 -1.2146 0.1051 14 6 4.1945 -2.4454 0.1004 15 7 5.5754 -2.5129 0.2016 16 6 6.0452 -1.8991 1.4625 17 6 7.4036 -1.2378 1.1644 18 6 7.6530 -1.4884 -0.3406 19 6 6.2273 -1.7450 -0.8901 20 1 5.7062 -0.8033 -1.0623 21 6 6.2848 -2.5748 -2.1742 22 8 7.1301 -3.7089 -1.9711 23 7 3.4694 -3.5579 -0.0038 24 6 2.1569 -3.5027 -0.1008 25 7 1.5055 -2.3575 -0.0940 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6084 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5137 31 1 4.0310 4.4434 0.8504 32 1 4.1045 -0.2941 0.1878 33 1 5.3315 -1.1464 1.7975 34 1 6.1656 -2.6667 2.2270 35 1 7.3561 -0.1678 1.3670 36 1 8.1890 -1.7008 1.7619 37 1 8.0950 -0.6095 -0.8099 38 1 8.2885 -2.3620 -0.4859 39 1 5.2813 -2.9115 -2.4344 40 1 6.6845 -1.9641 -2.9838 41 1 7.2135 -4.2812 -2.7461 42 1 1.5982 -4.4233 -0.1835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590078371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:00 Heat of formation + Delta-G solvation = 5.106741 kcal Electronic energy + Delta-G solvation = -24381.126152 eV Core-core repulsion = 20975.058476 eV Total energy + Delta-G solvation = -3406.067676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17032 -40.16874 -38.06256 -37.20946 -35.02691 -34.27941 -32.60829 -31.24266 -30.84734 -29.79893 -27.04021 -26.16647 -25.59744 -24.57139 -22.72089 -21.81431 -21.14036 -19.02262 -18.69965 -18.52890 -18.11913 -16.94650 -16.71789 -16.42954 -16.08230 -15.99381 -15.70779 -15.42500 -15.08352 -14.88600 -14.62191 -14.17588 -14.04131 -13.74290 -13.41440 -13.27457 -13.16590 -13.01427 -12.81036 -12.65507 -12.31386 -12.26020 -12.05157 -11.71514 -11.65348 -11.51512 -11.46721 -10.87329 -10.70791 -10.56607 -10.36119 -9.54096 -8.82216 -8.23344 -6.44305 0.05287 0.45707 1.34628 1.36791 1.46219 2.06581 2.34911 2.39996 2.92052 3.00886 3.32109 3.45495 3.56322 3.74611 3.85550 3.95875 4.05800 4.18565 4.33954 4.37814 4.41261 4.44395 4.56167 4.58685 4.64508 4.67065 4.81944 4.88251 4.91561 4.92301 4.96055 5.05654 5.12055 5.26072 5.30801 5.55598 5.68656 5.81756 5.94539 6.02250 6.49057 6.51364 6.72479 6.99343 7.26385 7.41610 8.76728 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.006355 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.307960 B = 4405.099134 C = 5758.444741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.590 5.590 3 C 0.268 3.732 4 C -0.546 4.546 5 H 0.047 0.953 6 C 0.025 3.975 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.435 3.565 13 C -0.320 4.320 14 C 0.367 3.633 15 N -0.467 5.467 16 C 0.040 3.960 17 C -0.124 4.124 18 C -0.101 4.101 19 C 0.061 3.939 20 H 0.057 0.943 21 C 0.104 3.896 22 O -0.566 6.566 23 N -0.569 5.569 24 C 0.338 3.662 25 N -0.598 5.598 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.016 0.984 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.391 0.609 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -10.336 -4.198 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.299 5.299 3 C 0.147 3.853 4 C -0.585 4.585 5 H 0.065 0.935 6 C -0.176 4.176 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.197 1.197 12 C 0.192 3.808 13 C -0.352 4.352 14 C 0.133 3.867 15 N -0.190 5.190 16 C -0.086 4.086 17 C -0.162 4.162 18 C -0.139 4.139 19 C -0.046 4.046 20 H 0.075 0.925 21 C 0.025 3.975 22 O -0.373 6.373 23 N -0.291 5.291 24 C 0.047 3.953 25 N -0.324 5.324 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.240 0.760 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.769 -11.034 -3.742 12.589 hybrid contribution -0.092 2.104 0.444 2.152 sum 4.677 -8.930 -3.298 10.607 Atomic orbital electron populations 1.21566 0.78181 1.02641 1.01473 1.47007 1.06815 1.02919 1.73167 1.18987 0.91204 0.78878 0.96236 1.21600 1.37182 1.07029 0.92682 0.93474 1.25628 0.94814 0.96007 1.01151 1.70000 1.38324 1.14727 1.32607 0.85599 0.78736 0.77696 0.79977 1.19834 1.20094 1.19740 1.18653 0.88433 0.86879 0.86876 1.22569 0.95374 1.00665 1.16555 1.19876 0.90946 0.87123 0.88770 1.61666 1.00916 1.52609 1.03802 1.23002 0.97175 0.97473 0.90975 1.22395 0.95653 1.00618 0.97545 1.22380 0.94210 1.03089 0.94260 1.23139 0.96372 0.93784 0.91290 0.92535 1.21775 0.93016 0.87857 0.94841 1.86498 1.69076 1.38836 1.42865 1.68128 1.08451 1.31152 1.21328 1.25283 0.86753 0.95569 0.87656 1.68012 1.41492 0.97900 1.25010 0.92463 0.90756 0.91521 0.95581 0.96582 0.92112 0.85716 0.94883 0.89448 0.91356 0.88547 0.89375 0.88840 0.95691 0.90811 0.75990 0.75247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.73 10.44 127.77 1.33 5.06 16 2 N -0.59 -25.63 2.96 -732.87 -2.17 -27.80 16 3 C 0.27 13.30 4.81 85.63 0.41 13.71 16 4 C -0.55 -29.15 9.37 25.60 0.24 -28.91 16 5 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 6 C 0.02 1.31 5.46 84.66 0.46 1.77 16 7 N -0.92 -50.62 13.29 21.45 0.28 -50.33 16 8 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.44 18.44 7.38 132.97 0.98 19.42 16 13 C -0.32 -13.50 7.06 22.71 0.16 -13.34 16 14 C 0.37 14.07 5.55 132.95 0.74 14.80 16 15 N -0.47 -16.04 5.03 -665.60 -3.35 -19.39 16 16 C 0.04 1.31 6.52 86.45 0.56 1.87 16 17 C -0.12 -3.23 6.93 31.47 0.22 -3.01 16 18 C -0.10 -2.54 6.43 31.80 0.20 -2.33 16 19 C 0.06 1.85 2.62 45.26 0.12 1.97 16 20 H 0.06 1.93 6.68 -2.39 -0.02 1.91 16 21 C 0.10 2.66 6.95 71.98 0.50 3.16 16 22 O -0.57 -13.48 12.36 -148.98 -1.84 -15.32 16 23 N -0.57 -20.90 10.47 -197.85 -2.07 -22.97 16 24 C 0.34 11.11 12.28 180.92 2.22 13.33 16 25 N -0.60 -22.45 9.31 -197.83 -1.84 -24.29 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 2.52 7.48 -2.39 -0.02 2.50 16 28 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 29 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 30 H 0.02 0.86 6.44 -2.39 -0.02 0.84 16 31 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.12 5.82 5.48 -2.91 -0.02 5.80 16 33 H 0.03 1.24 6.71 -2.38 -0.02 1.22 16 34 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 2.28 7.01 -2.38 -0.02 2.27 16 39 H 0.02 0.72 7.92 -2.39 -0.02 0.71 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.39 5.54 9.12 -74.06 -0.68 4.87 16 42 H 0.23 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -64.76 342.07 -0.45 -65.21 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.36 Total: 23.26 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 8.15 Total: 27.51 kcal Atomic # 7 Polarization: -135.64 SS G_CDS: -9.15 Total: -144.79 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.84 Total: -15.32 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.76 -0.45 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590078371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.314 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds