Wall clock time and date at job start Fri Apr 10 2020 14:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00303 * 2 1 4 4 C 1.46900 * 111.00256 * 123.95304 * 2 1 3 5 5 H 1.09005 * 109.46762 * 300.00152 * 4 2 1 6 6 C 1.50696 * 109.47499 * 179.97438 * 4 2 1 7 7 O 1.21284 * 120.00096 * 340.00143 * 6 4 2 8 8 N 1.34774 * 119.99838 * 160.00079 * 6 4 2 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.46953 * 180.02562 * 10 9 8 12 12 C 1.36942 * 120.00106 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99638 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.00269 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00220 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00206 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47022 * 90.00194 * 16 14 12 18 18 H 1.48498 * 109.47405 * 210.00872 * 16 14 12 19 19 H 1.48509 * 109.46837 * 330.00429 * 16 14 12 20 20 C 1.50705 * 109.46946 * 59.99585 * 4 2 1 21 21 C 1.38674 * 120.42015 * 220.00332 * 20 4 2 22 22 C 1.38631 * 118.41905 * 180.02562 * 21 20 4 23 23 C 1.38220 * 119.16187 * 0.02562 * 22 21 20 24 24 N 1.31861 * 120.76589 * 359.97438 * 23 22 21 25 25 C 1.31887 * 121.72284 * 359.70132 * 24 23 22 26 26 H 1.09003 * 109.46941 * 300.00268 * 1 2 3 27 27 H 1.09001 * 109.46932 * 59.99748 * 1 2 3 28 28 H 1.08987 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47301 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47000 * 299.99918 * 3 2 1 31 31 H 1.08994 * 109.47414 * 60.00250 * 3 2 1 32 32 H 0.97001 * 120.00676 * 359.97438 * 8 6 4 33 33 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 34 34 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 35 35 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 36 36 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 37 37 H 0.96994 * 120.00508 * 359.97438 * 11 10 9 38 38 H 0.97000 * 120.00140 * 179.97438 * 15 14 12 39 39 H 1.08001 * 120.78904 * 359.97438 * 21 20 4 40 40 H 1.08002 * 120.41640 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.61828 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.61399 * 180.31042 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 3.5019 -0.7440 1.1039 7 8 4.0817 -0.4823 0.0713 8 7 4.2049 -1.0153 2.2213 9 6 5.6694 -0.9935 2.1888 10 6 6.2156 -1.3342 3.5767 11 7 7.6800 -1.3117 3.5443 12 6 8.3944 -1.5883 4.6794 13 1 7.8781 -1.8225 5.5986 14 6 9.7820 -1.5665 4.6488 15 7 10.4686 -1.8318 5.7399 16 14 10.6749 -1.1606 3.0590 17 1 10.8977 0.3053 2.9768 18 1 11.9833 -1.8625 3.0330 19 1 9.8534 -1.6021 1.9033 20 6 1.5122 -2.1907 1.0506 21 6 1.1176 -2.8694 2.1937 22 6 0.6807 -4.1788 2.0659 23 6 0.6536 -4.7605 0.8123 24 7 1.0364 -4.0846 -0.2533 25 6 1.4517 -2.8356 -0.1700 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0275 0.0005 29 1 3.0852 1.3423 -0.0005 30 1 1.6460 1.8947 -0.8900 31 1 1.6461 1.8947 0.8899 32 1 3.7413 -1.2243 3.0473 33 1 6.0278 -1.7278 1.4674 34 1 6.0116 -0.0005 1.8969 35 1 5.8572 -0.6001 4.2984 36 1 5.8734 -2.3272 3.8681 37 1 8.1437 -1.1017 2.7186 38 1 11.4382 -1.8169 5.7184 39 1 1.1507 -2.3895 3.1607 40 1 0.3655 -4.7374 2.9348 41 1 0.3149 -5.7803 0.7043 42 1 1.7527 -2.3125 -1.0656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152604119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:56 Heat of formation + Delta-G solvation = 6.748321 kcal Electronic energy + Delta-G solvation = -23157.566115 eV Core-core repulsion = 19751.569624 eV Total energy + Delta-G solvation = -3405.996491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.82419 -40.49960 -38.15072 -37.26341 -35.58335 -33.94987 -33.38461 -32.56827 -30.31274 -28.67086 -28.22708 -25.40590 -24.60118 -23.95784 -23.35727 -22.83947 -21.15349 -19.84728 -18.47535 -18.07385 -17.55154 -17.21918 -17.02052 -16.44134 -16.27084 -15.79851 -15.63959 -15.43904 -15.19857 -15.02944 -14.70856 -14.69547 -14.16029 -13.99287 -13.65885 -13.46298 -13.29004 -13.20018 -13.01752 -12.76407 -12.62832 -12.49503 -12.32928 -12.10038 -11.84175 -11.27882 -11.04567 -10.67394 -10.43201 -10.18508 -9.90421 -9.38927 -9.37610 -8.06285 -5.41608 0.06747 0.33079 1.38697 1.39849 1.47063 1.50670 1.89314 2.45713 2.73782 2.98821 3.25747 3.41505 3.59842 3.74503 3.80622 3.86543 3.98673 4.04857 4.09967 4.17512 4.19399 4.37973 4.41639 4.52155 4.60085 4.63851 4.67746 4.88377 4.96297 4.98555 5.06125 5.07433 5.17754 5.22006 5.32437 5.71160 5.72135 5.83438 5.97727 6.16730 6.47491 7.02134 7.03115 7.15305 7.76794 7.93883 9.14475 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.003421 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.020692 B = 8182.788173 C = 8974.297459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.541 5.541 3 C 0.020 3.980 4 C 0.124 3.876 5 H 0.101 0.899 6 C 0.517 3.483 7 O -0.556 6.556 8 N -0.709 5.709 9 C 0.125 3.875 10 C 0.151 3.849 11 N -0.759 5.759 12 C -0.237 4.237 13 H 0.065 0.935 14 C -0.058 4.058 15 N -0.979 5.979 16 Si 0.950 3.050 17 H -0.276 1.276 18 H -0.294 1.294 19 H -0.256 1.256 20 C -0.141 4.141 21 C -0.064 4.064 22 C -0.166 4.166 23 C 0.088 3.912 24 N -0.518 5.518 25 C 0.116 3.884 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.416 0.584 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.366 0.634 38 H 0.259 0.741 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.678 1.211 -8.598 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.266 5.266 3 C -0.128 4.128 4 C 0.012 3.988 5 H 0.118 0.882 6 C 0.303 3.697 7 O -0.434 6.434 8 N -0.362 5.362 9 C 0.000 4.000 10 C 0.025 3.975 11 N -0.406 5.406 12 C -0.368 4.368 13 H 0.083 0.917 14 C -0.250 4.250 15 N -0.629 5.629 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.220 1.220 19 H -0.181 1.181 20 C -0.144 4.144 21 C -0.090 4.090 22 C -0.185 4.185 23 C -0.069 4.069 24 N -0.227 5.227 25 C -0.040 4.040 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.199 0.801 38 H 0.068 0.932 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.111 0.718 -10.374 29.037 hybrid contribution 0.804 0.829 1.092 1.589 sum -26.307 1.547 -9.282 27.939 Atomic orbital electron populations 1.22431 0.84888 1.02366 1.02126 1.61644 1.09216 1.14669 1.41041 1.22506 1.01066 0.87420 1.01805 1.20321 0.89913 0.92527 0.96045 0.88166 1.20715 0.89937 0.76023 0.83033 1.90699 1.72111 1.48499 1.32054 1.45691 1.06448 1.70980 1.13122 1.21213 0.79900 1.01465 0.97415 1.20823 0.82886 0.99495 0.94323 1.42564 1.02394 1.86228 1.09389 1.19008 0.89495 1.38690 0.89629 0.91710 1.25456 0.97094 1.02244 1.00222 1.69860 1.06482 1.57468 1.29136 0.85483 0.78070 0.78177 0.80525 1.20238 1.22038 1.18074 1.20363 1.03289 0.95297 0.95470 1.21889 0.93696 0.94695 0.98748 1.22484 1.00477 0.95751 0.99817 1.23366 0.94315 1.00766 0.88417 1.67776 1.11727 1.08418 1.34773 1.22610 0.93751 0.89947 0.97738 0.93899 0.90012 0.91770 0.92221 0.89994 0.94199 0.74772 0.92700 0.91792 0.93717 0.94260 0.80103 0.93164 0.81462 0.81297 0.80598 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.27 127.69 1.18 1.58 16 2 N -0.54 -10.22 3.95 -932.22 -3.68 -13.90 16 3 C 0.02 0.36 9.19 127.69 1.17 1.54 16 4 C 0.12 2.23 2.10 43.42 0.09 2.32 16 5 H 0.10 1.21 8.03 -2.38 -0.02 1.20 16 6 C 0.52 13.00 6.19 87.66 0.54 13.55 16 7 O -0.56 -18.80 14.71 -3.04 -0.04 -18.85 16 8 N -0.71 -16.26 5.56 -463.05 -2.57 -18.83 16 9 C 0.12 3.74 5.79 86.38 0.50 4.24 16 10 C 0.15 5.24 6.37 86.38 0.55 5.79 16 11 N -0.76 -34.79 5.41 -343.47 -1.86 -36.65 16 12 C -0.24 -13.29 10.47 84.03 0.88 -12.41 16 13 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 14 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 15 N -0.98 -62.04 13.97 21.65 0.30 -61.74 16 16 Si 0.95 45.49 27.74 68.60 1.90 47.40 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 20 C -0.14 -2.52 3.73 -19.77 -0.07 -2.60 16 21 C -0.06 -0.80 9.82 22.47 0.22 -0.58 16 22 C -0.17 -1.97 10.11 22.36 0.23 -1.74 16 23 C 0.09 1.43 11.18 84.68 0.95 2.38 16 24 N -0.52 -11.93 10.36 -195.84 -2.03 -13.96 16 25 C 0.12 2.67 9.60 84.67 0.81 3.48 16 26 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.94 6.36 -2.39 -0.02 0.92 16 29 H 0.06 1.47 5.68 -2.38 -0.01 1.45 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.42 6.75 8.47 -92.71 -0.79 5.96 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.37 16.36 5.53 -92.71 -0.51 15.85 16 38 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.14 3.76 7.72 -2.91 -0.02 3.73 16 Total: -1.00 -76.03 349.22 -0.79 -76.81 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.33 Total: 25.11 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 7.52 Total: 14.61 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -9.84 Total: -145.08 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.04 Total: -18.85 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.40 kcal Total: -76.03 -0.79 -76.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152604119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.562 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds