Wall clock time and date at job start Fri Apr 10 2020 14:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00271 * 2 1 4 4 C 1.50703 * 109.47067 * 269.99875 * 3 2 1 5 5 H 1.08005 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00286 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00171 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99869 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47168 * 90.00127 * 8 6 4 10 10 H 1.48505 * 109.47084 * 209.99952 * 8 6 4 11 11 H 1.48501 * 109.47042 * 330.00023 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00162 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00141 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47429 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.46858 * 111.00097 * 169.99981 * 16 15 14 18 18 C 1.53550 * 109.86187 * 51.43358 * 17 16 15 19 19 C 1.50939 * 107.63793 * 49.77709 * 18 17 16 20 20 C 1.34298 * 129.19559 * 164.15697 * 19 18 17 21 21 N 1.35281 * 107.57496 * 180.17162 * 20 19 18 22 22 H 0.96999 * 125.99959 * 179.97438 * 21 20 19 23 23 N 1.40382 * 108.00676 * 359.96225 * 21 20 19 24 24 C 1.29909 * 108.12196 * 359.93658 * 23 21 20 25 25 C 1.47304 * 110.99831 * 294.91212 * 16 15 14 26 26 H 1.09002 * 109.47335 * 270.00739 * 1 2 3 27 27 H 1.08999 * 109.46626 * 30.00758 * 1 2 3 28 28 H 1.08996 * 109.47068 * 150.00171 * 1 2 3 29 29 H 1.09005 * 109.47188 * 29.99177 * 3 2 1 30 30 H 1.08999 * 109.47701 * 150.00044 * 3 2 1 31 31 H 0.96997 * 119.99597 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47043 * 59.99777 * 14 12 2 33 33 H 1.09004 * 109.47476 * 299.99851 * 14 12 2 34 34 H 1.09004 * 109.46862 * 60.00067 * 15 14 12 35 35 H 1.09000 * 109.47250 * 300.00090 * 15 14 12 36 36 H 1.08998 * 109.40860 * 171.54850 * 17 16 15 37 37 H 1.08997 * 109.40811 * 291.31786 * 17 16 15 38 38 H 1.09001 * 109.82722 * 169.31394 * 18 17 16 39 39 H 1.09003 * 109.82781 * 290.17943 * 18 17 16 40 40 H 1.07997 * 126.21358 * 0.14507 * 20 19 18 41 41 H 1.08997 * 109.75180 * 47.22760 * 25 16 15 42 42 H 1.09007 * 109.74618 * 167.94933 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.3467 3.2566 -2.9128 8 14 3.7341 3.9285 -0.2530 9 1 5.1071 3.5067 0.1236 10 1 3.7501 5.3552 -0.6650 11 1 2.8275 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 2.5511 -6.0384 -0.2369 18 6 3.7385 -5.9689 0.7341 19 6 3.1823 -5.7744 2.1237 20 6 3.7875 -5.9402 3.3110 21 7 2.8832 -5.6500 4.2745 22 1 3.0391 -5.6831 5.2313 23 7 1.6797 -5.2925 3.6465 24 6 1.8573 -5.3645 2.3617 25 6 0.8798 -5.0746 1.2487 26 1 -0.3634 0.0001 1.0277 27 1 -0.3632 0.8899 -0.5140 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5137 30 1 3.1500 1.1384 0.5138 31 1 3.8236 4.0825 -3.0900 32 1 0.7590 -2.5302 -0.8897 33 1 0.7584 -2.5299 0.8903 34 1 3.0062 -3.5775 0.8906 35 1 3.0062 -3.5775 -0.8894 36 1 2.0118 -6.9731 -0.0831 37 1 2.9188 -5.9983 -1.2622 38 1 4.3070 -6.8979 0.6901 39 1 4.3821 -5.1292 0.4716 40 1 4.8102 -6.2495 3.4682 41 1 0.3311 -4.1591 1.4697 42 1 0.1829 -5.9063 1.1447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611302942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:08 Heat of formation + Delta-G solvation = 53.430950 kcal Electronic energy + Delta-G solvation = -23630.139511 eV Core-core repulsion = 20226.167330 eV Total energy + Delta-G solvation = -3403.972181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74282 -39.22345 -38.01926 -34.87321 -32.92368 -32.46721 -32.07445 -30.46186 -28.82630 -28.32761 -26.13445 -25.56671 -23.93537 -22.19293 -21.42047 -21.11395 -18.82328 -18.25977 -17.78543 -16.92936 -16.51196 -15.77500 -15.64568 -15.27859 -14.90821 -14.79035 -14.49378 -13.97386 -13.61259 -13.54337 -13.15175 -12.68701 -12.60810 -12.33843 -12.30182 -12.08551 -11.97704 -11.85113 -11.60629 -11.28850 -11.21705 -10.95069 -10.77196 -10.50638 -10.45843 -10.11446 -9.57630 -9.50872 -8.94478 -8.61543 -8.56101 -8.48257 -7.64417 -6.05895 -4.04223 1.72413 2.54008 2.66158 3.31026 3.36954 3.38888 3.42388 3.65669 4.11814 4.33374 4.42167 4.54647 4.89035 4.94946 5.05266 5.19354 5.22926 5.29083 5.35476 5.40137 5.41792 5.54876 5.62345 5.68411 5.78365 5.87871 5.89804 5.92203 5.95586 6.14783 6.20773 6.24410 6.44021 6.73932 6.88104 6.97696 6.99092 7.11289 7.39301 7.49962 7.64588 8.31067 8.50744 8.96756 9.04847 9.54774 11.07586 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022797 B = 0.003589 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.938894 B = 7800.466406 C = 7990.528502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.545 6.545 14 C -0.136 4.136 15 C 0.067 3.933 16 N -0.526 5.526 17 C 0.058 3.942 18 C -0.080 4.080 19 C -0.236 4.236 20 C 0.063 3.937 21 N -0.489 5.489 22 H 0.438 0.562 23 N -0.281 5.281 24 C 0.049 3.951 25 C 0.129 3.871 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.175 0.825 41 H 0.097 0.903 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -20.648 11.263 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.423 6.423 14 C -0.177 4.177 15 C -0.060 4.060 16 N -0.247 5.247 17 C -0.070 4.070 18 C -0.120 4.120 19 C -0.248 4.248 20 C -0.082 4.082 21 N -0.197 5.197 22 H 0.281 0.719 23 N -0.104 5.104 24 C -0.122 4.122 25 C -0.001 4.001 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.192 0.808 41 H 0.115 0.885 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.508 -20.200 11.668 23.759 hybrid contribution 1.678 0.497 1.308 2.184 sum -2.830 -19.703 12.975 23.761 Atomic orbital electron populations 1.21668 0.80919 1.03109 1.00378 1.47831 1.06301 1.07128 1.71849 1.19645 0.92417 0.80195 0.98311 1.21348 1.36808 1.07094 0.91316 0.90712 1.24858 0.95276 0.97360 0.95541 1.69901 1.41584 1.23577 1.18619 0.86851 0.80099 0.79746 0.82994 1.19959 1.21066 1.19114 1.20324 0.88044 0.85151 0.77020 1.90655 1.14047 1.87369 1.50199 1.21671 0.99385 0.92585 1.04018 1.21879 0.94811 0.86438 1.02899 1.62369 1.27729 1.02895 1.31745 1.22205 0.92015 0.93694 0.99071 1.20688 0.98676 1.02388 0.90218 1.20059 0.94982 1.13942 0.95824 1.21946 0.96303 1.01269 0.88693 1.46397 1.08436 1.56113 1.08781 0.71866 1.76923 1.03897 1.22086 1.07447 1.23363 0.96711 0.98922 0.93198 1.20932 0.93207 1.03226 0.82765 0.93793 0.90644 0.91868 0.95346 0.94692 0.92601 0.88381 0.89806 0.93099 0.89581 0.90598 0.89705 0.90739 0.90405 0.80785 0.88465 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.66 2.86 -182.95 -0.52 -13.18 16 3 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 4 C -0.53 -15.42 9.94 -34.44 -0.34 -15.77 16 5 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 8 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 9 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 12 C 0.51 10.53 7.67 -10.99 -0.08 10.45 16 13 O -0.54 -13.58 15.56 5.56 0.09 -13.50 16 14 C -0.14 -2.03 4.19 -27.89 -0.12 -2.15 16 15 C 0.07 0.96 3.24 -3.82 -0.01 0.95 16 16 N -0.53 -5.99 4.93 -235.25 -1.16 -7.15 16 17 C 0.06 0.56 5.91 -3.56 -0.02 0.54 16 18 C -0.08 -0.79 5.73 -27.48 -0.16 -0.94 16 19 C -0.24 -2.68 5.17 -104.96 -0.54 -3.22 16 20 C 0.06 0.60 11.96 -17.42 -0.21 0.39 16 21 N -0.49 -4.87 7.38 30.32 0.22 -4.65 16 22 H 0.44 2.89 8.96 -182.38 -1.63 1.25 16 23 N -0.28 -3.64 12.67 33.76 0.43 -3.22 16 24 C 0.05 0.61 6.59 -82.35 -0.54 0.07 16 25 C 0.13 1.40 6.05 -4.64 -0.03 1.37 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 33 H 0.08 1.09 6.26 -51.93 -0.33 0.77 16 34 H 0.05 0.82 5.92 -51.93 -0.31 0.52 16 35 H 0.09 1.33 8.04 -51.93 -0.42 0.92 16 36 H 0.08 0.64 8.06 -51.93 -0.42 0.23 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.88 7.22 -51.93 -0.37 0.50 16 40 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.10 1.04 5.99 -51.93 -0.31 0.73 16 42 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -36.77 335.29 -8.70 -45.48 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.36 Total: 0.12 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.56 Total: 1.02 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.26 Total: -55.43 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.77 -8.70 -45.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611302942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.909 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds