Wall clock time and date at job start Fri Apr 10 2020 14:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36948 * 119.99883 * 2 1 4 4 H 1.07993 * 119.99592 * 203.34925 * 3 2 1 5 5 C 1.38811 * 119.99834 * 23.34497 * 3 2 1 6 6 N 1.31616 * 120.00357 * 14.28120 * 5 3 2 7 7 Si 1.86801 * 119.99729 * 194.27590 * 5 3 2 8 8 H 1.48501 * 109.46977 * 90.00618 * 7 5 3 9 9 H 1.48505 * 109.46846 * 210.00069 * 7 5 3 10 10 H 1.48493 * 109.46997 * 330.00208 * 7 5 3 11 11 C 1.46494 * 120.00057 * 179.97438 * 2 1 3 12 12 H 1.09008 * 110.78119 * 181.78825 * 11 2 1 13 13 C 1.55157 * 110.71814 * 58.55059 * 11 2 1 14 14 C 1.54916 * 101.58068 * 206.13282 * 13 11 2 15 15 N 1.47421 * 104.83188 * 37.00822 * 14 13 11 16 16 C 1.34777 * 125.64959 * 155.82377 * 15 14 13 17 17 O 1.21284 * 120.00016 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99931 * 0.02620 * 16 15 14 19 19 C 1.52996 * 109.47175 * 179.97438 * 18 16 15 20 20 C 1.50705 * 109.47119 * 179.97438 * 19 18 16 21 21 C 1.34662 * 126.59132 * 274.69109 * 20 19 18 22 22 N 1.34130 * 108.02076 * 179.87609 * 21 20 19 23 23 C 1.30498 * 109.25632 * 0.39608 * 22 21 20 24 24 N 1.35047 * 108.69712 * 359.75846 * 23 22 21 25 25 H 0.97005 * 126.39832 * 180.02562 * 24 23 22 26 26 C 1.47026 * 108.70399 * 335.87218 * 15 14 13 27 27 H 1.08998 * 109.47300 * 275.18273 * 1 2 3 28 28 H 1.09009 * 109.47183 * 35.18297 * 1 2 3 29 29 H 1.08995 * 109.46863 * 155.17961 * 1 2 3 30 30 H 0.97001 * 120.00681 * 179.97438 * 6 5 3 31 31 H 1.08996 * 111.00444 * 324.20831 * 13 11 2 32 32 H 1.09006 * 111.00356 * 88.06319 * 13 11 2 33 33 H 1.08997 * 110.36724 * 155.85000 * 14 13 11 34 34 H 1.08994 * 110.36578 * 278.06370 * 14 13 11 35 35 H 1.09003 * 109.47076 * 300.00092 * 18 16 15 36 36 H 1.09005 * 109.46888 * 59.99891 * 18 16 15 37 37 H 1.08990 * 109.47792 * 300.00168 * 19 18 16 38 38 H 1.09005 * 109.46998 * 60.00330 * 19 18 16 39 39 H 1.08005 * 125.99382 * 0.02562 * 21 20 19 40 40 H 1.07997 * 125.65159 * 179.73413 * 23 22 21 41 41 H 1.08998 * 109.88441 * 241.63969 * 26 15 14 42 42 H 1.08995 * 109.88340 * 120.47479 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1633 1.2243 -0.3707 5 6 1.5408 2.3389 0.4764 6 7 0.4312 2.2549 1.1792 7 14 2.2964 4.0097 0.1200 8 1 1.7441 4.5416 -1.1517 9 1 1.9755 4.9446 1.2283 10 1 3.7700 3.8711 0.0002 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0943 0.0323 13 6 1.8162 -2.1232 -1.2371 14 6 2.1009 -3.5571 -0.7246 15 7 1.6925 -3.5397 0.6918 16 6 1.3237 -4.6147 1.4162 17 8 1.0054 -4.4822 2.5790 18 6 1.3069 -5.9814 0.7814 19 6 0.8553 -7.0172 1.8129 20 6 0.8379 -8.3839 1.1778 21 6 -0.1689 -8.9256 0.4663 22 7 0.2115 -10.1511 0.0757 23 6 1.4125 -10.3926 0.5254 24 7 1.8400 -9.3154 1.2186 25 1 2.6973 -9.2194 1.6622 26 6 1.7531 -2.1553 1.1829 27 1 -0.3634 0.0928 1.0234 28 1 -0.3634 0.8400 -0.5922 29 1 -0.3633 -0.9327 -0.4314 30 1 0.0059 3.0605 1.5125 31 1 0.7626 -1.9998 -1.4875 32 1 2.4500 -1.8801 -2.0900 33 1 1.5088 -4.2835 -1.2813 34 1 3.1626 -3.7874 -0.8122 35 1 0.6156 -5.9820 -0.0614 36 1 2.3081 -6.2312 0.4303 37 1 1.5468 -7.0165 2.6554 38 1 -0.1459 -6.7675 2.1643 39 1 -1.1157 -8.4548 0.2463 40 1 1.9718 -11.3033 0.3694 41 1 2.4769 -2.0811 1.9945 42 1 0.7689 -1.8422 1.5315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971652335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:44 Heat of formation + Delta-G solvation = 46.176318 kcal Electronic energy + Delta-G solvation = -22989.186797 eV Core-core repulsion = 19584.900032 eV Total energy + Delta-G solvation = -3404.286765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27740 -39.81818 -37.56113 -34.81411 -34.08397 -32.56057 -31.67870 -29.85937 -29.18119 -27.75975 -26.07797 -24.89365 -23.02261 -22.36004 -21.77648 -20.96370 -19.30646 -18.94418 -18.17797 -17.08899 -16.75096 -16.09169 -15.53419 -15.24888 -14.85462 -14.67442 -14.30900 -13.73191 -13.56147 -13.42146 -13.34702 -12.93025 -12.67631 -12.53695 -12.20435 -12.14169 -11.83157 -11.55147 -11.39258 -10.94957 -10.83534 -10.59940 -10.51076 -10.31005 -10.27729 -10.21330 -9.92048 -9.87501 -9.67466 -8.60889 -8.60754 -8.34061 -6.84199 -5.79145 -3.27730 1.76017 2.79243 2.83701 2.91460 3.23966 3.35093 3.41442 3.42811 4.34592 4.43607 4.52680 4.74371 4.81817 4.92119 4.97312 5.14736 5.23361 5.28490 5.31161 5.38952 5.48570 5.52245 5.57788 5.77977 5.85055 5.86027 5.97036 6.06392 6.30894 6.34033 6.48724 6.50243 6.63332 6.78295 6.83396 7.08829 7.28998 7.68054 7.74710 7.78456 7.80328 8.30883 8.35885 9.15024 9.77651 10.26837 11.24925 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.044802 B = 0.002670 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.817793 B =10485.513077 C =10624.502080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.612 5.612 16 C 0.521 3.479 17 O -0.547 6.547 18 C -0.129 4.129 19 C -0.029 4.029 20 C -0.017 4.017 21 C -0.024 4.024 22 N -0.495 5.495 23 C 0.178 3.822 24 N -0.568 5.568 25 H 0.419 0.581 26 C 0.087 3.913 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.003 0.997 30 H 0.254 0.746 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.170 0.830 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -20.720 -3.179 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.310 3.690 17 O -0.426 6.426 18 C -0.170 4.170 19 C -0.068 4.068 20 C -0.133 4.133 21 C -0.172 4.172 22 N -0.214 5.214 23 C -0.105 4.105 24 N -0.171 5.171 25 H 0.257 0.743 26 C -0.038 4.038 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.187 0.813 40 H 0.223 0.777 41 H 0.078 0.922 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.485 -21.065 -2.929 21.551 hybrid contribution 1.288 1.474 0.507 2.023 sum 4.773 -19.590 -2.422 20.308 Atomic orbital electron populations 1.20795 0.82488 0.95607 0.99675 1.43920 1.01860 0.99911 1.84859 1.19209 0.98876 0.85236 1.35955 0.91193 1.25075 0.98002 0.98718 0.97595 1.70072 1.20350 1.27512 1.36645 0.86224 0.78713 0.83924 0.77456 1.21406 1.21718 1.20421 1.21356 0.96356 0.85934 0.90142 0.90395 1.23374 1.02852 0.93025 1.00170 1.22329 0.99351 0.99170 0.81434 1.48597 1.65623 1.08037 1.12380 1.20220 0.77226 0.85382 0.86219 1.90709 1.48965 1.86070 1.16821 1.21621 1.03747 0.91756 0.99848 1.19777 1.04623 0.85958 0.96464 1.21362 0.90813 0.94191 1.06939 1.22158 1.00104 0.92551 1.02381 1.70285 1.11049 1.16545 1.23488 1.24963 0.94098 0.93529 0.97949 1.43335 1.16718 1.14285 1.42791 0.74332 1.22886 1.02516 0.79214 0.99159 0.94866 0.93968 0.97903 0.93559 0.90496 0.90418 0.91300 0.91698 0.88513 0.89411 0.90351 0.88462 0.81298 0.77695 0.92245 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 7.58 59.85 0.45 4.25 16 2 N -0.59 -14.03 2.93 -171.39 -0.50 -14.53 16 3 C -0.26 -6.97 9.59 -15.05 -0.14 -7.12 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 5 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 6 N -0.90 -25.92 10.80 55.49 0.60 -25.32 16 7 Si 0.91 21.36 29.58 -169.99 -5.03 16.33 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.17 3.31 3.43 -66.10 -0.23 3.08 16 12 H 0.08 1.48 7.95 -51.92 -0.41 1.06 16 13 C -0.15 -2.32 6.60 -24.58 -0.16 -2.49 16 14 C 0.10 1.23 6.69 -2.53 -0.02 1.22 16 15 N -0.61 -9.43 3.33 -170.53 -0.57 -10.00 16 16 C 0.52 7.79 7.85 -10.99 -0.09 7.70 16 17 O -0.55 -10.32 16.31 5.55 0.09 -10.23 16 18 C -0.13 -1.30 4.69 -27.89 -0.13 -1.43 16 19 C -0.03 -0.28 5.06 -27.88 -0.14 -0.42 16 20 C -0.02 -0.16 6.49 -81.60 -0.53 -0.69 16 21 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 22 N -0.49 -5.63 11.25 -14.67 -0.16 -5.80 16 23 C 0.18 1.41 13.04 -90.37 -1.18 0.23 16 24 N -0.57 -4.01 6.15 -10.30 -0.06 -4.07 16 25 H 0.42 1.70 8.96 -40.82 -0.37 1.33 16 26 C 0.09 1.64 6.50 -3.06 -0.02 1.62 16 27 H 0.03 0.88 7.24 -51.93 -0.38 0.50 16 28 H 0.04 1.08 7.40 -51.92 -0.38 0.70 16 29 H 0.00 0.05 6.36 -51.93 -0.33 -0.28 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.08 1.25 6.36 -51.93 -0.33 0.92 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.69 7.47 -51.93 -0.39 0.30 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.88 7.85 -51.93 -0.41 0.47 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.61 6.90 -51.93 -0.36 1.25 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -33.71 343.62 -9.22 -42.93 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.28 Total: -0.05 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.48 Total: 5.55 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.70 Total: -59.72 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.71 -9.22 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971652335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.107 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds