Wall clock time and date at job start Fri Apr 10 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 119.99933 * 2 1 4 4 C 1.53001 * 109.46943 * 276.88665 * 3 2 1 5 5 N 1.46505 * 109.46759 * 177.12230 * 4 3 2 6 6 C 1.36932 * 119.99601 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00674 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99697 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99764 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00100 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47344 * 89.99900 * 10 8 6 12 12 H 1.48502 * 109.47363 * 209.99811 * 10 8 6 13 13 H 1.48498 * 109.47222 * 330.00052 * 10 8 6 14 14 C 1.34775 * 120.00351 * 180.02562 * 2 1 3 15 15 O 1.21284 * 119.99503 * 6.12098 * 14 2 1 16 16 C 1.50698 * 120.00476 * 186.12685 * 14 2 1 17 17 H 1.09006 * 109.46329 * 49.07604 * 16 14 2 18 18 C 1.53143 * 109.47087 * 169.06813 * 16 14 2 19 19 C 1.53395 * 109.24464 * 189.48655 * 18 16 14 20 20 C 1.51039 * 108.21327 * 311.18332 * 19 18 16 21 21 N 1.30084 * 127.39369 * 195.98738 * 20 19 18 22 22 C 1.34289 * 109.21425 * 179.97438 * 21 20 19 23 23 C 1.34857 * 108.07342 * 0.02562 * 22 21 20 24 24 N 1.35429 * 123.97920 * 15.95486 * 20 19 18 25 25 C 1.46469 * 124.82212 * 0.10447 * 24 20 19 26 26 H 1.09002 * 109.47407 * 85.15220 * 1 2 3 27 27 H 1.09003 * 109.47053 * 205.15991 * 1 2 3 28 28 H 1.09000 * 109.46890 * 325.15337 * 1 2 3 29 29 H 1.08995 * 109.46968 * 156.88396 * 3 2 1 30 30 H 1.08995 * 109.46844 * 36.88946 * 3 2 1 31 31 H 1.08999 * 109.47178 * 57.11970 * 4 3 2 32 32 H 1.09000 * 109.47023 * 297.11634 * 4 3 2 33 33 H 0.96996 * 119.99872 * 359.71818 * 5 4 3 34 34 H 0.96998 * 119.99979 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.50709 * 309.41941 * 18 16 14 36 36 H 1.09001 * 109.50816 * 69.50686 * 18 16 14 37 37 H 1.08998 * 109.71513 * 70.86105 * 19 18 16 38 38 H 1.09006 * 109.71496 * 191.50536 * 19 18 16 39 39 H 1.08008 * 125.96522 * 180.02562 * 22 21 20 40 40 H 1.07999 * 126.65384 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.58969 * 257.34542 * 25 24 20 42 42 H 1.09002 * 109.57569 * 136.93396 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3027 1.7969 -1.4321 5 7 2.9747 3.0987 -1.4243 6 6 3.1824 3.7690 -2.6002 7 1 2.8513 3.3378 -3.5334 8 6 3.8187 5.0027 -2.5928 9 7 4.0179 5.6472 -3.7230 10 14 4.3908 5.7489 -0.9788 11 1 5.7805 5.3090 -0.6951 12 1 4.3508 7.2301 -1.0764 13 1 3.4961 5.3007 0.1184 14 6 2.1389 -1.1671 -0.0005 15 8 1.5377 -2.2144 -0.1130 16 6 3.6394 -1.1710 0.1388 17 1 3.9277 -0.5414 0.9807 18 6 4.1259 -2.6026 0.3819 19 6 5.6129 -2.5744 0.7575 20 6 6.3375 -1.7113 -0.2482 21 7 7.6192 -1.6560 -0.4637 22 6 7.8653 -0.7668 -1.4394 23 6 6.6862 -0.2511 -1.8426 24 7 5.7197 -0.8487 -1.0898 25 6 4.2730 -0.6268 -1.1463 26 1 -0.3634 0.0868 -1.0240 27 1 -0.3633 -0.9302 0.4369 28 1 -0.3633 0.8434 0.5872 29 1 3.1976 1.1109 0.4034 30 1 1.6673 1.9944 0.6169 31 1 1.3033 1.9064 -1.8533 32 1 2.8771 1.0952 -2.0369 33 1 3.2684 3.4879 -0.5858 34 1 4.4628 6.5091 -3.7179 35 1 3.5533 -3.0484 1.1953 36 1 3.9898 -3.1922 -0.5247 37 1 5.7320 -2.1542 1.7561 38 1 6.0176 -3.5862 0.7329 39 1 8.8378 -0.5094 -1.8326 40 1 6.5367 0.4906 -2.6133 41 1 3.8567 -1.1484 -2.0082 42 1 4.0703 0.4409 -1.2299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691369583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:26 Heat of formation + Delta-G solvation = 29.106293 kcal Electronic energy + Delta-G solvation = -24237.792243 eV Core-core repulsion = 20832.765266 eV Total energy + Delta-G solvation = -3405.026977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.36118 -41.35912 -37.89836 -37.31112 -36.06093 -34.22238 -33.55150 -31.57764 -30.16645 -29.46745 -27.89365 -25.68146 -25.33444 -23.61347 -23.24440 -22.33847 -20.71098 -20.04132 -19.40327 -18.44234 -18.26240 -17.10803 -16.88371 -16.73597 -16.38564 -15.82738 -15.53488 -15.23795 -15.19143 -15.06659 -14.80231 -14.55431 -14.36485 -14.07381 -13.72175 -13.47176 -13.15674 -13.00230 -12.91664 -12.83060 -12.74072 -12.57973 -12.15115 -12.10503 -12.00232 -11.83517 -11.11363 -10.98069 -10.95555 -10.59183 -9.84967 -9.35437 -9.32638 -8.03693 -5.39779 1.07056 1.26666 1.38587 1.43220 1.50148 1.73649 1.89029 2.13394 2.47952 3.10905 3.24205 3.28593 3.38182 3.49208 3.73978 3.80241 3.93477 4.00753 4.06075 4.12950 4.25694 4.30280 4.40650 4.48623 4.53336 4.56417 4.64009 4.72349 4.84453 4.91189 4.92907 4.95590 5.07664 5.12175 5.32427 5.36924 5.73335 5.78709 6.14723 6.18715 6.20159 6.93417 7.05638 7.09420 7.77369 7.97171 9.17273 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.006035 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.629881 B = 4638.607004 C = 6400.696797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.604 5.604 3 C 0.099 3.901 4 C 0.133 3.867 5 N -0.751 5.751 6 C -0.236 4.236 7 H 0.054 0.946 8 C -0.058 4.058 9 N -0.982 5.982 10 Si 0.952 3.048 11 H -0.280 1.280 12 H -0.301 1.301 13 H -0.242 1.242 14 C 0.528 3.472 15 O -0.560 6.560 16 C -0.116 4.116 17 H 0.126 0.874 18 C -0.096 4.096 19 C -0.026 4.026 20 C 0.194 3.806 21 N -0.521 5.521 22 C -0.049 4.049 23 C -0.056 4.056 24 N -0.454 5.454 25 C 0.099 3.901 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.028 0.972 32 H 0.032 0.968 33 H 0.370 0.630 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.083 0.917 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -14.569 13.094 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.336 5.336 3 C -0.024 4.024 4 C 0.006 3.994 5 N -0.398 5.398 6 C -0.366 4.366 7 H 0.072 0.928 8 C -0.250 4.250 9 N -0.632 5.632 10 Si 0.778 3.222 11 H -0.206 1.206 12 H -0.228 1.228 13 H -0.166 1.166 14 C 0.315 3.685 15 O -0.438 6.438 16 C -0.137 4.137 17 H 0.144 0.856 18 C -0.135 4.135 19 C -0.065 4.065 20 C -0.069 4.069 21 N -0.240 5.240 22 C -0.196 4.196 23 C -0.189 4.189 24 N -0.137 5.137 25 C -0.023 4.023 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.202 0.798 40 H 0.199 0.801 41 H 0.101 0.899 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.025 -15.515 13.199 20.471 hybrid contribution -0.092 1.714 -0.647 1.834 sum -2.116 -13.802 12.552 18.776 Atomic orbital electron populations 1.21827 0.77732 1.04102 1.02510 1.47800 1.08025 1.05538 1.72231 1.21914 0.98661 0.85150 0.96723 1.21301 0.95896 0.86213 0.96016 1.42457 1.71933 1.20345 1.05042 1.18900 1.30864 1.00119 0.86766 0.92764 1.25492 1.01500 0.97908 1.00062 1.69882 1.49352 1.16536 1.27407 0.85472 0.78930 0.77147 0.80605 1.20574 1.22769 1.16575 1.20360 0.89383 0.83136 0.75597 1.90698 1.70580 1.32094 1.50422 1.21646 0.91498 1.01466 0.99113 0.85581 1.21477 0.94700 0.93170 1.04124 1.20356 0.91912 0.98946 0.95293 1.24016 0.88493 0.96766 0.97576 1.70021 1.14039 1.21619 1.18347 1.22686 0.98826 0.99249 0.98791 1.22935 0.88655 1.04697 1.02650 1.45370 1.07429 1.31794 1.29065 1.22407 0.76865 1.04354 0.98644 0.92783 0.90452 0.88832 0.88535 0.87724 0.95424 0.95059 0.79660 0.93311 0.87735 0.91528 0.87212 0.87117 0.79809 0.80105 0.89915 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 10.48 127.77 1.34 2.78 16 2 N -0.60 -12.45 2.88 -846.75 -2.44 -14.88 16 3 C 0.10 2.10 5.03 86.38 0.43 2.53 16 4 C 0.13 4.11 5.86 86.38 0.51 4.61 16 5 N -0.75 -30.10 5.41 -343.44 -1.86 -31.96 16 6 C -0.24 -12.37 10.47 84.04 0.88 -11.49 16 7 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 8 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 9 N -0.98 -60.38 13.97 21.65 0.30 -60.08 16 10 Si 0.95 41.99 27.74 68.60 1.90 43.90 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 13 H -0.24 -9.13 6.51 99.48 0.65 -8.48 16 14 C 0.53 11.88 6.93 87.66 0.61 12.48 16 15 O -0.56 -15.72 15.56 -3.04 -0.05 -15.77 16 16 C -0.12 -2.23 1.69 -11.40 -0.02 -2.25 16 17 H 0.13 2.00 7.06 -2.38 -0.02 1.98 16 18 C -0.10 -1.68 4.61 30.77 0.14 -1.54 16 19 C -0.03 -0.46 6.33 30.09 0.19 -0.27 16 20 C 0.19 5.07 7.65 138.23 1.06 6.13 16 21 N -0.52 -15.87 11.24 -187.51 -2.11 -17.97 16 22 C -0.05 -1.41 11.87 83.54 0.99 -0.42 16 23 C -0.06 -1.61 11.64 83.22 0.97 -0.64 16 24 N -0.45 -12.11 3.13 -513.83 -1.61 -13.72 16 25 C 0.10 2.35 5.29 86.47 0.46 2.80 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.42 7.37 -2.39 -0.02 1.40 16 28 H 0.09 1.27 8.02 -2.39 -0.02 1.25 16 29 H 0.10 1.82 5.26 -2.39 -0.01 1.81 16 30 H 0.10 1.92 8.03 -2.39 -0.02 1.90 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 1.01 5.58 -2.39 -0.01 1.00 16 33 H 0.37 13.77 5.53 -92.71 -0.51 13.26 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.10 1.56 7.97 -2.38 -0.02 1.54 16 36 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.18 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.18 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 42 H 0.11 2.91 3.73 -2.39 -0.01 2.90 16 Total: -1.00 -71.80 333.84 2.63 -69.16 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.47 Total: 29.30 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 8.02 Total: 12.02 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -7.71 Total: -138.62 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.05 Total: -15.77 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.90 Total: 43.90 kcal Total: -71.80 2.63 -69.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691369583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.270 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds