Wall clock time and date at job start Fri Apr 10 2020 14:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99793 * 2 1 4 4 C 1.50700 * 109.47179 * 180.02562 * 3 2 1 5 5 N 1.31791 * 119.08211 * 269.97652 * 4 3 2 6 6 C 1.32551 * 121.00661 * 179.97438 * 5 4 3 7 7 C 1.38113 * 119.20059 * 359.72393 * 6 5 4 8 8 C 1.39616 * 118.33417 * 0.55689 * 7 6 5 9 9 N 1.38545 * 120.53357 * 179.71033 * 8 7 6 10 10 C 1.46955 * 111.00114 * 303.52983 * 9 8 7 11 11 C 1.53059 * 109.36265 * 176.81135 * 10 9 8 12 12 N 1.46952 * 109.36756 * 58.39626 * 11 10 9 13 13 C 1.46896 * 110.99993 * 176.81042 * 12 11 10 14 14 C 1.50700 * 109.47099 * 58.98361 * 13 12 11 15 15 H 1.08000 * 119.99731 * 5.00571 * 14 13 12 16 16 C 1.37876 * 120.00007 * 185.01258 * 14 13 12 17 17 N 1.31508 * 120.00324 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99996 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46881 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47172 * 119.99680 * 18 16 14 21 21 H 1.48500 * 109.46988 * 239.99594 * 18 16 14 22 22 C 1.46955 * 110.88378 * 300.68132 * 12 11 10 23 23 C 1.46961 * 111.00008 * 179.72488 * 9 8 7 24 24 N 1.31750 * 119.08427 * 89.99494 * 4 3 2 25 25 H 1.09003 * 109.47140 * 300.00170 * 1 2 3 26 26 H 1.08999 * 109.46802 * 60.00151 * 1 2 3 27 27 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47524 * 59.99872 * 3 2 1 29 29 H 1.09011 * 109.47159 * 299.99739 * 3 2 1 30 30 H 1.07997 * 120.39650 * 180.02562 * 6 5 4 31 31 H 1.08010 * 120.83393 * 180.27981 * 7 6 5 32 32 H 1.09002 * 109.48811 * 296.76969 * 10 9 8 33 33 H 1.08996 * 109.48939 * 56.84504 * 10 9 8 34 34 H 1.09004 * 109.48321 * 298.43046 * 11 10 9 35 35 H 1.08994 * 109.48501 * 178.37009 * 11 10 9 36 36 H 1.09002 * 109.47311 * 178.97755 * 13 12 11 37 37 H 1.09001 * 109.47408 * 298.98055 * 13 12 11 38 38 H 0.96995 * 120.00511 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.48811 * 299.35744 * 22 12 11 40 40 H 1.08997 * 109.49389 * 179.28485 * 22 12 11 41 41 H 1.08999 * 109.48973 * 303.15357 * 23 9 8 42 42 H 1.08993 * 109.48764 * 63.20220 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.1516 1.1363 1.1508 6 6 5.4722 1.0312 1.1948 7 6 6.1829 0.9683 0.0122 8 6 5.4757 1.0303 -1.1900 9 7 6.1432 0.9772 -2.4028 10 6 7.1534 2.0405 -2.4950 11 6 7.9206 1.8988 -3.8119 12 7 6.9771 1.9738 -4.9360 13 6 7.6849 1.9174 -6.2220 14 6 8.4693 0.6336 -6.3078 15 1 8.3813 -0.1063 -5.5259 16 6 9.2994 0.4035 -7.3843 17 7 9.4063 1.3042 -8.3366 18 14 10.2724 -1.1876 -7.4903 19 1 9.9783 -2.0277 -6.3016 20 1 9.8884 -1.9214 -8.7229 21 1 11.7242 -0.8782 -7.5304 22 6 5.9669 0.9105 -4.8438 23 6 5.1996 1.0521 -3.5270 24 7 4.1505 1.1361 -1.1523 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8901 30 1 5.9859 0.9904 2.1439 31 1 7.2592 0.8780 0.0173 32 1 6.6618 3.0128 -2.4634 33 1 7.8475 1.9561 -1.6589 34 1 8.4343 0.9377 -3.8317 35 1 8.6508 2.7036 -3.8956 36 1 6.9618 1.9565 -7.0367 37 1 8.3657 2.7651 -6.2995 38 1 9.9900 1.1423 -9.0941 39 1 6.4585 -0.0619 -4.8754 40 1 5.2727 0.9948 -5.6800 41 1 4.4695 0.2472 -3.4433 42 1 4.6856 2.0130 -3.5068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895028086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:18 Heat of formation + Delta-G solvation = 7.464711 kcal Electronic energy + Delta-G solvation = -23344.382892 eV Core-core repulsion = 19938.417466 eV Total energy + Delta-G solvation = -3405.965426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33996 -40.25273 -38.76099 -37.18503 -34.72196 -34.23810 -32.84034 -31.99618 -29.66639 -29.09722 -27.08393 -26.82547 -25.07898 -24.46920 -23.49147 -22.89124 -20.92486 -18.93068 -18.59470 -18.35399 -17.60152 -16.94522 -16.58994 -16.51224 -16.28471 -16.18399 -15.91852 -15.65590 -15.49601 -15.03397 -14.81375 -14.61798 -13.91121 -13.68734 -13.55374 -13.26394 -12.99073 -12.88086 -12.55075 -12.39961 -12.35611 -12.25754 -12.07419 -11.94820 -11.76873 -11.61818 -11.53348 -10.90918 -10.73940 -10.62006 -10.33024 -9.54196 -9.09234 -8.17093 -6.35905 -0.18011 0.10594 1.35538 1.37803 1.49064 2.26930 2.35809 2.36840 2.87613 3.08566 3.18160 3.28737 3.41856 3.72857 3.90684 4.05222 4.11568 4.18478 4.25741 4.31360 4.35894 4.42121 4.51678 4.54035 4.56371 4.59815 4.63474 4.77888 4.86712 4.93767 5.02856 5.11993 5.19922 5.27984 5.32242 5.46828 5.72646 5.91122 6.01704 6.07838 6.13718 6.21258 6.43084 6.84076 7.09638 7.35725 8.86072 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.003302 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.861928 B = 8477.549229 C = 8854.012132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.136 3.864 4 C 0.325 3.675 5 N -0.542 5.542 6 C 0.164 3.836 7 C -0.236 4.236 8 C 0.342 3.658 9 N -0.480 5.480 10 C 0.076 3.924 11 C 0.064 3.936 12 N -0.544 5.544 13 C 0.201 3.799 14 C -0.555 4.555 15 H 0.056 0.944 16 C 0.014 3.986 17 N -0.925 5.925 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.276 1.276 22 C 0.065 3.935 23 C 0.088 3.912 24 N -0.563 5.563 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.211 0.789 31 H 0.174 0.826 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.004 0.996 37 H 0.013 0.987 38 H 0.265 0.735 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 0.860 20.287 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C 0.058 3.942 4 C 0.055 3.945 5 N -0.260 5.260 6 C 0.001 3.999 7 C -0.260 4.260 8 C 0.103 3.897 9 N -0.198 5.198 10 C -0.049 4.049 11 C -0.065 4.065 12 N -0.268 5.268 13 C 0.074 3.926 14 C -0.594 4.594 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.565 5.565 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.202 1.202 22 C -0.064 4.064 23 C -0.039 4.039 24 N -0.285 5.285 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.228 0.772 31 H 0.191 0.809 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.022 0.978 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.483 0.829 20.036 23.621 hybrid contribution 1.460 -0.883 -0.956 1.956 sum -11.023 -0.055 19.081 22.036 Atomic orbital electron populations 1.22984 0.78175 1.04104 1.01497 1.87880 1.22449 1.27058 1.95750 1.21027 0.84055 0.85895 1.03266 1.22880 0.97404 0.91022 0.83243 1.68260 1.11397 1.16819 1.29546 1.23702 0.88578 0.87924 0.99657 1.22714 1.04223 1.07177 0.91924 1.20428 0.88542 0.89147 0.91631 1.59068 1.15281 1.44834 1.00568 1.22412 0.92954 0.90485 0.99050 1.21990 0.94315 1.01051 0.89097 1.62653 1.15396 1.45003 1.03723 1.19400 0.91956 0.95042 0.86154 1.21979 1.26152 1.04561 1.06686 0.92576 1.25775 0.97722 0.99827 0.95266 1.70056 1.39308 1.36181 1.10963 0.85535 0.78533 0.79712 0.78063 1.19365 1.20531 1.20182 1.21995 0.94481 0.93572 0.96378 1.21917 0.92742 1.01864 0.87378 1.68135 1.09780 1.18746 1.31825 0.92085 0.92786 0.88535 0.88767 0.90072 0.77208 0.80883 0.92865 0.86663 0.94822 0.90164 0.97789 0.96892 0.92568 0.95575 0.90964 0.89953 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.73 10.69 -148.98 -1.59 -11.32 16 3 C 0.14 2.90 6.37 71.24 0.45 3.36 16 4 C 0.32 8.69 7.27 138.76 1.01 9.70 16 5 N -0.54 -13.23 10.33 -188.11 -1.94 -15.18 16 6 C 0.16 3.11 11.29 84.55 0.95 4.07 16 7 C -0.24 -5.01 9.30 22.57 0.21 -4.80 16 8 C 0.34 9.69 6.40 133.16 0.85 10.54 16 9 N -0.48 -14.89 4.73 -700.79 -3.32 -18.21 16 10 C 0.08 2.17 5.38 86.31 0.46 2.64 16 11 C 0.06 2.37 5.24 86.31 0.45 2.82 16 12 N -0.54 -23.15 4.92 -900.27 -4.43 -27.58 16 13 C 0.20 10.45 5.14 85.56 0.44 10.89 16 14 C -0.55 -30.42 7.66 25.60 0.20 -30.22 16 15 H 0.06 3.07 5.82 -2.91 -0.02 3.05 16 16 C 0.01 0.76 5.46 84.66 0.46 1.22 16 17 N -0.93 -54.55 13.29 21.45 0.28 -54.26 16 18 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.06 2.56 5.32 86.31 0.46 3.02 16 23 C 0.09 2.96 4.80 86.31 0.41 3.37 16 24 N -0.56 -16.82 8.77 -185.44 -1.63 -18.45 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.57 16 30 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.17 2.74 7.28 -2.91 -0.02 2.72 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.12 2.50 6.88 -2.39 -0.02 2.48 16 34 H 0.03 1.39 6.62 -2.38 -0.02 1.37 16 35 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.00 0.22 8.12 -2.39 -0.02 0.20 16 37 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.03 1.15 6.78 -2.39 -0.02 1.13 16 40 H 0.07 2.85 8.12 -2.39 -0.02 2.83 16 41 H 0.08 2.76 7.84 -2.39 -0.02 2.74 16 42 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 Total: -1.00 -68.84 341.23 -1.97 -70.81 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.01 Total: 10.14 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 7.62 Total: 18.24 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -11.03 Total: -133.67 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.59 Total: -11.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.84 -1.97 -70.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895028086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.279 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds