Wall clock time and date at job start Fri Apr 10 2020 14:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36948 * 119.99883 * 2 1 4 4 H 1.07993 * 119.99592 * 203.34925 * 3 2 1 5 5 C 1.38811 * 119.99834 * 23.34497 * 3 2 1 6 6 N 1.31616 * 120.00357 * 14.28120 * 5 3 2 7 7 Si 1.86801 * 119.99729 * 194.27590 * 5 3 2 8 8 H 1.48501 * 109.46977 * 90.00618 * 7 5 3 9 9 H 1.48505 * 109.46846 * 210.00069 * 7 5 3 10 10 H 1.48493 * 109.46997 * 330.00208 * 7 5 3 11 11 C 1.46494 * 120.00057 * 179.97438 * 2 1 3 12 12 H 1.09008 * 110.78119 * 181.78825 * 11 2 1 13 13 C 1.55157 * 110.71814 * 58.55059 * 11 2 1 14 14 C 1.54916 * 101.58068 * 206.13282 * 13 11 2 15 15 N 1.47421 * 104.83188 * 37.00822 * 14 13 11 16 16 C 1.34777 * 125.64959 * 155.82377 * 15 14 13 17 17 O 1.21284 * 120.00016 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99931 * 0.02620 * 16 15 14 19 19 C 1.52996 * 109.47175 * 179.97438 * 18 16 15 20 20 C 1.50705 * 109.47119 * 179.97438 * 19 18 16 21 21 C 1.34662 * 126.59132 * 274.69109 * 20 19 18 22 22 N 1.34130 * 108.02076 * 179.87609 * 21 20 19 23 23 C 1.30498 * 109.25632 * 0.39608 * 22 21 20 24 24 N 1.35047 * 108.69712 * 359.75846 * 23 22 21 25 25 H 0.97005 * 126.39832 * 180.02562 * 24 23 22 26 26 C 1.47026 * 108.70399 * 335.87218 * 15 14 13 27 27 H 1.08998 * 109.47300 * 275.18273 * 1 2 3 28 28 H 1.09009 * 109.47183 * 35.18297 * 1 2 3 29 29 H 1.08995 * 109.46863 * 155.17961 * 1 2 3 30 30 H 0.97001 * 120.00681 * 179.97438 * 6 5 3 31 31 H 1.08996 * 111.00444 * 324.20831 * 13 11 2 32 32 H 1.09006 * 111.00356 * 88.06319 * 13 11 2 33 33 H 1.08997 * 110.36724 * 155.85000 * 14 13 11 34 34 H 1.08994 * 110.36578 * 278.06370 * 14 13 11 35 35 H 1.09003 * 109.47076 * 300.00092 * 18 16 15 36 36 H 1.09005 * 109.46888 * 59.99891 * 18 16 15 37 37 H 1.08990 * 109.47792 * 300.00168 * 19 18 16 38 38 H 1.09005 * 109.46998 * 60.00330 * 19 18 16 39 39 H 1.08005 * 125.99382 * 0.02562 * 21 20 19 40 40 H 1.07997 * 125.65159 * 179.73413 * 23 22 21 41 41 H 1.08998 * 109.88441 * 241.63969 * 26 15 14 42 42 H 1.08995 * 109.88340 * 120.47479 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1633 1.2243 -0.3707 5 6 1.5408 2.3389 0.4764 6 7 0.4312 2.2549 1.1792 7 14 2.2964 4.0097 0.1200 8 1 1.7441 4.5416 -1.1517 9 1 1.9755 4.9446 1.2283 10 1 3.7700 3.8711 0.0002 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0943 0.0323 13 6 1.8162 -2.1232 -1.2371 14 6 2.1009 -3.5571 -0.7246 15 7 1.6925 -3.5397 0.6918 16 6 1.3237 -4.6147 1.4162 17 8 1.0054 -4.4822 2.5790 18 6 1.3069 -5.9814 0.7814 19 6 0.8553 -7.0172 1.8129 20 6 0.8379 -8.3839 1.1778 21 6 -0.1689 -8.9256 0.4663 22 7 0.2115 -10.1511 0.0757 23 6 1.4125 -10.3926 0.5254 24 7 1.8400 -9.3154 1.2186 25 1 2.6973 -9.2194 1.6622 26 6 1.7531 -2.1553 1.1829 27 1 -0.3634 0.0928 1.0234 28 1 -0.3634 0.8400 -0.5922 29 1 -0.3633 -0.9327 -0.4314 30 1 0.0059 3.0605 1.5125 31 1 0.7626 -1.9998 -1.4875 32 1 2.4500 -1.8801 -2.0900 33 1 1.5088 -4.2835 -1.2813 34 1 3.1626 -3.7874 -0.8122 35 1 0.6156 -5.9820 -0.0614 36 1 2.3081 -6.2312 0.4303 37 1 1.5468 -7.0165 2.6554 38 1 -0.1459 -6.7675 2.1643 39 1 -1.1157 -8.4548 0.2463 40 1 1.9718 -11.3033 0.3694 41 1 2.4769 -2.0811 1.9945 42 1 0.7689 -1.8422 1.5315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971652335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:44 Heat of formation + Delta-G solvation = 24.351543 kcal Electronic energy + Delta-G solvation = -22990.133191 eV Core-core repulsion = 19584.900032 eV Total energy + Delta-G solvation = -3405.233158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.92466 -41.07645 -38.98180 -36.53564 -34.93981 -33.49027 -33.17732 -31.33171 -30.16161 -29.01957 -28.07463 -26.02435 -24.49294 -23.66617 -22.41581 -21.64530 -20.88411 -20.10454 -18.97420 -18.86178 -17.85426 -17.49877 -16.75823 -16.57153 -16.01879 -15.64038 -15.38212 -15.09394 -14.95722 -14.53895 -14.35662 -14.30953 -13.90752 -13.84948 -13.51894 -13.28094 -13.14054 -13.00231 -12.76422 -12.51482 -12.40083 -12.25014 -12.16870 -12.09268 -11.80885 -11.42495 -11.00384 -10.90780 -10.87629 -10.64630 -9.63804 -9.30037 -8.81952 -7.84397 -5.35404 1.11079 1.47795 1.48610 1.57650 1.63058 1.98642 2.24669 2.34337 2.51205 3.27291 3.47019 3.59054 3.85257 3.89991 3.99705 4.01008 4.10375 4.28654 4.31932 4.37668 4.48218 4.52396 4.57670 4.67344 4.73849 4.79222 4.81598 4.91288 5.04469 5.08531 5.19205 5.25283 5.30758 5.36835 5.44512 5.64170 5.67428 5.80782 6.30445 6.60344 6.60647 7.10892 7.15809 7.17230 7.82665 8.27808 9.18329 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.044802 B = 0.002670 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.817793 B =10485.513077 C =10624.502080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.266 4.266 4 H 0.079 0.921 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.285 1.285 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.164 3.836 12 H 0.082 0.918 13 C -0.142 4.142 14 C 0.106 3.894 15 N -0.614 5.614 16 C 0.517 3.483 17 O -0.595 6.595 18 C -0.113 4.113 19 C -0.021 4.021 20 C -0.017 4.017 21 C -0.046 4.046 22 N -0.540 5.540 23 C 0.190 3.810 24 N -0.557 5.557 25 H 0.434 0.566 26 C 0.098 3.902 27 H -0.003 1.003 28 H 0.017 0.983 29 H 0.031 0.969 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.170 0.830 40 H 0.244 0.756 41 H 0.042 0.958 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -23.006 -5.139 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.396 4.396 4 H 0.097 0.903 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.212 1.212 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.056 3.944 12 H 0.100 0.900 13 C -0.182 4.182 14 C -0.016 4.016 15 N -0.348 5.348 16 C 0.307 3.693 17 O -0.476 6.476 18 C -0.153 4.153 19 C -0.061 4.061 20 C -0.133 4.133 21 C -0.193 4.193 22 N -0.259 5.259 23 C -0.094 4.094 24 N -0.162 5.162 25 H 0.275 0.725 26 C -0.028 4.028 27 H 0.015 0.985 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.187 0.813 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.710 -23.397 -4.924 24.582 hybrid contribution 0.652 2.068 1.143 2.451 sum 6.361 -21.329 -3.781 22.577 Atomic orbital electron populations 1.20436 0.83077 0.95865 0.97200 1.44117 1.01857 1.01176 1.85163 1.19617 0.99148 0.86302 1.34495 0.90305 1.25886 0.98776 1.02246 0.98080 1.70257 1.22065 1.27778 1.38472 0.85194 0.78592 0.79516 0.76689 1.21173 1.22669 1.18880 1.21579 0.96057 0.84573 0.92220 0.90009 1.23243 1.02501 0.93817 0.98626 1.22554 1.01833 0.97951 0.79239 1.48675 1.65772 1.06451 1.13860 1.21162 0.75663 0.86757 0.85682 1.90693 1.50845 1.86895 1.19207 1.21601 1.05867 0.88031 0.99782 1.19622 1.03780 0.86278 0.96374 1.21119 0.91206 0.94157 1.06838 1.22334 1.00781 0.92925 1.03248 1.70270 1.13042 1.17178 1.25456 1.25696 0.93262 0.94329 0.96087 1.43303 1.16978 1.13540 1.42364 0.72483 1.22417 0.99713 0.81965 0.98706 0.98488 0.96457 0.95024 0.94307 0.91671 0.88281 0.87727 0.88710 0.86698 0.86547 0.90589 0.89920 0.81266 0.74009 0.93975 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.88 7.58 127.77 0.97 9.85 16 2 N -0.60 -29.19 2.93 -696.16 -2.04 -31.23 16 3 C -0.27 -14.14 9.59 84.03 0.81 -13.33 16 4 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 5 C -0.05 -3.03 5.07 84.86 0.43 -2.60 16 6 N -0.94 -56.16 10.80 21.65 0.23 -55.92 16 7 Si 0.97 44.49 29.58 68.60 2.03 46.52 16 8 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 11 C 0.16 6.16 3.43 46.18 0.16 6.32 16 12 H 0.08 2.99 7.95 -2.38 -0.02 2.97 16 13 C -0.14 -3.87 6.60 31.99 0.21 -3.66 16 14 C 0.11 2.14 6.69 86.86 0.58 2.72 16 15 N -0.61 -17.80 3.33 -811.81 -2.70 -20.50 16 16 C 0.52 14.67 7.85 87.66 0.69 15.36 16 17 O -0.60 -22.68 16.31 -3.04 -0.05 -22.73 16 18 C -0.11 -1.91 4.69 29.85 0.14 -1.77 16 19 C -0.02 -0.37 5.06 29.85 0.15 -0.22 16 20 C -0.02 -0.27 6.49 40.95 0.27 0.00 16 21 C -0.05 -0.91 11.79 83.52 0.98 0.08 16 22 N -0.54 -11.30 11.25 -200.31 -2.25 -13.55 16 23 C 0.19 2.43 13.04 180.26 2.35 4.78 16 24 N -0.56 -6.13 6.15 -186.49 -1.15 -7.28 16 25 H 0.43 1.99 8.96 -92.70 -0.83 1.16 16 26 C 0.10 3.76 6.50 86.73 0.56 4.32 16 27 H 0.00 -0.18 7.24 -2.39 -0.02 -0.20 16 28 H 0.02 0.90 7.40 -2.38 -0.02 0.88 16 29 H 0.03 1.34 6.36 -2.39 -0.02 1.33 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.06 1.95 6.36 -2.39 -0.02 1.94 16 32 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.10 1.48 7.47 -2.39 -0.02 1.46 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.62 7.85 -2.39 -0.02 1.60 16 36 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.08 1.69 8.10 -2.38 -0.02 1.68 16 39 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.24 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.03 1.60 6.90 -2.39 -0.02 1.58 16 Total: -1.00 -77.42 343.62 2.57 -74.85 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.20 Total: 8.01 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 8.30 Total: 21.84 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -7.91 Total: -128.48 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -77.42 2.57 -74.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971652335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.205 kcal (2) G-P(sol) polarization free energy of solvation -77.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds