Wall clock time and date at job start Fri Apr 10 2020 14:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 120.00162 * 2 1 4 4 H 1.07996 * 120.00011 * 159.92849 * 3 2 1 5 5 C 1.38812 * 119.99581 * 339.65265 * 3 2 1 6 6 N 1.31621 * 120.00488 * 347.74179 * 5 3 2 7 7 Si 1.86808 * 119.99666 * 167.73889 * 5 3 2 8 8 H 1.48501 * 109.46810 * 60.00509 * 7 5 3 9 9 H 1.48505 * 109.46755 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47261 * 299.99956 * 7 5 3 11 11 C 1.46497 * 120.00088 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.88447 * 176.12137 * 11 2 1 13 13 C 1.55153 * 111.00260 * 52.19710 * 11 2 1 14 14 C 1.54325 * 102.94022 * 206.42321 * 13 11 2 15 15 N 1.47024 * 107.27346 * 22.19400 * 14 13 11 16 16 C 1.34772 * 125.65181 * 181.02438 * 15 14 13 17 17 O 1.21284 * 120.00647 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00121 * 0.04006 * 16 15 14 19 19 C 1.52994 * 109.47463 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47463 * 179.97438 * 19 18 16 21 21 C 1.39865 * 126.03875 * 90.01786 * 20 19 18 22 22 N 1.30842 * 108.20222 * 179.97438 * 21 20 19 23 23 N 1.40082 * 108.20521 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.04085 * 179.97438 * 23 22 21 25 25 C 1.34954 * 107.92229 * 359.76107 * 23 22 21 26 26 C 1.47422 * 108.70297 * 1.05789 * 15 14 13 27 27 H 1.08995 * 109.46870 * 84.85071 * 1 2 3 28 28 H 1.08999 * 109.47047 * 204.85411 * 1 2 3 29 29 H 1.09000 * 109.47242 * 324.85444 * 1 2 3 30 30 H 0.96992 * 120.00116 * 179.97438 * 6 5 3 31 31 H 1.08991 * 110.72408 * 324.78382 * 13 11 2 32 32 H 1.09002 * 110.72114 * 88.06879 * 13 11 2 33 33 H 1.08999 * 109.88893 * 262.77539 * 14 13 11 34 34 H 1.09006 * 110.01446 * 141.68107 * 14 13 11 35 35 H 1.09005 * 109.46817 * 300.00275 * 18 16 15 36 36 H 1.08999 * 109.47317 * 59.99524 * 18 16 15 37 37 H 1.09005 * 109.47070 * 299.99803 * 19 18 16 38 38 H 1.09005 * 109.47474 * 60.00036 * 19 18 16 39 39 H 1.08002 * 125.90112 * 359.96502 * 21 20 19 40 40 H 1.08006 * 126.12056 * 180.23580 * 25 23 22 41 41 H 1.08997 * 110.36915 * 217.03759 * 26 15 14 42 42 H 1.08996 * 110.46182 * 94.75518 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1805 1.2143 0.3210 5 6 1.5206 2.3505 -0.4180 6 7 0.3606 2.2864 -1.0368 7 14 2.3202 4.0090 -0.1023 8 1 3.6442 4.0559 -0.7732 9 1 1.4530 5.0873 -0.6416 10 1 2.4986 4.2024 1.3592 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 -0.0684 13 6 1.7067 -2.1947 -1.1435 14 6 2.0243 -3.6060 -0.6061 15 7 2.1176 -3.5050 0.8577 16 6 2.4011 -4.5194 1.6986 17 8 2.4517 -4.3202 2.8939 18 6 2.6554 -5.9012 1.1538 19 6 2.9506 -6.8590 2.3097 20 6 3.2044 -8.2410 1.7649 21 6 4.4456 -8.7594 1.3819 22 7 4.2647 -9.9855 0.9625 23 7 2.9005 -10.2866 1.0660 24 1 2.4817 -11.1274 0.8240 25 6 2.2726 -9.2018 1.5662 26 6 1.8489 -2.1106 1.2534 27 1 -0.3633 0.0922 -1.0235 28 1 -0.3633 -0.9325 0.4319 29 1 -0.3634 0.8403 0.5916 30 1 -0.0791 3.1002 -1.3285 31 1 0.6352 -2.0752 -1.3035 32 1 2.2593 -1.9986 -2.0623 33 1 2.9732 -3.9536 -1.0148 34 1 1.2275 -4.2976 -0.8798 35 1 1.7744 -6.2462 0.6125 36 1 3.5096 -5.8735 0.4772 37 1 3.8315 -6.5142 2.8513 38 1 2.0961 -6.8867 2.9859 39 1 5.3904 -8.2378 1.4249 40 1 1.2152 -9.1152 1.7687 41 1 2.4847 -1.8248 2.0914 42 1 0.7984 -1.9844 1.5149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972507778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:49 Heat of formation + Delta-G solvation = 63.312516 kcal Electronic energy + Delta-G solvation = -22863.877595 eV Core-core repulsion = 19460.333912 eV Total energy + Delta-G solvation = -3403.543684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43944 -39.74115 -37.49244 -34.80605 -34.07157 -31.71652 -31.52031 -29.87830 -29.35891 -27.75096 -26.07157 -24.73617 -22.94738 -22.27731 -22.17308 -20.22418 -19.30733 -18.83041 -18.05214 -17.06357 -16.72335 -16.00877 -15.32102 -15.04675 -14.72458 -14.63950 -14.32595 -13.65430 -13.47235 -13.33330 -13.03454 -12.75448 -12.57525 -12.44580 -12.33802 -11.96355 -11.87378 -11.33951 -11.25693 -10.92121 -10.79228 -10.74914 -10.49044 -10.46734 -10.27288 -9.93349 -9.89704 -9.86763 -9.60712 -8.73632 -8.59276 -8.30815 -6.84590 -5.76537 -3.21935 1.61108 2.49061 2.62461 2.86816 3.29287 3.38027 3.43430 3.45215 4.45864 4.48711 4.62647 4.72103 5.00093 5.03628 5.09915 5.22999 5.29272 5.35584 5.41960 5.50935 5.55189 5.61565 5.65184 5.79954 5.92410 6.03020 6.05832 6.11479 6.31474 6.38257 6.39493 6.56131 6.65155 6.76781 6.87481 6.96233 7.36285 7.37478 7.68313 7.78185 7.83957 8.33021 8.41821 9.18693 9.81042 10.28225 11.28209 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041784 B = 0.002612 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.952629 B =10718.286926 C =10836.583685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.587 5.587 3 C -0.259 4.259 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.104 3.896 15 N -0.614 5.614 16 C 0.522 3.478 17 O -0.550 6.550 18 C -0.128 4.128 19 C -0.026 4.026 20 C -0.232 4.232 21 C 0.057 3.943 22 N -0.299 5.299 23 N -0.481 5.481 24 H 0.438 0.562 25 C 0.059 3.941 26 C 0.084 3.916 27 H 0.031 0.969 28 H -0.001 1.001 29 H 0.046 0.954 30 H 0.253 0.747 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.184 0.816 40 H 0.176 0.824 41 H 0.071 0.929 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -21.722 1.299 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.020 4.020 15 N -0.348 5.348 16 C 0.311 3.689 17 O -0.428 6.428 18 C -0.169 4.169 19 C -0.065 4.065 20 C -0.244 4.244 21 C -0.130 4.130 22 N -0.121 5.121 23 N -0.189 5.189 24 H 0.282 0.718 25 C -0.088 4.088 26 C -0.040 4.040 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.201 0.799 40 H 0.193 0.807 41 H 0.090 0.910 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.703 -22.515 1.441 22.722 hybrid contribution -0.399 1.223 0.105 1.291 sum 2.303 -21.291 1.546 21.471 Atomic orbital electron populations 1.20819 0.82279 0.95608 0.99556 1.43838 1.01975 0.99877 1.85042 1.19213 0.96851 0.84886 1.37855 0.91157 1.24985 0.97568 0.98474 0.98521 1.70071 1.17046 1.26996 1.41187 0.86287 0.78417 0.83473 0.78060 1.20909 1.21628 1.21003 1.21399 0.96337 0.85811 0.90193 0.90431 1.23209 1.02790 0.92749 1.00427 1.22043 1.00557 0.99252 0.80145 1.48544 1.68956 1.09870 1.07463 1.20366 0.76615 0.85910 0.86015 1.90689 1.52573 1.84288 1.15268 1.21645 1.03632 0.91758 0.99829 1.19607 1.03297 0.87800 0.95757 1.20202 0.92629 0.98480 1.13072 1.23895 0.99216 0.92081 0.97831 1.77331 0.93405 1.17000 1.24399 1.46307 1.06174 1.14277 1.52095 0.71833 1.22454 0.99323 0.87811 0.99248 1.23005 1.01180 0.79432 1.00425 0.95050 0.98224 0.93484 0.93631 0.90530 0.90532 0.91873 0.92160 0.89373 0.89096 0.90295 0.90644 0.79950 0.80673 0.91041 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.55 59.85 0.45 4.30 16 2 N -0.59 -14.17 2.96 -171.04 -0.51 -14.67 16 3 C -0.26 -6.92 9.65 -15.06 -0.15 -7.07 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.08 5.12 -17.43 -0.09 -0.01 16 6 N -0.91 -25.81 10.51 55.49 0.58 -25.23 16 7 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.39 3.53 -65.78 -0.23 3.15 16 12 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 13 C -0.15 -2.44 6.50 -24.90 -0.16 -2.61 16 14 C 0.10 1.34 6.49 -3.06 -0.02 1.32 16 15 N -0.61 -9.45 3.33 -170.52 -0.57 -10.01 16 16 C 0.52 7.77 7.85 -10.99 -0.09 7.69 16 17 O -0.55 -10.20 16.24 5.55 0.09 -10.11 16 18 C -0.13 -1.32 4.87 -27.89 -0.14 -1.45 16 19 C -0.03 -0.25 4.99 -27.89 -0.14 -0.39 16 20 C -0.23 -2.07 5.35 -105.06 -0.56 -2.63 16 21 C 0.06 0.53 11.96 -17.36 -0.21 0.32 16 22 N -0.30 -3.07 12.70 30.62 0.39 -2.68 16 23 N -0.48 -3.58 7.36 30.45 0.22 -3.35 16 24 H 0.44 1.85 8.96 -182.61 -1.64 0.22 16 25 C 0.06 0.43 11.90 -17.22 -0.20 0.22 16 26 C 0.08 1.54 6.47 -2.53 -0.02 1.53 16 27 H 0.03 0.80 7.41 -51.93 -0.38 0.41 16 28 H 0.00 -0.01 6.38 -51.93 -0.33 -0.35 16 29 H 0.05 1.22 7.14 -51.93 -0.37 0.85 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 31 H 0.08 1.32 6.99 -51.93 -0.36 0.95 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 42 H 0.07 1.29 6.42 -51.93 -0.33 0.96 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -32.96 344.68 -8.77 -41.73 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.60 Total: -1.75 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.55 Total: 4.36 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.12 Total: -55.94 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.96 -8.77 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972507778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.040 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds