Wall clock time and date at job start Fri Apr 10 2020 14:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00303 * 2 1 4 4 C 1.46900 * 111.00256 * 123.95304 * 2 1 3 5 5 H 1.09005 * 109.46762 * 300.00152 * 4 2 1 6 6 C 1.50696 * 109.47499 * 179.97438 * 4 2 1 7 7 O 1.21284 * 120.00096 * 340.00143 * 6 4 2 8 8 N 1.34774 * 119.99838 * 160.00079 * 6 4 2 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.46953 * 180.02562 * 10 9 8 12 12 C 1.36942 * 120.00106 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99638 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.00269 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00220 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00206 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47022 * 90.00194 * 16 14 12 18 18 H 1.48498 * 109.47405 * 210.00872 * 16 14 12 19 19 H 1.48509 * 109.46837 * 330.00429 * 16 14 12 20 20 C 1.50705 * 109.46946 * 59.99585 * 4 2 1 21 21 C 1.38674 * 120.42015 * 220.00332 * 20 4 2 22 22 C 1.38631 * 118.41905 * 180.02562 * 21 20 4 23 23 C 1.38220 * 119.16187 * 0.02562 * 22 21 20 24 24 N 1.31861 * 120.76589 * 359.97438 * 23 22 21 25 25 C 1.31887 * 121.72284 * 359.70132 * 24 23 22 26 26 H 1.09003 * 109.46941 * 300.00268 * 1 2 3 27 27 H 1.09001 * 109.46932 * 59.99748 * 1 2 3 28 28 H 1.08987 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47301 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47000 * 299.99918 * 3 2 1 31 31 H 1.08994 * 109.47414 * 60.00250 * 3 2 1 32 32 H 0.97001 * 120.00676 * 359.97438 * 8 6 4 33 33 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 34 34 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 35 35 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 36 36 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 37 37 H 0.96994 * 120.00508 * 359.97438 * 11 10 9 38 38 H 0.97000 * 120.00140 * 179.97438 * 15 14 12 39 39 H 1.08001 * 120.78904 * 359.97438 * 21 20 4 40 40 H 1.08002 * 120.41640 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.61828 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.61399 * 180.31042 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 3.5019 -0.7440 1.1039 7 8 4.0817 -0.4823 0.0713 8 7 4.2049 -1.0153 2.2213 9 6 5.6694 -0.9935 2.1888 10 6 6.2156 -1.3342 3.5767 11 7 7.6800 -1.3117 3.5443 12 6 8.3944 -1.5883 4.6794 13 1 7.8781 -1.8225 5.5986 14 6 9.7820 -1.5665 4.6488 15 7 10.4686 -1.8318 5.7399 16 14 10.6749 -1.1606 3.0590 17 1 10.8977 0.3053 2.9768 18 1 11.9833 -1.8625 3.0330 19 1 9.8534 -1.6021 1.9033 20 6 1.5122 -2.1907 1.0506 21 6 1.1176 -2.8694 2.1937 22 6 0.6807 -4.1788 2.0659 23 6 0.6536 -4.7605 0.8123 24 7 1.0364 -4.0846 -0.2533 25 6 1.4517 -2.8356 -0.1700 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0275 0.0005 29 1 3.0852 1.3423 -0.0005 30 1 1.6460 1.8947 -0.8900 31 1 1.6461 1.8947 0.8899 32 1 3.7413 -1.2243 3.0473 33 1 6.0278 -1.7278 1.4674 34 1 6.0116 -0.0005 1.8969 35 1 5.8572 -0.6001 4.2984 36 1 5.8734 -2.3272 3.8681 37 1 8.1437 -1.1017 2.7186 38 1 11.4382 -1.8169 5.7184 39 1 1.1507 -2.3895 3.1607 40 1 0.3655 -4.7374 2.9348 41 1 0.3149 -5.7803 0.7043 42 1 1.7527 -2.3125 -1.0656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152604119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:56 Heat of formation + Delta-G solvation = 33.684310 kcal Electronic energy + Delta-G solvation = -23156.398083 eV Core-core repulsion = 19751.569624 eV Total energy + Delta-G solvation = -3404.828459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00992 -39.59496 -37.24602 -35.79427 -34.07566 -33.10349 -31.93878 -31.42264 -29.02109 -27.78231 -27.32246 -23.98593 -23.64715 -23.27225 -22.05019 -21.53084 -20.15957 -17.93218 -17.49993 -17.32192 -16.67925 -16.41158 -15.86484 -15.18978 -14.98936 -14.67385 -14.59284 -14.24298 -14.07869 -13.83431 -13.74526 -13.37740 -13.28692 -12.86738 -12.66899 -12.58111 -12.40160 -11.92939 -11.70616 -11.55328 -11.46332 -10.99721 -10.87521 -10.36967 -10.19136 -9.89254 -9.71403 -9.65719 -9.15579 -9.09211 -8.93715 -8.70456 -7.34298 -5.83308 -3.21084 0.76217 0.98803 2.50989 2.88402 3.36225 3.39974 3.43807 3.45113 3.74993 4.12581 4.44456 4.49851 4.54645 4.58048 4.67259 4.70031 4.84687 4.98209 5.04666 5.21782 5.26421 5.31327 5.32177 5.40504 5.54710 5.55173 5.55605 5.60837 5.78967 5.82447 5.89513 5.90902 6.30684 6.39353 6.50481 6.52907 6.57933 6.64199 7.43655 7.73680 7.89578 8.14711 8.34631 9.12126 9.84488 10.02532 11.34475 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003421 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.020692 B = 8182.788173 C = 8974.297459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.521 5.521 3 C 0.015 3.985 4 C 0.115 3.885 5 H 0.072 0.928 6 C 0.518 3.482 7 O -0.515 6.515 8 N -0.720 5.720 9 C 0.109 3.891 10 C 0.149 3.851 11 N -0.752 5.752 12 C -0.250 4.250 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.884 3.116 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.137 4.137 21 C -0.067 4.067 22 C -0.173 4.173 23 C 0.100 3.900 24 N -0.486 5.486 25 C 0.136 3.864 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.619 1.068 -8.799 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.245 5.245 3 C -0.132 4.132 4 C 0.002 3.998 5 H 0.089 0.911 6 C 0.302 3.698 7 O -0.390 6.390 8 N -0.372 5.372 9 C -0.015 4.015 10 C 0.021 3.979 11 N -0.399 5.399 12 C -0.380 4.380 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.579 5.579 16 Si 0.714 3.286 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.140 4.140 21 C -0.093 4.093 22 C -0.193 4.193 23 C -0.056 4.056 24 N -0.194 5.194 25 C -0.021 4.021 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.196 0.804 38 H 0.071 0.929 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -24.974 0.571 -10.570 27.125 hybrid contribution 0.293 0.933 1.101 1.473 sum -24.681 1.504 -9.469 26.478 Atomic orbital electron populations 1.22455 0.86483 1.02372 1.01103 1.61696 1.07795 1.14607 1.40440 1.22595 1.02884 0.87108 1.00623 1.20378 0.92677 0.92021 0.94737 0.91058 1.20094 0.88491 0.77335 0.83843 1.90713 1.70985 1.46783 1.30505 1.45875 1.07857 1.71215 1.12253 1.21617 0.77957 1.02337 0.99588 1.20718 0.85754 0.98855 0.92540 1.42527 1.00240 1.86391 1.10701 1.18997 0.89202 1.40615 0.89158 0.89112 1.24668 0.96049 1.01286 0.96826 1.69698 1.06332 1.55180 1.26653 0.86550 0.79597 0.78336 0.84095 1.20876 1.21530 1.20160 1.20387 1.02760 0.95448 0.95380 1.21486 0.95022 0.94601 0.98197 1.22111 1.01980 0.95763 0.99457 1.22887 0.94666 0.99852 0.88229 1.67843 1.10525 1.08035 1.33024 1.22825 0.92258 0.89542 0.97494 0.95408 0.90615 0.91288 0.89380 0.90768 0.95761 0.76710 0.91272 0.91205 0.94931 0.94999 0.80359 0.92897 0.84668 0.84466 0.82696 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.27 60.06 0.56 0.74 16 2 N -0.52 -5.23 3.95 -246.01 -0.97 -6.20 16 3 C 0.02 0.15 9.19 60.06 0.55 0.70 16 4 C 0.11 1.14 2.10 -70.02 -0.15 1.00 16 5 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 6 C 0.52 6.83 6.19 -10.99 -0.07 6.76 16 7 O -0.52 -8.67 14.71 5.55 0.08 -8.58 16 8 N -0.72 -8.99 5.56 -60.29 -0.33 -9.32 16 9 C 0.11 1.71 5.79 -4.04 -0.02 1.68 16 10 C 0.15 2.72 6.37 -4.05 -0.03 2.69 16 11 N -0.75 -17.72 5.41 -59.91 -0.32 -18.04 16 12 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 13 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 14 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 16 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 20 C -0.14 -1.35 3.73 -104.48 -0.39 -1.74 16 21 C -0.07 -0.53 9.82 -39.28 -0.39 -0.92 16 22 C -0.17 -1.32 10.11 -39.44 -0.40 -1.72 16 23 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 24 N -0.49 -5.69 10.36 -13.25 -0.14 -5.83 16 25 C 0.14 1.57 9.60 -17.55 -0.17 1.40 16 26 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.55 6.36 -51.94 -0.33 0.22 16 29 H 0.09 1.09 5.68 -51.93 -0.30 0.79 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.17 2.03 7.72 -52.49 -0.40 1.62 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -34.40 349.22 -7.57 -41.98 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.26 Total: 7.35 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.95 Total: 4.27 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.99 Total: -67.68 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.40 -7.57 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152604119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.661 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds