Wall clock time and date at job start Fri Apr 10 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00611 * 2 1 4 4 C 1.50695 * 109.47241 * 270.00588 * 3 2 1 5 5 H 1.07999 * 120.00291 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99769 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99942 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00219 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47094 * 89.99889 * 8 6 4 10 10 H 1.48501 * 109.47304 * 210.00085 * 8 6 4 11 11 H 1.48502 * 109.47099 * 330.00076 * 8 6 4 12 12 C 1.34782 * 119.99561 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00046 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99980 * 0.02562 * 12 2 1 15 15 C 1.53003 * 109.47194 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47163 * 179.97438 * 15 14 12 17 17 C 1.46960 * 110.99729 * 189.99541 * 16 15 14 18 18 C 1.53504 * 109.66162 * 164.43776 * 17 16 15 19 19 C 1.50915 * 107.86386 * 49.23560 * 18 17 16 20 20 N 1.33293 * 128.91820 * 163.97391 * 19 18 17 21 21 C 1.30845 * 109.09911 * 180.23290 * 20 19 18 22 22 N 1.35380 * 108.78586 * 359.97438 * 21 20 19 23 23 H 0.97001 * 126.49965 * 179.97438 * 22 21 20 24 24 C 1.35255 * 123.02440 * 344.15507 * 19 18 17 25 25 C 1.47247 * 111.01701 * 65.39666 * 16 15 14 26 26 H 1.09006 * 109.46935 * 270.00269 * 1 2 3 27 27 H 1.09004 * 109.47159 * 29.99286 * 1 2 3 28 28 H 1.08998 * 109.47539 * 149.99576 * 1 2 3 29 29 H 1.09000 * 109.46729 * 30.00131 * 3 2 1 30 30 H 1.09005 * 109.47264 * 150.00031 * 3 2 1 31 31 H 0.96994 * 119.99827 * 180.02562 * 7 6 4 32 32 H 1.08990 * 109.47451 * 59.99754 * 14 12 2 33 33 H 1.09000 * 109.46921 * 299.99640 * 14 12 2 34 34 H 1.08998 * 109.47170 * 59.99099 * 15 14 12 35 35 H 1.09001 * 109.46661 * 300.00088 * 15 14 12 36 36 H 1.09001 * 109.43452 * 44.37697 * 17 16 15 37 37 H 1.08998 * 109.40377 * 284.47871 * 17 16 15 38 38 H 1.09002 * 109.78613 * 289.64272 * 18 17 16 39 39 H 1.09007 * 109.77949 * 168.82368 * 18 17 16 40 40 H 1.07995 * 125.60433 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.50295 * 55.56639 * 25 16 15 42 42 H 1.08990 * 109.86481 * 294.97724 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8779 -1.6726 7 7 3.3457 3.2574 -2.9126 8 14 3.7320 3.9297 -0.2528 9 1 5.1053 3.5088 0.1242 10 1 3.7470 5.3563 -0.6647 11 1 2.8254 3.7600 0.9111 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1674 -0.0010 14 6 1.3852 -2.4723 -0.0017 15 6 2.3793 -3.6354 -0.0014 16 7 1.6447 -4.9075 -0.0020 17 6 2.5514 -6.0392 0.2364 18 6 1.7359 -7.2835 0.6149 19 6 0.6301 -7.4386 -0.4003 20 7 -0.1328 -8.5024 -0.6515 21 6 -0.9676 -8.2123 -1.6163 22 7 -0.7530 -6.9346 -2.0091 23 1 -1.2289 -6.4579 -2.7071 24 6 0.2555 -6.4464 -1.2397 25 6 0.8856 -5.0784 -1.2520 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1382 0.5138 31 1 3.8226 4.0832 -3.0897 32 1 0.7589 -2.5295 -0.8918 33 1 0.7582 -2.5306 0.8881 34 1 3.0054 -3.5780 0.8889 35 1 3.0067 -3.5772 -0.8909 36 1 3.2343 -5.7919 1.0492 37 1 3.1234 -6.2419 -0.6690 38 1 1.3085 -7.1560 1.6095 39 1 2.3779 -8.1643 0.5985 40 1 -1.7064 -8.8820 -2.0312 41 1 1.5616 -4.9929 -2.1028 42 1 0.1091 -4.3168 -1.3209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590599558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:05 Heat of formation + Delta-G solvation = 7.227468 kcal Electronic energy + Delta-G solvation = -23107.960023 eV Core-core repulsion = 19701.984309 eV Total energy + Delta-G solvation = -3405.975714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.17377 -40.77301 -38.94904 -36.62851 -34.78002 -34.51028 -33.42167 -31.18624 -30.76678 -29.74515 -27.34015 -26.17794 -24.81731 -23.78577 -22.53476 -22.47958 -19.97128 -19.84092 -19.15203 -18.91878 -17.86643 -17.11468 -16.97606 -16.59151 -16.13034 -16.05550 -15.75472 -15.30032 -14.84481 -14.67123 -14.56469 -14.26097 -14.06165 -13.85881 -13.65817 -13.58152 -13.27077 -13.00533 -12.98484 -12.74879 -12.48033 -12.28207 -12.15489 -12.06198 -11.86968 -11.74586 -10.92001 -10.83606 -10.82869 -10.64747 -9.46480 -9.37055 -9.06522 -8.34757 -6.39690 1.07372 1.33092 1.37039 1.45494 1.82600 2.09485 2.15718 2.30792 2.33234 2.91445 3.00152 3.56577 3.78261 3.85537 3.90610 4.09493 4.15173 4.28272 4.37678 4.40591 4.47317 4.49653 4.61108 4.67221 4.69245 4.83883 4.85737 4.88974 4.92049 5.00715 5.01049 5.06131 5.13005 5.22692 5.45949 5.63008 5.73806 5.96795 5.98038 6.23428 6.59059 6.61601 6.72260 7.14878 7.21437 7.44053 8.82203 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.002942 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.219650 B = 9515.338203 C = 9801.824521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.535 4.535 5 H 0.029 0.971 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.237 1.237 12 C 0.497 3.503 13 O -0.597 6.597 14 C -0.117 4.117 15 C 0.082 3.918 16 N -0.532 5.532 17 C 0.057 3.943 18 C -0.024 4.024 19 C -0.015 4.015 20 N -0.530 5.530 21 C 0.185 3.815 22 N -0.545 5.545 23 H 0.437 0.563 24 C -0.038 4.038 25 C 0.131 3.869 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.018 0.982 31 H 0.268 0.732 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.025 0.975 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.247 0.753 41 H 0.048 0.952 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 -20.001 5.625 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.047 0.953 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.160 1.160 12 C 0.286 3.714 13 O -0.479 6.479 14 C -0.157 4.157 15 C -0.046 4.046 16 N -0.256 5.256 17 C -0.071 4.071 18 C -0.063 4.063 19 C -0.145 4.145 20 N -0.249 5.249 21 C -0.098 4.098 22 N -0.149 5.149 23 H 0.278 0.722 24 C -0.156 4.156 25 C 0.002 3.998 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.659 -20.606 6.335 24.509 hybrid contribution 0.830 1.686 -1.613 2.477 sum -10.829 -18.920 4.722 22.306 Atomic orbital electron populations 1.21975 0.77530 1.03978 1.02991 1.47979 1.08508 1.05972 1.71525 1.19334 0.92797 0.82744 0.95225 1.21575 1.36712 1.06655 0.92466 0.95297 1.25869 0.95333 0.99010 0.98616 1.70050 1.42791 1.24537 1.21302 0.85706 0.79581 0.77713 0.79904 1.20227 1.20069 1.16012 1.21352 0.87797 0.86696 0.75573 1.90639 1.16584 1.88227 1.52430 1.21572 0.98941 0.88844 1.06354 1.21674 0.94184 0.87005 1.01709 1.61844 1.27762 1.02031 1.34009 1.22207 0.93859 0.89834 1.01168 1.20001 0.93015 0.97023 0.96258 1.20797 1.01849 0.90228 1.01620 1.69865 1.08741 1.29485 1.16841 1.25846 1.02179 0.85404 0.96348 1.42773 1.28194 1.13353 1.30605 0.72228 1.20878 0.96998 0.98232 0.99466 1.20479 0.97146 0.91109 0.91083 0.90238 0.91754 0.89061 0.93226 0.96348 0.92281 0.87519 0.85727 0.90003 0.95628 0.88590 0.94723 0.89969 0.89699 0.73672 0.93446 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.05 10.24 127.77 1.31 3.36 16 2 N -0.61 -23.79 2.86 -851.13 -2.43 -26.23 16 3 C 0.22 10.66 4.23 85.63 0.36 11.02 16 4 C -0.54 -31.30 9.94 25.60 0.25 -31.05 16 5 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 6 C 0.01 0.56 5.47 84.65 0.46 1.03 16 7 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 8 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 12 C 0.50 19.11 7.67 87.66 0.67 19.78 16 13 O -0.60 -29.06 15.56 -3.03 -0.05 -29.11 16 14 C -0.12 -2.93 4.16 29.85 0.12 -2.81 16 15 C 0.08 2.09 4.25 86.30 0.37 2.45 16 16 N -0.53 -11.25 4.62 -898.83 -4.16 -15.40 16 17 C 0.06 1.14 5.52 86.46 0.48 1.62 16 18 C -0.02 -0.49 6.52 30.09 0.20 -0.29 16 19 C -0.01 -0.35 7.07 41.72 0.30 -0.05 16 20 N -0.53 -12.38 11.24 -187.76 -2.11 -14.49 16 21 C 0.19 2.78 13.05 180.05 2.35 5.13 16 22 N -0.55 -7.40 6.14 -186.35 -1.14 -8.54 16 23 H 0.44 2.77 8.96 -92.71 -0.83 1.94 16 24 C -0.04 -0.75 7.18 41.21 0.30 -0.45 16 25 C 0.13 2.48 5.43 85.47 0.46 2.95 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 1.86 8.07 -2.39 -0.02 1.84 16 28 H 0.09 1.84 6.44 -2.39 -0.02 1.82 16 29 H 0.05 2.19 7.13 -2.39 -0.02 2.17 16 30 H 0.02 0.95 6.85 -2.38 -0.02 0.94 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.11 2.25 5.91 -2.39 -0.01 2.24 16 33 H 0.12 2.48 8.11 -2.39 -0.02 2.46 16 34 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 35 H 0.03 0.76 8.05 -2.39 -0.02 0.74 16 36 H 0.10 1.70 7.81 -2.39 -0.02 1.68 16 37 H 0.03 0.72 8.07 -2.39 -0.02 0.70 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.25 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 42 H 0.10 1.64 6.73 -2.39 -0.02 1.62 16 Total: -1.00 -83.47 340.27 0.07 -83.40 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.15 Total: 10.98 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 7.63 Total: 12.68 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -9.54 Total: -124.08 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -83.47 0.07 -83.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590599558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.632 kcal (2) G-P(sol) polarization free energy of solvation -83.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds