Wall clock time and date at job start Fri Apr 10 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00611 * 2 1 4 4 C 1.50695 * 109.47241 * 270.00588 * 3 2 1 5 5 H 1.07999 * 120.00291 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99769 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99942 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00219 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47094 * 89.99889 * 8 6 4 10 10 H 1.48501 * 109.47304 * 210.00085 * 8 6 4 11 11 H 1.48502 * 109.47099 * 330.00076 * 8 6 4 12 12 C 1.34782 * 119.99561 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00046 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99980 * 0.02562 * 12 2 1 15 15 C 1.53003 * 109.47194 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47163 * 179.97438 * 15 14 12 17 17 C 1.46960 * 110.99729 * 189.99541 * 16 15 14 18 18 C 1.53504 * 109.66162 * 164.43776 * 17 16 15 19 19 C 1.50915 * 107.86386 * 49.23560 * 18 17 16 20 20 N 1.33293 * 128.91820 * 163.97391 * 19 18 17 21 21 C 1.30845 * 109.09911 * 180.23290 * 20 19 18 22 22 N 1.35380 * 108.78586 * 359.97438 * 21 20 19 23 23 H 0.97001 * 126.49965 * 179.97438 * 22 21 20 24 24 C 1.35255 * 123.02440 * 344.15507 * 19 18 17 25 25 C 1.47247 * 111.01701 * 65.39666 * 16 15 14 26 26 H 1.09006 * 109.46935 * 270.00269 * 1 2 3 27 27 H 1.09004 * 109.47159 * 29.99286 * 1 2 3 28 28 H 1.08998 * 109.47539 * 149.99576 * 1 2 3 29 29 H 1.09000 * 109.46729 * 30.00131 * 3 2 1 30 30 H 1.09005 * 109.47264 * 150.00031 * 3 2 1 31 31 H 0.96994 * 119.99827 * 180.02562 * 7 6 4 32 32 H 1.08990 * 109.47451 * 59.99754 * 14 12 2 33 33 H 1.09000 * 109.46921 * 299.99640 * 14 12 2 34 34 H 1.08998 * 109.47170 * 59.99099 * 15 14 12 35 35 H 1.09001 * 109.46661 * 300.00088 * 15 14 12 36 36 H 1.09001 * 109.43452 * 44.37697 * 17 16 15 37 37 H 1.08998 * 109.40377 * 284.47871 * 17 16 15 38 38 H 1.09002 * 109.78613 * 289.64272 * 18 17 16 39 39 H 1.09007 * 109.77949 * 168.82368 * 18 17 16 40 40 H 1.07995 * 125.60433 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.50295 * 55.56639 * 25 16 15 42 42 H 1.08990 * 109.86481 * 294.97724 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8779 -1.6726 7 7 3.3457 3.2574 -2.9126 8 14 3.7320 3.9297 -0.2528 9 1 5.1053 3.5088 0.1242 10 1 3.7470 5.3563 -0.6647 11 1 2.8254 3.7600 0.9111 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1674 -0.0010 14 6 1.3852 -2.4723 -0.0017 15 6 2.3793 -3.6354 -0.0014 16 7 1.6447 -4.9075 -0.0020 17 6 2.5514 -6.0392 0.2364 18 6 1.7359 -7.2835 0.6149 19 6 0.6301 -7.4386 -0.4003 20 7 -0.1328 -8.5024 -0.6515 21 6 -0.9676 -8.2123 -1.6163 22 7 -0.7530 -6.9346 -2.0091 23 1 -1.2289 -6.4579 -2.7071 24 6 0.2555 -6.4464 -1.2397 25 6 0.8856 -5.0784 -1.2520 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5138 31 1 3.8226 4.0832 -3.0897 32 1 0.7589 -2.5295 -0.8918 33 1 0.7582 -2.5306 0.8881 34 1 3.0054 -3.5780 0.8889 35 1 3.0067 -3.5772 -0.8909 36 1 3.2343 -5.7919 1.0492 37 1 3.1234 -6.2419 -0.6690 38 1 1.3085 -7.1560 1.6095 39 1 2.3779 -8.1643 0.5985 40 1 -1.7064 -8.8820 -2.0312 41 1 1.5616 -4.9929 -2.1028 42 1 0.1091 -4.3168 -1.3209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590599558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:06 Heat of formation + Delta-G solvation = 34.257618 kcal Electronic energy + Delta-G solvation = -23106.787907 eV Core-core repulsion = 19701.984309 eV Total energy + Delta-G solvation = -3404.803599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44611 -39.31053 -37.96802 -34.96999 -33.75099 -32.71688 -32.32820 -30.00180 -29.83596 -28.19077 -25.98615 -25.15064 -23.58875 -22.51670 -21.78805 -21.24727 -19.13320 -18.46991 -18.12323 -16.98909 -16.51851 -16.04660 -15.60686 -15.41237 -15.06122 -14.78561 -14.57017 -14.06289 -13.91771 -13.52959 -13.41416 -12.97973 -12.82981 -12.37664 -12.35426 -12.16826 -12.05495 -11.92768 -11.60390 -11.34986 -11.32019 -10.99196 -10.81973 -10.52953 -10.16543 -10.14517 -10.06082 -9.57167 -9.04064 -8.61278 -8.56117 -8.28239 -7.72433 -6.11397 -4.10235 1.79744 2.78353 2.92480 3.27674 3.32810 3.33784 3.35565 3.54324 4.02001 4.24639 4.37620 4.54933 4.78317 4.90582 5.00981 5.08827 5.14722 5.18482 5.24286 5.27900 5.34379 5.40869 5.53567 5.63908 5.69826 5.75860 5.82553 5.90112 6.00184 6.00856 6.06043 6.13996 6.52302 6.67539 6.83919 6.89171 6.93238 7.14543 7.31272 7.58778 7.87573 8.22591 8.44354 8.89648 8.96130 9.49059 11.02042 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.002942 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.219650 B = 9515.338203 C = 9801.824521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.544 6.544 14 C -0.135 4.135 15 C 0.074 3.926 16 N -0.535 5.535 17 C 0.056 3.944 18 C -0.028 4.028 19 C 0.013 3.987 20 N -0.486 5.486 21 C 0.173 3.827 22 N -0.556 5.556 23 H 0.420 0.580 24 C -0.027 4.027 25 C 0.130 3.870 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.208 0.792 41 H 0.053 0.947 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -19.449 4.270 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.294 3.706 13 O -0.422 6.422 14 C -0.176 4.176 15 C -0.054 4.054 16 N -0.260 5.260 17 C -0.072 4.072 18 C -0.067 4.067 19 C -0.118 4.118 20 N -0.205 5.205 21 C -0.109 4.109 22 N -0.159 5.159 23 H 0.258 0.742 24 C -0.144 4.144 25 C 0.002 3.998 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.225 0.775 41 H 0.070 0.930 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.529 -20.043 4.985 22.746 hybrid contribution 0.254 1.628 -1.079 1.969 sum -9.275 -18.415 3.906 20.986 Atomic orbital electron populations 1.21657 0.80940 1.02883 1.00514 1.47841 1.06288 1.07173 1.71756 1.19663 0.92496 0.80126 0.98314 1.21324 1.37018 1.07115 0.91274 0.90874 1.24870 0.95224 0.97370 0.95618 1.69898 1.41498 1.23608 1.18692 0.86830 0.80147 0.79710 0.82889 1.19874 1.21070 1.19035 1.20312 0.88047 0.85134 0.77156 1.90669 1.13982 1.87345 1.50160 1.21643 0.99318 0.92505 1.04105 1.21852 0.94437 0.86067 1.03015 1.61837 1.28052 1.02689 1.33465 1.22182 0.93862 0.90085 1.01074 1.20029 0.93139 0.96996 0.96511 1.20484 1.01071 0.89616 1.00616 1.69883 1.07201 1.28646 1.14785 1.25055 1.02967 0.85042 0.97868 1.42795 1.28929 1.13465 1.30730 0.74189 1.20880 0.96160 0.98429 0.98973 1.20444 0.97037 0.90592 0.91767 0.93569 0.90657 0.92199 0.95248 0.94524 0.92548 0.89651 0.88617 0.89293 0.93409 0.89462 0.94181 0.89871 0.90152 0.77536 0.92952 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.85 16 2 N -0.60 -12.06 2.86 -182.95 -0.52 -12.58 16 3 C 0.21 5.22 4.23 -5.20 -0.02 5.19 16 4 C -0.53 -15.11 9.94 -34.44 -0.34 -15.46 16 5 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 8 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 12 C 0.51 9.91 7.67 -10.98 -0.08 9.83 16 13 O -0.54 -12.95 15.56 5.56 0.09 -12.86 16 14 C -0.14 -1.84 4.16 -27.88 -0.12 -1.96 16 15 C 0.07 0.97 4.25 -3.82 -0.02 0.95 16 16 N -0.54 -6.04 4.62 -235.45 -1.09 -7.13 16 17 C 0.06 0.57 5.52 -3.53 -0.02 0.55 16 18 C -0.03 -0.29 6.52 -27.52 -0.18 -0.47 16 19 C 0.01 0.15 7.07 -82.92 -0.59 -0.43 16 20 N -0.49 -6.01 11.24 -10.70 -0.12 -6.13 16 21 C 0.17 1.51 13.05 -89.78 -1.17 0.34 16 22 N -0.56 -4.46 6.14 -10.25 -0.06 -4.52 16 23 H 0.42 1.94 8.96 -40.82 -0.37 1.57 16 24 C -0.03 -0.29 7.18 -81.88 -0.59 -0.88 16 25 C 0.13 1.35 5.43 -4.83 -0.03 1.33 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.16 8.07 -51.93 -0.42 0.75 16 28 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.09 1.04 5.91 -51.93 -0.31 0.73 16 33 H 0.10 1.15 8.11 -51.93 -0.42 0.72 16 34 H 0.09 1.20 7.82 -51.93 -0.41 0.80 16 35 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.09 0.80 7.81 -51.93 -0.41 0.39 16 37 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 42 H 0.09 0.84 6.73 -51.93 -0.35 0.49 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -36.73 340.27 -9.39 -46.12 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.27 Total: -0.84 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.64 Total: 2.83 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -1.02 Total: -57.19 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.73 -9.39 -46.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590599558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.376 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds