Wall clock time and date at job start Fri Apr 10 2020 14:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00113 * 2 1 4 4 C 1.52994 * 109.47001 * 270.00045 * 3 2 1 5 5 N 1.46503 * 109.47001 * 180.02562 * 4 3 2 6 6 C 1.36940 * 120.00080 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99834 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99942 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47207 * 60.00447 * 10 8 6 12 12 H 1.48506 * 109.47063 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47391 * 300.00118 * 10 8 6 14 14 C 1.34773 * 120.00007 * 179.97438 * 2 1 3 15 15 O 1.21577 * 120.00242 * 183.51955 * 14 2 1 16 16 C 1.47703 * 120.00259 * 3.52299 * 14 2 1 17 17 C 1.41640 * 126.50053 * 173.45657 * 16 14 2 18 18 C 1.34706 * 105.33891 * 179.97438 * 17 16 14 19 19 N 1.35504 * 107.71102 * 0.02562 * 18 17 16 20 20 N 1.28429 * 109.71908 * 359.92907 * 19 18 17 21 21 C 1.47001 * 123.90443 * 179.97438 * 19 18 17 22 22 C 1.53135 * 108.89142 * 342.35700 * 21 19 18 23 23 C 1.53147 * 109.61543 * 51.08432 * 22 21 19 24 24 C 1.50798 * 127.53775 * 179.97438 * 18 17 16 25 25 H 1.08996 * 109.47532 * 264.08418 * 1 2 3 26 26 H 1.09002 * 109.47117 * 24.08536 * 1 2 3 27 27 H 1.09006 * 109.47187 * 144.08496 * 1 2 3 28 28 H 1.08997 * 109.46832 * 29.99982 * 3 2 1 29 29 H 1.09006 * 109.47147 * 149.99743 * 3 2 1 30 30 H 1.08997 * 109.47277 * 299.99665 * 4 3 2 31 31 H 1.08999 * 109.47766 * 60.00043 * 4 3 2 32 32 H 0.97003 * 120.00186 * 359.97438 * 5 4 3 33 33 H 0.96995 * 120.00286 * 180.02562 * 9 8 6 34 34 H 1.08003 * 127.33513 * 359.97438 * 17 16 14 35 35 H 1.08991 * 109.56649 * 222.53217 * 21 19 18 36 36 H 1.09000 * 109.66028 * 102.23274 * 21 19 18 37 37 H 1.09001 * 109.44742 * 291.04028 * 22 21 19 38 38 H 1.09002 * 109.44705 * 171.12793 * 22 21 19 39 39 H 1.09004 * 109.54444 * 170.54323 * 23 22 21 40 40 H 1.08998 * 109.54403 * 50.28597 * 23 22 21 41 41 H 1.09000 * 109.71533 * 44.75893 * 24 18 17 42 42 H 1.09001 * 109.71946 * 284.10763 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4425 6 6 3.5275 3.5720 -2.6284 7 1 3.2572 3.1045 -3.5637 8 6 4.2216 4.7741 -2.6284 9 7 4.5516 5.3435 -1.4885 10 14 4.6888 5.5828 -4.2461 11 1 3.4594 5.8785 -5.0248 12 1 5.4194 6.8469 -3.9747 13 1 5.5594 4.6659 -5.0248 14 6 2.1388 -1.1672 0.0005 15 8 3.3529 -1.1682 0.0652 16 6 1.4024 -2.4452 -0.0775 17 6 1.9680 -3.7363 -0.2165 18 6 0.9208 -4.5832 -0.2419 19 7 -0.2094 -3.8448 -0.1256 20 7 0.0938 -2.6005 -0.0298 21 6 -1.5641 -4.4155 -0.1134 22 6 -1.5086 -5.8366 -0.6814 23 6 -0.4161 -6.6347 0.0362 24 6 0.9566 -6.0848 -0.3753 25 1 -0.3634 -0.1059 1.0221 26 1 -0.3633 0.9382 -0.4194 27 1 -0.3634 -0.8323 -0.6028 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1384 0.5139 30 1 3.0415 0.9508 -1.9563 31 1 1.5001 1.8408 -1.9564 32 1 3.4280 3.3989 -0.6024 33 1 5.0362 6.1837 -1.4885 34 1 3.0159 -3.9882 -0.2871 35 1 -2.2239 -3.8025 -0.7272 36 1 -1.9401 -4.4456 0.9092 37 1 -1.2853 -5.7929 -1.7474 38 1 -2.4717 -6.3247 -0.5325 39 1 -0.4871 -7.6852 -0.2459 40 1 -0.5412 -6.5363 1.1144 41 1 1.7265 -6.4939 0.2790 42 1 1.1689 -6.3573 -1.4091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691357689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:16 Heat of formation + Delta-G solvation = 37.448481 kcal Electronic energy + Delta-G solvation = -22996.917937 eV Core-core repulsion = 19592.252704 eV Total energy + Delta-G solvation = -3404.665232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.83789 -40.76056 -37.53765 -37.40949 -36.10379 -34.05829 -33.47167 -31.57892 -29.78971 -29.61382 -27.64082 -26.31008 -25.13713 -24.08733 -23.14035 -22.72910 -20.82595 -19.84327 -19.16812 -17.98766 -17.80751 -17.33497 -17.06585 -16.65036 -16.25073 -15.53397 -15.38626 -15.21905 -15.08353 -14.94431 -14.76707 -14.64924 -14.43114 -13.98350 -13.65990 -13.44750 -13.10303 -12.90573 -12.85801 -12.74532 -12.37386 -12.18657 -12.07670 -11.90948 -11.88537 -11.85416 -11.50272 -11.21654 -10.98968 -10.12858 -9.92970 -9.71805 -9.09111 -7.98600 -5.30191 0.47150 1.09978 1.44094 1.45959 1.49982 1.56107 1.93677 2.28936 2.55139 3.18543 3.33960 3.51589 3.67677 3.81364 3.91063 4.00845 4.03482 4.19782 4.28039 4.33831 4.37818 4.43365 4.50889 4.51806 4.70251 4.70841 4.74501 4.88597 4.91429 4.96553 5.03889 5.04781 5.06849 5.15972 5.29693 5.33178 5.41639 5.52270 5.88395 6.22289 6.27855 6.83061 7.08306 7.28385 7.98630 8.25886 9.24641 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033899 B = 0.002718 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.780225 B =10299.451538 C =10354.008800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.122 3.878 4 C 0.151 3.849 5 N -0.742 5.742 6 C -0.255 4.255 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.981 3.019 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.590 3.410 15 O -0.577 6.577 16 C -0.040 4.040 17 C -0.206 4.206 18 C 0.027 3.973 19 N -0.278 5.278 20 N -0.258 5.258 21 C 0.107 3.893 22 C -0.131 4.131 23 C -0.124 4.124 24 C -0.054 4.054 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.065 0.935 30 H -0.001 1.001 31 H 0.030 0.970 32 H 0.377 0.623 33 H 0.254 0.746 34 H 0.156 0.844 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 -29.222 4.519 35.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.330 5.330 3 C -0.002 4.002 4 C 0.023 3.977 5 N -0.385 5.385 6 C -0.386 4.386 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.378 3.622 15 O -0.455 6.455 16 C -0.198 4.198 17 C -0.234 4.234 18 C -0.098 4.098 19 N -0.068 5.068 20 N -0.095 5.095 21 C -0.011 4.011 22 C -0.169 4.169 23 C -0.161 4.161 24 C -0.092 4.092 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.048 0.952 32 H 0.209 0.791 33 H 0.063 0.937 34 H 0.174 0.826 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.501 -28.633 4.488 34.932 hybrid contribution 1.588 0.815 -0.470 1.846 sum -17.912 -27.818 4.018 33.329 Atomic orbital electron populations 1.22250 0.76424 1.04313 1.03328 1.47713 1.08890 1.04681 1.71678 1.21440 0.97548 0.84547 0.96634 1.20917 0.94324 0.86954 0.95515 1.42368 1.67572 1.22860 1.05721 1.19560 1.29429 1.02752 0.86861 0.90965 1.25663 1.01467 0.98735 1.00682 1.69816 1.45830 1.19902 1.26215 0.85116 0.78065 0.77301 0.78675 1.19873 1.21563 1.20609 1.17486 0.85916 0.82911 0.75906 1.90768 1.14889 1.87380 1.52503 1.21634 0.90566 0.94505 1.13052 1.21471 1.00776 0.90460 1.10652 1.21768 0.85332 0.97433 1.05220 1.46414 1.09019 1.02490 1.48852 1.73518 1.14957 1.01275 1.19760 1.22655 0.76825 0.96233 1.05362 1.21988 1.02503 0.91605 1.00821 1.21728 0.92060 1.01337 1.00981 1.20586 1.00532 0.83797 1.04298 0.91311 0.90129 0.88623 0.88135 0.91671 0.98331 0.95233 0.79126 0.93683 0.82636 0.87136 0.87283 0.90686 0.85744 0.87758 0.91035 0.88186 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 9.62 127.77 1.23 3.27 16 2 N -0.60 -20.90 2.87 -850.36 -2.44 -23.34 16 3 C 0.12 4.79 5.52 86.38 0.48 5.27 16 4 C 0.15 7.06 6.58 86.38 0.57 7.63 16 5 N -0.74 -41.62 5.60 -343.46 -1.92 -43.54 16 6 C -0.25 -15.34 9.99 84.03 0.84 -14.50 16 7 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 9 N -0.97 -61.65 13.06 21.65 0.28 -61.36 16 10 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 14 C 0.59 22.78 7.68 86.75 0.67 23.45 16 15 O -0.58 -26.92 16.49 -3.96 -0.07 -26.98 16 16 C -0.04 -1.26 6.82 42.48 0.29 -0.97 16 17 C -0.21 -5.59 10.76 22.30 0.24 -5.35 16 18 C 0.03 0.51 6.57 41.21 0.27 0.78 16 19 N -0.28 -5.14 3.74 -333.35 -1.25 -6.38 16 20 N -0.26 -6.56 8.55 -48.06 -0.41 -6.97 16 21 C 0.11 0.84 7.17 86.33 0.62 1.46 16 22 C -0.13 -0.36 5.91 30.69 0.18 -0.17 16 23 C -0.12 -0.44 5.98 30.81 0.18 -0.25 16 24 C -0.05 -0.49 6.28 30.04 0.19 -0.30 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.91 8.03 -2.39 -0.02 1.90 16 27 H 0.10 2.42 5.36 -2.38 -0.01 2.41 16 28 H 0.10 3.50 8.07 -2.39 -0.02 3.48 16 29 H 0.06 2.86 7.37 -2.38 -0.02 2.84 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.38 21.93 7.67 -92.71 -0.71 21.22 16 33 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.31 8.11 -2.39 -0.02 0.29 16 38 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -82.27 345.79 2.75 -79.52 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.31 Total: 22.59 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.22 Total: 16.37 kcal Atomic # 7 Polarization: -135.86 SS G_CDS: -5.74 Total: -141.60 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -82.27 2.75 -79.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691357689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.970 kcal (2) G-P(sol) polarization free energy of solvation -82.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds