Wall clock time and date at job start Fri Apr 10 2020 14:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00105 * 2 1 4 4 H 1.07999 * 119.99748 * 161.16094 * 3 2 1 5 5 C 1.38808 * 119.99997 * 340.89265 * 3 2 1 6 6 N 1.31612 * 120.00099 * 346.74019 * 5 3 2 7 7 Si 1.86801 * 119.99632 * 166.74142 * 5 3 2 8 8 H 1.48496 * 109.47118 * 60.00288 * 7 5 3 9 9 H 1.48500 * 109.46895 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47384 * 299.99938 * 7 5 3 11 11 C 1.46501 * 119.99665 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64132 * 183.14001 * 11 2 1 13 13 C 1.55155 * 110.72221 * 306.47856 * 11 2 1 14 14 C 1.54909 * 101.58381 * 153.86313 * 13 11 2 15 15 N 1.47419 * 104.83100 * 322.99336 * 14 13 11 16 16 C 1.34788 * 125.64803 * 204.09353 * 15 14 13 17 17 O 1.21272 * 120.00013 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99622 * 0.03394 * 16 15 14 19 19 C 1.52994 * 109.47051 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47452 * 180.02562 * 19 18 16 21 21 C 1.34673 * 126.59214 * 85.02515 * 20 19 18 22 22 N 1.34129 * 108.02099 * 179.97438 * 21 20 19 23 23 C 1.30498 * 109.25593 * 359.97438 * 22 21 20 24 24 N 1.35043 * 108.70287 * 359.76686 * 23 22 21 25 25 H 0.96995 * 126.40026 * 180.26772 * 24 23 22 26 26 C 1.47017 * 108.70699 * 24.12497 * 15 14 13 27 27 H 1.08997 * 109.47363 * 84.80529 * 1 2 3 28 28 H 1.08992 * 109.47199 * 204.81175 * 1 2 3 29 29 H 1.09008 * 109.46866 * 324.81194 * 1 2 3 30 30 H 0.97007 * 119.99884 * 180.02562 * 6 5 3 31 31 H 1.09001 * 111.00308 * 271.94206 * 13 11 2 32 32 H 1.09003 * 111.00228 * 35.78754 * 13 11 2 33 33 H 1.08997 * 110.36865 * 204.15209 * 14 13 11 34 34 H 1.09004 * 110.45433 * 81.87157 * 14 13 11 35 35 H 1.09002 * 109.47602 * 300.00609 * 18 16 15 36 36 H 1.09003 * 109.46910 * 60.00950 * 18 16 15 37 37 H 1.09002 * 109.47303 * 300.00655 * 19 18 16 38 38 H 1.09004 * 109.47014 * 59.99972 * 19 18 16 39 39 H 1.07998 * 125.98583 * 359.96304 * 21 20 19 40 40 H 1.07995 * 125.64729 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.88416 * 239.52253 * 26 15 14 42 42 H 1.09008 * 110.01561 * 118.43266 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2109 0.3020 5 6 1.5131 2.3549 -0.3935 6 7 0.3510 2.2964 -1.0087 7 14 2.3057 4.0111 -0.0499 8 1 3.6266 4.0773 -0.7251 9 1 1.4316 5.0948 -0.5664 10 1 2.4892 4.1779 1.4141 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0924 0.0554 13 6 1.7247 -2.1761 1.1659 14 6 2.0497 -3.5867 0.6141 15 7 1.7499 -3.5064 -0.8270 16 6 1.4403 -4.5482 -1.6242 17 8 1.2117 -4.3644 -2.8009 18 6 1.3780 -5.9414 -1.0531 19 6 1.0094 -6.9306 -2.1606 20 6 0.9465 -8.3237 -1.5894 21 6 -0.1090 -8.8933 -0.9770 22 7 0.2415 -10.1371 -0.6174 23 6 1.4738 -10.3600 -0.9842 24 7 1.9490 -9.2557 -1.5994 25 1 2.8357 -9.1432 -1.9761 26 6 1.8454 -2.1019 -1.2510 27 1 -0.3634 0.0930 -1.0234 28 1 -0.3633 -0.9327 0.4312 29 1 -0.3633 0.8399 0.5923 30 1 -0.0937 3.1133 -1.2840 31 1 2.2915 -1.9717 2.0742 32 1 0.6549 -2.0619 1.3408 33 1 1.4182 -4.3356 1.0919 34 1 3.1022 -3.8235 0.7700 35 1 2.3499 -6.2076 -0.6374 36 1 0.6240 -5.9784 -0.2668 37 1 0.0377 -6.6646 -2.5766 38 1 1.7636 -6.8935 -2.9467 39 1 -1.0692 -8.4298 -0.8053 40 1 2.0215 -11.2773 -0.8261 41 1 0.8900 -1.7722 -1.6593 42 1 2.6274 -1.9913 -2.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971652336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:46 Heat of formation + Delta-G solvation = 26.868220 kcal Electronic energy + Delta-G solvation = -22991.009145 eV Core-core repulsion = 19585.885118 eV Total energy + Delta-G solvation = -3405.124027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.92436 -41.07601 -38.99012 -36.55316 -34.94117 -33.48887 -33.17806 -31.29952 -30.16612 -29.02597 -28.08393 -26.01375 -24.47615 -23.68791 -22.41691 -21.64334 -20.87248 -20.10321 -18.97709 -18.86604 -17.85671 -17.50579 -16.76279 -16.57152 -16.02000 -15.63727 -15.38750 -15.08477 -14.96531 -14.54205 -14.35391 -14.30163 -13.88875 -13.84412 -13.52189 -13.29418 -13.15976 -13.00359 -12.71245 -12.51429 -12.38853 -12.23082 -12.16004 -12.11785 -11.79116 -11.41068 -10.99994 -10.91454 -10.87581 -10.62692 -9.63622 -9.30057 -8.86844 -7.83763 -5.30782 1.10990 1.47845 1.50020 1.56765 1.63080 1.98807 2.24731 2.34264 2.51714 3.28275 3.47292 3.58814 3.84920 3.89913 3.99861 4.00962 4.10413 4.28321 4.31854 4.37611 4.47350 4.52264 4.57645 4.67280 4.73934 4.79915 4.81714 4.91225 5.05309 5.08440 5.21662 5.25384 5.33379 5.36760 5.44751 5.62443 5.71594 5.80729 6.28967 6.60469 6.60657 7.11485 7.15867 7.17236 7.83924 8.26997 9.19524 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.044385 B = 0.002669 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.693021 B =10489.287418 C =10598.709923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.604 5.604 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.973 3.027 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.274 1.274 11 C 0.165 3.835 12 H 0.083 0.917 13 C -0.143 4.143 14 C 0.106 3.894 15 N -0.614 5.614 16 C 0.516 3.484 17 O -0.595 6.595 18 C -0.113 4.113 19 C -0.021 4.021 20 C -0.017 4.017 21 C -0.046 4.046 22 N -0.540 5.540 23 C 0.190 3.810 24 N -0.557 5.557 25 H 0.434 0.566 26 C 0.097 3.903 27 H -0.008 1.008 28 H 0.032 0.968 29 H 0.022 0.978 30 H 0.247 0.753 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.170 0.830 40 H 0.244 0.756 41 H 0.032 0.968 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -23.197 4.459 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.325 5.325 3 C -0.394 4.394 4 H 0.099 0.901 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.801 3.199 8 H -0.201 1.201 9 H -0.225 1.225 10 H -0.200 1.200 11 C 0.056 3.944 12 H 0.101 0.899 13 C -0.182 4.182 14 C -0.015 4.015 15 N -0.348 5.348 16 C 0.307 3.693 17 O -0.477 6.477 18 C -0.153 4.153 19 C -0.061 4.061 20 C -0.133 4.133 21 C -0.193 4.193 22 N -0.259 5.259 23 C -0.094 4.094 24 N -0.162 5.162 25 H 0.275 0.725 26 C -0.029 4.029 27 H 0.011 0.989 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.187 0.813 40 H 0.260 0.740 41 H 0.050 0.950 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.781 -23.570 4.179 24.626 hybrid contribution 0.757 2.102 -1.074 2.479 sum 6.538 -21.468 3.105 22.656 Atomic orbital electron populations 1.20469 0.82828 0.95982 0.97067 1.44160 1.02025 1.01172 1.85139 1.19637 0.96723 0.85678 1.37402 0.90121 1.25814 0.98333 1.01972 0.99138 1.70284 1.18445 1.27072 1.43131 0.85245 0.77411 0.79087 0.78112 1.20139 1.22550 1.20024 1.21575 0.96250 0.84692 0.91894 0.89884 1.23232 1.02307 0.93711 0.98948 1.22557 1.02675 0.98101 0.78208 1.48678 1.68053 1.06383 1.11649 1.21169 0.75406 0.87329 0.85381 1.90689 1.52051 1.86383 1.18546 1.21601 1.06111 0.87795 0.99769 1.19619 1.04000 0.86090 0.96348 1.21119 0.90582 0.93781 1.07840 1.22334 1.00181 0.92181 1.04586 1.70270 1.13540 1.17551 1.24584 1.25695 0.92044 0.93722 0.97905 1.43302 1.15128 1.12284 1.45467 0.72484 1.22467 0.99459 0.81540 0.99455 0.98944 0.95002 0.95915 0.94361 0.88175 0.91507 0.87717 0.88661 0.86520 0.86701 0.89952 0.90588 0.81273 0.74006 0.94981 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.79 127.77 1.00 10.01 16 2 N -0.60 -29.32 2.94 -696.15 -2.04 -31.36 16 3 C -0.26 -14.11 9.67 84.03 0.81 -13.30 16 4 H 0.08 4.06 7.80 -2.91 -0.02 4.04 16 5 C -0.06 -3.22 5.11 84.86 0.43 -2.79 16 6 N -0.94 -56.33 10.49 21.65 0.23 -56.11 16 7 Si 0.97 44.61 29.57 68.60 2.03 46.64 16 8 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 C 0.16 6.15 3.45 46.18 0.16 6.31 16 12 H 0.08 3.00 7.90 -2.39 -0.02 2.98 16 13 C -0.14 -3.86 6.59 31.99 0.21 -3.65 16 14 C 0.11 2.14 6.69 86.86 0.58 2.72 16 15 N -0.61 -17.81 3.33 -811.80 -2.70 -20.51 16 16 C 0.52 14.70 7.85 87.66 0.69 15.38 16 17 O -0.60 -22.74 16.31 -3.01 -0.05 -22.79 16 18 C -0.11 -1.91 4.69 29.85 0.14 -1.77 16 19 C -0.02 -0.37 5.06 29.84 0.15 -0.22 16 20 C -0.02 -0.27 6.49 40.95 0.27 -0.01 16 21 C -0.05 -0.91 11.79 83.52 0.98 0.08 16 22 N -0.54 -11.31 11.25 -200.31 -2.25 -13.56 16 23 C 0.19 2.43 13.04 180.26 2.35 4.78 16 24 N -0.56 -6.13 6.15 -186.50 -1.15 -7.28 16 25 H 0.43 1.98 8.96 -92.71 -0.83 1.15 16 26 C 0.10 3.72 6.51 86.73 0.56 4.28 16 27 H -0.01 -0.44 7.38 -2.39 -0.02 -0.46 16 28 H 0.03 1.35 6.03 -2.39 -0.01 1.33 16 29 H 0.02 1.21 7.08 -2.38 -0.02 1.19 16 30 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.00 6.05 -2.39 -0.01 1.98 16 33 H 0.10 1.48 7.48 -2.39 -0.02 1.46 16 34 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 1.62 7.85 -2.39 -0.02 1.60 16 37 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.08 1.37 8.10 -2.38 -0.02 1.35 16 39 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.24 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.03 1.48 7.13 -2.39 -0.02 1.47 16 42 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -77.66 342.94 2.60 -75.07 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.20 Total: 8.08 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 8.34 Total: 21.82 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -7.92 Total: -128.82 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.66 2.60 -75.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971652336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.934 kcal (2) G-P(sol) polarization free energy of solvation -77.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds