Wall clock time and date at job start Fri Apr 10 2020 14:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 120.00162 * 2 1 4 4 H 1.07996 * 120.00011 * 159.92849 * 3 2 1 5 5 C 1.38812 * 119.99581 * 339.65265 * 3 2 1 6 6 N 1.31621 * 120.00488 * 347.74179 * 5 3 2 7 7 Si 1.86808 * 119.99666 * 167.73889 * 5 3 2 8 8 H 1.48501 * 109.46810 * 60.00509 * 7 5 3 9 9 H 1.48505 * 109.46755 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47261 * 299.99956 * 7 5 3 11 11 C 1.46497 * 120.00088 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.88447 * 176.12137 * 11 2 1 13 13 C 1.55153 * 111.00260 * 52.19710 * 11 2 1 14 14 C 1.54325 * 102.94022 * 206.42321 * 13 11 2 15 15 N 1.47024 * 107.27346 * 22.19400 * 14 13 11 16 16 C 1.34772 * 125.65181 * 181.02438 * 15 14 13 17 17 O 1.21284 * 120.00647 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00121 * 0.04006 * 16 15 14 19 19 C 1.52994 * 109.47463 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47463 * 179.97438 * 19 18 16 21 21 C 1.39865 * 126.03875 * 90.01786 * 20 19 18 22 22 N 1.30842 * 108.20222 * 179.97438 * 21 20 19 23 23 N 1.40082 * 108.20521 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.04085 * 179.97438 * 23 22 21 25 25 C 1.34954 * 107.92229 * 359.76107 * 23 22 21 26 26 C 1.47422 * 108.70297 * 1.05789 * 15 14 13 27 27 H 1.08995 * 109.46870 * 84.85071 * 1 2 3 28 28 H 1.08999 * 109.47047 * 204.85411 * 1 2 3 29 29 H 1.09000 * 109.47242 * 324.85444 * 1 2 3 30 30 H 0.96992 * 120.00116 * 179.97438 * 6 5 3 31 31 H 1.08991 * 110.72408 * 324.78382 * 13 11 2 32 32 H 1.09002 * 110.72114 * 88.06879 * 13 11 2 33 33 H 1.08999 * 109.88893 * 262.77539 * 14 13 11 34 34 H 1.09006 * 110.01446 * 141.68107 * 14 13 11 35 35 H 1.09005 * 109.46817 * 300.00275 * 18 16 15 36 36 H 1.08999 * 109.47317 * 59.99524 * 18 16 15 37 37 H 1.09005 * 109.47070 * 299.99803 * 19 18 16 38 38 H 1.09005 * 109.47474 * 60.00036 * 19 18 16 39 39 H 1.08002 * 125.90112 * 359.96502 * 21 20 19 40 40 H 1.08006 * 126.12056 * 180.23580 * 25 23 22 41 41 H 1.08997 * 110.36915 * 217.03759 * 26 15 14 42 42 H 1.08996 * 110.46182 * 94.75518 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1805 1.2143 0.3210 5 6 1.5206 2.3505 -0.4180 6 7 0.3606 2.2864 -1.0368 7 14 2.3202 4.0090 -0.1023 8 1 3.6442 4.0559 -0.7732 9 1 1.4530 5.0873 -0.6416 10 1 2.4986 4.2024 1.3592 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 -0.0684 13 6 1.7067 -2.1947 -1.1435 14 6 2.0243 -3.6060 -0.6061 15 7 2.1176 -3.5050 0.8577 16 6 2.4011 -4.5194 1.6986 17 8 2.4517 -4.3202 2.8939 18 6 2.6554 -5.9012 1.1538 19 6 2.9506 -6.8590 2.3097 20 6 3.2044 -8.2410 1.7649 21 6 4.4456 -8.7594 1.3819 22 7 4.2647 -9.9855 0.9625 23 7 2.9005 -10.2866 1.0660 24 1 2.4817 -11.1274 0.8240 25 6 2.2726 -9.2018 1.5662 26 6 1.8489 -2.1106 1.2534 27 1 -0.3633 0.0922 -1.0235 28 1 -0.3633 -0.9325 0.4319 29 1 -0.3634 0.8403 0.5916 30 1 -0.0791 3.1002 -1.3285 31 1 0.6352 -2.0752 -1.3035 32 1 2.2593 -1.9986 -2.0623 33 1 2.9732 -3.9536 -1.0148 34 1 1.2275 -4.2976 -0.8798 35 1 1.7744 -6.2462 0.6125 36 1 3.5096 -5.8735 0.4772 37 1 3.8315 -6.5142 2.8513 38 1 2.0961 -6.8867 2.9859 39 1 5.3904 -8.2378 1.4249 40 1 1.2152 -9.1152 1.7687 41 1 2.4847 -1.8248 2.0914 42 1 0.7984 -1.9844 1.5149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972507778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:48 Heat of formation + Delta-G solvation = 41.692903 kcal Electronic energy + Delta-G solvation = -22864.815092 eV Core-core repulsion = 19460.333912 eV Total energy + Delta-G solvation = -3404.481181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05300 -40.98843 -38.91505 -36.53047 -34.88649 -33.43248 -32.19490 -31.32668 -30.30099 -29.06241 -28.06008 -25.89527 -24.38853 -23.53987 -22.84546 -20.96852 -20.80728 -19.97014 -18.95104 -18.70415 -17.83970 -17.52167 -16.56256 -16.38862 -15.85770 -15.38137 -15.31453 -15.09483 -14.96000 -14.48059 -14.37812 -14.17937 -13.80024 -13.58886 -13.38985 -13.19130 -12.94662 -12.89995 -12.75922 -12.44346 -12.37750 -12.12718 -12.11657 -11.98327 -11.81720 -11.45392 -11.39738 -10.84452 -10.62670 -10.54942 -9.59551 -9.37394 -8.80702 -7.82853 -5.29630 1.03476 1.47867 1.50669 1.56614 1.72161 1.80632 2.09932 2.17316 2.52775 3.29242 3.56417 3.62237 3.94276 3.96577 4.11309 4.12503 4.22001 4.31796 4.37142 4.40988 4.48795 4.64496 4.72766 4.76361 4.79870 4.87284 4.94090 4.95876 5.05420 5.24647 5.25942 5.33359 5.35567 5.40565 5.47234 5.63360 5.74193 5.74923 6.31219 6.50668 6.66468 6.77331 7.14453 7.24080 7.85601 8.28025 9.20086 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041784 B = 0.002612 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.952629 B =10718.286926 C =10836.583685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.604 5.604 3 C -0.267 4.267 4 H 0.071 0.929 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.274 1.274 9 H -0.294 1.294 10 H -0.282 1.282 11 C 0.165 3.835 12 H 0.072 0.928 13 C -0.143 4.143 14 C 0.111 3.889 15 N -0.616 5.616 16 C 0.518 3.482 17 O -0.593 6.593 18 C -0.115 4.115 19 C -0.016 4.016 20 C -0.250 4.250 21 C 0.048 3.952 22 N -0.335 5.335 23 N -0.474 5.474 24 H 0.451 0.549 25 C 0.074 3.926 26 C 0.096 3.904 27 H 0.011 0.989 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.249 0.751 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.194 0.806 40 H 0.208 0.792 41 H 0.050 0.950 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -23.863 0.527 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.326 5.326 3 C -0.397 4.397 4 H 0.089 0.911 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.200 1.200 9 H -0.220 1.220 10 H -0.209 1.209 11 C 0.056 3.944 12 H 0.091 0.909 13 C -0.182 4.182 14 C -0.011 4.011 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.474 6.474 18 C -0.154 4.154 19 C -0.056 4.056 20 C -0.262 4.262 21 C -0.138 4.138 22 N -0.158 5.158 23 N -0.183 5.183 24 H 0.297 0.703 25 C -0.075 4.075 26 C -0.030 4.030 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.211 0.789 40 H 0.225 0.775 41 H 0.068 0.932 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.006 -24.722 0.647 24.913 hybrid contribution -0.481 1.807 0.401 1.912 sum 2.524 -22.916 1.048 23.078 Atomic orbital electron populations 1.20495 0.82499 0.95551 0.97838 1.44002 1.02145 1.00933 1.85478 1.19529 0.97014 0.86232 1.36904 0.91088 1.25706 0.98324 1.01549 0.98978 1.70223 1.18298 1.27255 1.42494 0.85323 0.77718 0.79532 0.77742 1.19977 1.22008 1.20872 1.21540 0.95716 0.84835 0.92286 0.90940 1.23053 1.02003 0.93876 0.99296 1.22161 1.03326 0.97510 0.78139 1.48633 1.69031 1.08528 1.08784 1.21270 0.75199 0.87174 0.85381 1.90674 1.54319 1.85083 1.17358 1.21665 1.05397 0.88243 1.00116 1.19443 1.02347 0.88347 0.95429 1.20131 0.93004 0.98424 1.14601 1.24178 1.00075 0.92018 0.97507 1.77287 0.95039 1.17616 1.25834 1.46362 1.05465 1.15014 1.51446 0.70293 1.22939 1.00484 0.86884 0.97169 1.22581 0.99748 0.81599 0.99025 0.97092 0.95539 0.96619 0.94210 0.91614 0.89818 0.88891 0.89010 0.86847 0.87237 0.91799 0.91311 0.78898 0.77492 0.93187 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 7.55 127.77 0.96 9.74 16 2 N -0.60 -29.50 2.96 -695.03 -2.06 -31.56 16 3 C -0.27 -14.45 9.65 84.03 0.81 -13.64 16 4 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 5 C -0.05 -2.79 5.12 84.86 0.43 -2.35 16 6 N -0.94 -54.37 10.51 21.65 0.23 -54.14 16 7 Si 0.97 44.79 29.57 68.60 2.03 46.81 16 8 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 C 0.17 6.37 3.53 46.38 0.16 6.54 16 12 H 0.07 2.85 7.94 -2.39 -0.02 2.83 16 13 C -0.14 -4.30 6.50 31.78 0.21 -4.09 16 14 C 0.11 2.43 6.49 86.73 0.56 2.99 16 15 N -0.62 -17.61 3.33 -811.78 -2.70 -20.31 16 16 C 0.52 14.40 7.85 87.66 0.69 15.09 16 17 O -0.59 -21.75 16.24 -3.04 -0.05 -21.80 16 18 C -0.11 -1.95 4.87 29.85 0.15 -1.81 16 19 C -0.02 -0.29 4.99 29.85 0.15 -0.14 16 20 C -0.25 -3.81 5.35 -20.15 -0.11 -3.92 16 21 C 0.05 0.81 11.96 85.23 1.02 1.83 16 22 N -0.33 -6.27 12.70 -57.02 -0.72 -6.99 16 23 N -0.47 -5.80 7.36 -57.59 -0.42 -6.22 16 24 H 0.45 2.64 8.96 -213.33 -1.91 0.73 16 25 C 0.07 0.82 11.90 83.54 0.99 1.81 16 26 C 0.10 3.50 6.47 86.86 0.56 4.06 16 27 H 0.01 0.57 7.41 -2.39 -0.02 0.55 16 28 H 0.03 1.11 6.38 -2.39 -0.02 1.09 16 29 H 0.01 0.82 7.14 -2.39 -0.02 0.80 16 30 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.07 2.15 6.99 -2.39 -0.02 2.13 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.42 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 38 H 0.07 1.29 8.10 -2.38 -0.02 1.27 16 39 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 42 H 0.05 2.06 6.42 -2.39 -0.02 2.04 16 Total: -1.00 -73.22 344.68 2.00 -71.22 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -0.89 Total: 6.88 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.59 Total: 16.12 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -5.68 Total: -119.23 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.22 2.00 -71.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972507778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.911 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds