Wall clock time and date at job start Fri Apr 10 2020 14:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00105 * 2 1 4 4 H 1.07999 * 119.99748 * 161.16094 * 3 2 1 5 5 C 1.38808 * 119.99997 * 340.89265 * 3 2 1 6 6 N 1.31612 * 120.00099 * 346.74019 * 5 3 2 7 7 Si 1.86801 * 119.99632 * 166.74142 * 5 3 2 8 8 H 1.48496 * 109.47118 * 60.00288 * 7 5 3 9 9 H 1.48500 * 109.46895 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47384 * 299.99938 * 7 5 3 11 11 C 1.46501 * 119.99665 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64132 * 183.14001 * 11 2 1 13 13 C 1.55155 * 110.72221 * 306.47856 * 11 2 1 14 14 C 1.54909 * 101.58381 * 153.86313 * 13 11 2 15 15 N 1.47419 * 104.83100 * 322.99336 * 14 13 11 16 16 C 1.34788 * 125.64803 * 204.09353 * 15 14 13 17 17 O 1.21272 * 120.00013 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99622 * 0.03394 * 16 15 14 19 19 C 1.52994 * 109.47051 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47452 * 180.02562 * 19 18 16 21 21 C 1.34673 * 126.59214 * 85.02515 * 20 19 18 22 22 N 1.34129 * 108.02099 * 179.97438 * 21 20 19 23 23 C 1.30498 * 109.25593 * 359.97438 * 22 21 20 24 24 N 1.35043 * 108.70287 * 359.76686 * 23 22 21 25 25 H 0.96995 * 126.40026 * 180.26772 * 24 23 22 26 26 C 1.47017 * 108.70699 * 24.12497 * 15 14 13 27 27 H 1.08997 * 109.47363 * 84.80529 * 1 2 3 28 28 H 1.08992 * 109.47199 * 204.81175 * 1 2 3 29 29 H 1.09008 * 109.46866 * 324.81194 * 1 2 3 30 30 H 0.97007 * 119.99884 * 180.02562 * 6 5 3 31 31 H 1.09001 * 111.00308 * 271.94206 * 13 11 2 32 32 H 1.09003 * 111.00228 * 35.78754 * 13 11 2 33 33 H 1.08997 * 110.36865 * 204.15209 * 14 13 11 34 34 H 1.09004 * 110.45433 * 81.87157 * 14 13 11 35 35 H 1.09002 * 109.47602 * 300.00609 * 18 16 15 36 36 H 1.09003 * 109.46910 * 60.00950 * 18 16 15 37 37 H 1.09002 * 109.47303 * 300.00655 * 19 18 16 38 38 H 1.09004 * 109.47014 * 59.99972 * 19 18 16 39 39 H 1.07998 * 125.98583 * 359.96304 * 21 20 19 40 40 H 1.07995 * 125.64729 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.88416 * 239.52253 * 26 15 14 42 42 H 1.09008 * 110.01561 * 118.43266 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2109 0.3020 5 6 1.5131 2.3549 -0.3935 6 7 0.3510 2.2964 -1.0087 7 14 2.3057 4.0111 -0.0499 8 1 3.6266 4.0773 -0.7251 9 1 1.4316 5.0948 -0.5664 10 1 2.4892 4.1779 1.4141 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0924 0.0554 13 6 1.7247 -2.1761 1.1659 14 6 2.0497 -3.5867 0.6141 15 7 1.7499 -3.5064 -0.8270 16 6 1.4403 -4.5482 -1.6242 17 8 1.2117 -4.3644 -2.8009 18 6 1.3780 -5.9414 -1.0531 19 6 1.0094 -6.9306 -2.1606 20 6 0.9465 -8.3237 -1.5894 21 6 -0.1090 -8.8933 -0.9770 22 7 0.2415 -10.1371 -0.6174 23 6 1.4738 -10.3600 -0.9842 24 7 1.9490 -9.2557 -1.5994 25 1 2.8357 -9.1432 -1.9761 26 6 1.8454 -2.1019 -1.2510 27 1 -0.3634 0.0930 -1.0234 28 1 -0.3633 -0.9327 0.4312 29 1 -0.3633 0.8399 0.5923 30 1 -0.0937 3.1133 -1.2840 31 1 2.2915 -1.9717 2.0742 32 1 0.6549 -2.0619 1.3408 33 1 1.4182 -4.3356 1.0919 34 1 3.1022 -3.8235 0.7700 35 1 2.3499 -6.2076 -0.6374 36 1 0.6240 -5.9784 -0.2668 37 1 0.0377 -6.6646 -2.5766 38 1 1.7636 -6.8935 -2.9467 39 1 -1.0692 -8.4298 -0.8053 40 1 2.0215 -11.2773 -0.8261 41 1 0.8900 -1.7722 -1.6593 42 1 2.6274 -1.9913 -2.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971652336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:47 Heat of formation + Delta-G solvation = 48.745761 kcal Electronic energy + Delta-G solvation = -22990.060463 eV Core-core repulsion = 19585.885118 eV Total energy + Delta-G solvation = -3404.175346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27642 -39.81733 -37.56858 -34.83145 -34.08421 -32.56184 -31.68327 -29.82631 -29.18197 -27.76369 -26.08662 -24.89058 -22.99941 -22.38231 -21.77718 -20.96161 -19.29059 -18.94706 -18.17750 -17.09124 -16.75012 -16.10315 -15.53356 -15.26078 -14.85431 -14.67466 -14.31276 -13.73001 -13.56630 -13.40890 -13.35771 -12.92277 -12.67414 -12.53074 -12.17409 -12.14512 -11.86687 -11.54759 -11.39152 -10.93298 -10.82894 -10.59797 -10.44736 -10.32381 -10.27335 -10.21732 -9.92918 -9.83934 -9.67500 -8.60739 -8.59479 -8.33815 -6.89107 -5.78042 -3.23030 1.75992 2.79418 2.83583 2.91646 3.24224 3.36030 3.41755 3.42484 4.34666 4.44073 4.52743 4.74370 4.81880 4.92140 4.96645 5.14755 5.23170 5.28711 5.31338 5.38987 5.48514 5.52268 5.58165 5.77339 5.85062 5.85935 5.95967 6.06390 6.30036 6.33380 6.48624 6.49993 6.63828 6.80296 6.83227 7.08861 7.35787 7.67754 7.77030 7.78669 7.80346 8.29975 8.35822 9.16196 9.78901 10.26057 11.26509 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.044385 B = 0.002669 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.693021 B =10489.287418 C =10598.709923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.612 5.612 16 C 0.521 3.479 17 O -0.547 6.547 18 C -0.129 4.129 19 C -0.029 4.029 20 C -0.017 4.017 21 C -0.024 4.024 22 N -0.495 5.495 23 C 0.178 3.822 24 N -0.568 5.568 25 H 0.419 0.581 26 C 0.085 3.915 27 H 0.029 0.971 28 H 0.001 0.999 29 H 0.048 0.952 30 H 0.254 0.746 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.170 0.830 40 H 0.207 0.793 41 H 0.072 0.928 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -20.830 2.531 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.346 5.346 16 C 0.309 3.691 17 O -0.426 6.426 18 C -0.170 4.170 19 C -0.068 4.068 20 C -0.133 4.133 21 C -0.172 4.172 22 N -0.214 5.214 23 C -0.105 4.105 24 N -0.171 5.171 25 H 0.257 0.743 26 C -0.039 4.039 27 H 0.048 0.952 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.187 0.813 40 H 0.223 0.777 41 H 0.091 0.909 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.606 -21.156 2.217 21.576 hybrid contribution 1.374 1.484 -0.444 2.070 sum 4.980 -19.673 1.773 20.370 Atomic orbital electron populations 1.20833 0.82211 0.95675 0.99602 1.43959 1.02033 0.99890 1.84861 1.19208 0.96306 0.84600 1.38935 0.91075 1.24995 0.97555 0.98492 0.98563 1.70089 1.16799 1.26912 1.41261 0.86279 0.78404 0.83473 0.78029 1.20927 1.21608 1.21025 1.21335 0.96318 0.85961 0.90152 0.90428 1.23352 1.02926 0.93177 0.99943 1.22327 1.00014 0.99194 0.80705 1.48597 1.67991 1.08046 1.09996 1.20224 0.76980 0.85842 0.86008 1.90706 1.50162 1.85514 1.16187 1.21621 1.03985 0.91684 0.99683 1.19775 1.04828 0.85751 0.96469 1.21365 0.90234 0.93863 1.07848 1.22159 0.99495 0.91818 1.03714 1.70286 1.11521 1.16965 1.22592 1.24961 0.92833 0.92831 0.99915 1.43334 1.14770 1.13012 1.46013 0.74335 1.22943 1.02302 0.78714 0.99974 0.95249 0.98045 0.93296 0.93544 0.90375 0.90280 0.91276 0.91705 0.89409 0.88508 0.88467 0.90360 0.81296 0.77698 0.90914 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.79 59.85 0.47 4.33 16 2 N -0.59 -14.08 2.94 -171.39 -0.50 -14.59 16 3 C -0.26 -6.92 9.67 -15.06 -0.15 -7.07 16 4 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.91 -26.03 10.49 55.49 0.58 -25.45 16 7 Si 0.91 21.41 29.57 -169.99 -5.03 16.38 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.17 3.31 3.45 -66.09 -0.23 3.08 16 12 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 13 C -0.15 -2.32 6.59 -24.58 -0.16 -2.48 16 14 C 0.10 1.23 6.69 -2.53 -0.02 1.22 16 15 N -0.61 -9.43 3.33 -170.52 -0.57 -10.00 16 16 C 0.52 7.80 7.85 -10.98 -0.09 7.71 16 17 O -0.55 -10.34 16.31 5.56 0.09 -10.25 16 18 C -0.13 -1.30 4.69 -27.89 -0.13 -1.43 16 19 C -0.03 -0.28 5.06 -27.89 -0.14 -0.42 16 20 C -0.02 -0.16 6.49 -81.60 -0.53 -0.69 16 21 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 22 N -0.49 -5.63 11.25 -14.67 -0.17 -5.80 16 23 C 0.18 1.41 13.04 -90.38 -1.18 0.23 16 24 N -0.57 -4.01 6.15 -10.30 -0.06 -4.07 16 25 H 0.42 1.70 8.96 -40.82 -0.37 1.33 16 26 C 0.09 1.62 6.51 -3.07 -0.02 1.60 16 27 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 28 H 0.00 0.02 6.03 -51.93 -0.31 -0.29 16 29 H 0.05 1.27 7.08 -51.92 -0.37 0.90 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.28 6.05 -51.93 -0.31 0.97 16 33 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.88 7.85 -51.93 -0.41 0.47 16 37 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.07 1.60 7.13 -51.93 -0.37 1.23 16 42 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -33.74 342.94 -9.20 -42.94 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.24 Total: 0.07 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.47 Total: 5.59 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.72 Total: -59.90 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.74 -9.20 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971652336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.684 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds