Wall clock time and date at job start Fri Apr 10 2020 14:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00335 * 2 1 4 4 C 1.52998 * 109.47485 * 270.00499 * 3 2 1 5 5 N 1.46493 * 109.46977 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99890 * 180.02562 * 5 4 3 7 7 H 1.08005 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00117 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99909 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99849 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.47326 * 90.00483 * 10 8 6 12 12 H 1.48502 * 109.46983 * 209.99970 * 10 8 6 13 13 H 1.48497 * 109.47424 * 329.99992 * 10 8 6 14 14 C 1.34781 * 119.99738 * 180.02562 * 2 1 3 15 15 O 1.21285 * 119.99950 * 179.97438 * 14 2 1 16 16 C 1.50698 * 119.99989 * 0.02562 * 14 2 1 17 17 H 1.09005 * 109.42673 * 60.10324 * 16 14 2 18 18 C 1.53028 * 109.42841 * 179.97438 * 16 14 2 19 19 C 1.53375 * 109.74069 * 191.77233 * 18 16 14 20 20 C 1.50946 * 108.19738 * 309.34514 * 19 18 16 21 21 N 1.30130 * 128.28275 * 196.77600 * 20 19 18 22 22 N 1.40303 * 108.12544 * 179.70491 * 21 20 19 23 23 H 0.97004 * 126.00559 * 180.08504 * 22 21 20 24 24 C 1.35204 * 107.99370 * 0.03967 * 22 21 20 25 25 C 1.34574 * 107.61507 * 0.03974 * 24 22 21 26 26 C 1.50885 * 128.32225 * 179.74423 * 25 24 22 27 27 H 1.09005 * 109.46638 * 269.99821 * 1 2 3 28 28 H 1.09001 * 109.46676 * 29.99393 * 1 2 3 29 29 H 1.08993 * 109.47099 * 149.99550 * 1 2 3 30 30 H 1.09000 * 109.46847 * 30.00713 * 3 2 1 31 31 H 1.08999 * 109.46961 * 149.99794 * 3 2 1 32 32 H 1.09001 * 109.46859 * 299.99604 * 4 3 2 33 33 H 1.08993 * 109.46916 * 59.99606 * 4 3 2 34 34 H 0.96995 * 120.00528 * 359.97438 * 5 4 3 35 35 H 0.96993 * 119.99756 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.42565 * 71.69165 * 18 16 14 37 37 H 1.09003 * 109.42757 * 311.85584 * 18 16 14 38 38 H 1.09004 * 109.72030 * 189.66680 * 19 18 16 39 39 H 1.09001 * 109.71850 * 69.02467 * 19 18 16 40 40 H 1.08002 * 126.19224 * 180.29775 * 24 22 21 41 41 H 1.08996 * 109.71844 * 316.27987 * 26 25 24 42 42 H 1.09003 * 109.71514 * 76.93276 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1856 2.9788 -1.4423 6 6 3.5276 3.5721 -2.6282 7 1 3.2572 3.1047 -3.5636 8 6 4.2218 4.7742 -2.6281 9 7 4.5509 5.3441 -3.7680 10 14 4.6888 5.5829 -1.0104 11 1 6.0251 5.0971 -0.5817 12 1 4.7315 7.0566 -1.1879 13 1 3.6813 5.2379 0.0245 14 6 2.1389 -1.1673 -0.0005 15 8 3.3517 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0017 17 1 0.7606 -2.5295 -0.8932 18 6 2.3806 -3.6348 -0.0027 19 6 1.6439 -4.9471 -0.2984 20 6 0.4608 -5.0440 0.6339 21 7 -0.2457 -6.0950 0.9334 22 7 -1.2385 -5.7080 1.8461 23 1 -1.9078 -6.2887 2.2409 24 6 -1.0978 -4.3837 2.0796 25 6 -0.0584 -3.9486 1.3439 26 6 0.4998 -2.5501 1.2483 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6086 2.0283 0.5139 31 1 3.1500 1.1383 0.5139 32 1 3.0416 0.9508 -1.9563 33 1 1.5002 1.8408 -1.9562 34 1 3.4282 3.3988 -0.6023 35 1 5.0363 6.1839 -3.7679 36 1 2.8616 -3.7010 0.9731 37 1 3.1374 -3.4634 -0.7682 38 1 2.3139 -5.7906 -0.1314 39 1 1.2987 -4.9502 -1.3323 40 1 -1.7066 -3.7845 2.7404 41 1 -0.3168 -1.8330 1.1656 42 1 1.0948 -2.3303 2.1347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691555742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:19 Heat of formation + Delta-G solvation = 53.543098 kcal Electronic energy + Delta-G solvation = -23189.097792 eV Core-core repulsion = 19785.130475 eV Total energy + Delta-G solvation = -3403.967318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81508 -40.05868 -36.59006 -35.88552 -34.50916 -32.60817 -31.48083 -30.76043 -29.51622 -28.17221 -26.66131 -24.86167 -23.87565 -22.23804 -21.36973 -21.22423 -19.38282 -18.83383 -17.99031 -17.58408 -17.03942 -16.07305 -15.67879 -15.31691 -14.67015 -14.50552 -14.09717 -14.02903 -13.85076 -13.67853 -13.39121 -13.21092 -12.93935 -12.79015 -12.62516 -12.22502 -12.08196 -11.92326 -11.55551 -11.24144 -11.11636 -11.07837 -11.01525 -10.71400 -10.54829 -10.14873 -9.68282 -9.61167 -9.55734 -8.86756 -8.74163 -8.53996 -7.21533 -5.73779 -3.09826 1.58149 2.42236 2.53206 2.72061 3.03933 3.39848 3.43833 3.48141 4.09680 4.38333 4.50016 4.62185 4.62649 4.78354 4.91232 5.01164 5.15877 5.17519 5.25916 5.27781 5.35891 5.41336 5.50407 5.55484 5.60089 5.63614 5.69168 5.71257 5.79000 5.86660 5.98181 6.00184 6.12111 6.35337 6.48024 6.66864 6.84726 6.95706 7.36902 7.46646 8.01659 8.27997 8.44658 9.23324 9.95489 10.14830 11.44629 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038560 B = 0.002868 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.972301 B = 9761.964488 C =10019.211835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.104 3.896 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.887 3.113 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.515 3.485 15 O -0.531 6.531 16 C -0.102 4.102 17 H 0.100 0.900 18 C -0.097 4.097 19 C -0.040 4.040 20 C 0.086 3.914 21 N -0.291 5.291 22 N -0.487 5.487 23 H 0.438 0.562 24 C 0.062 3.938 25 C -0.233 4.233 26 C -0.039 4.039 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.176 0.824 41 H 0.085 0.915 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.398 -21.431 14.129 29.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.345 5.345 3 C -0.019 4.019 4 C 0.018 3.982 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.192 4.192 9 N -0.583 5.583 10 Si 0.717 3.283 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.303 3.697 15 O -0.406 6.406 16 C -0.123 4.123 17 H 0.118 0.882 18 C -0.136 4.136 19 C -0.079 4.079 20 C -0.083 4.083 21 N -0.113 5.113 22 N -0.195 5.195 23 H 0.282 0.718 24 C -0.084 4.084 25 C -0.245 4.245 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.193 0.807 41 H 0.103 0.897 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.897 -22.616 13.696 30.347 hybrid contribution -0.173 1.323 1.473 1.987 sum -15.070 -21.293 15.169 30.176 Atomic orbital electron populations 1.21986 0.79818 1.03533 1.01525 1.47765 1.06846 1.06199 1.73662 1.21719 0.97513 0.83637 0.99035 1.20888 0.95341 0.88584 0.93352 1.42563 1.68761 1.23231 1.05445 1.19038 1.29661 1.02849 0.85677 0.89253 1.24677 1.00489 0.97632 0.96429 1.69704 1.44912 1.19720 1.23925 0.86514 0.78612 0.78887 0.84310 1.20969 1.21733 1.20346 1.20586 0.88002 0.85098 0.76030 1.90732 1.13854 1.87156 1.48885 1.21326 0.97824 0.92838 1.00360 0.88241 1.21399 0.96989 0.91111 1.04066 1.20199 0.91934 0.98877 0.96918 1.22453 0.97238 0.90481 0.98129 1.77025 1.02246 1.22730 1.09303 1.46332 1.28193 1.07623 1.37347 0.71788 1.22050 0.99453 0.85917 1.00973 1.20027 1.01362 0.97213 1.05861 1.20188 0.98384 0.92194 0.97000 0.92416 0.90648 0.90823 0.90632 0.89789 0.95077 0.95643 0.80678 0.93053 0.90907 0.89514 0.89532 0.89520 0.80657 0.89691 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.78 59.85 0.53 1.16 16 2 N -0.61 -7.86 2.87 -181.57 -0.52 -8.38 16 3 C 0.10 1.65 5.52 -4.04 -0.02 1.63 16 4 C 0.15 2.97 6.58 -4.05 -0.03 2.94 16 5 N -0.75 -18.58 5.41 -59.91 -0.32 -18.91 16 6 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 7 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.90 13.97 55.49 0.78 -29.13 16 10 Si 0.89 22.46 27.73 -169.99 -4.71 17.75 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 14 C 0.52 7.10 7.06 -10.98 -0.08 7.02 16 15 O -0.53 -9.62 15.35 5.55 0.09 -9.54 16 16 C -0.10 -1.01 1.67 -91.56 -0.15 -1.16 16 17 H 0.10 0.88 7.37 -51.93 -0.38 0.50 16 18 C -0.10 -0.97 4.64 -26.52 -0.12 -1.10 16 19 C -0.04 -0.35 6.31 -27.57 -0.17 -0.52 16 20 C 0.09 0.85 7.10 -82.35 -0.58 0.27 16 21 N -0.29 -3.06 12.68 33.75 0.43 -2.63 16 22 N -0.49 -3.52 7.37 30.35 0.22 -3.29 16 23 H 0.44 1.72 8.96 -182.44 -1.64 0.09 16 24 C 0.06 0.40 11.95 -17.36 -0.21 0.20 16 25 C -0.23 -1.99 5.89 -104.98 -0.62 -2.61 16 26 C -0.04 -0.31 5.06 -27.60 -0.14 -0.45 16 27 H 0.06 0.37 7.17 -51.93 -0.37 0.00 16 28 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.07 0.51 5.89 -51.93 -0.31 0.20 16 30 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.36 8.55 5.53 -40.82 -0.23 8.33 16 35 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.09 0.96 7.68 -51.93 -0.40 0.56 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.08 0.53 4.87 -51.93 -0.25 0.27 16 42 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -37.30 336.91 -8.17 -45.47 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.34 Total: 3.46 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.85 Total: 0.13 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.58 Total: -62.34 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.30 -8.17 -45.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691555742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.010 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds