Wall clock time and date at job start Fri Apr 10 2020 14:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38318 * 119.96407 * 2 1 4 4 C 1.38279 * 120.15316 * 180.02562 * 3 2 1 5 5 C 1.38111 * 120.07853 * 0.02562 * 4 3 2 6 6 C 1.38919 * 119.92006 * 0.25902 * 5 4 3 7 7 N 1.39711 * 120.07333 * 179.70266 * 6 5 4 8 8 C 1.38706 * 119.99905 * 208.70835 * 7 6 5 9 9 N 1.30271 * 126.08810 * 5.63295 * 8 7 6 10 10 N 1.26105 * 117.70307 * 179.97438 * 9 8 7 11 11 C 1.30241 * 117.71975 * 359.97438 * 10 9 8 12 12 S 1.76208 * 126.09127 * 180.02562 * 11 10 9 13 13 C 1.76200 * 99.99823 * 359.97374 * 12 11 10 14 14 H 1.07999 * 119.99868 * 0.02562 * 13 12 11 15 15 C 1.38532 * 119.99987 * 179.97438 * 13 12 11 16 16 N 1.31729 * 119.99934 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46945 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47351 * 119.99581 * 17 15 13 20 20 H 1.48496 * 109.47139 * 239.99959 * 17 15 13 21 21 S 1.76477 * 107.82235 * 359.77699 * 11 10 9 22 22 C 1.38075 * 119.95970 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.46989 * 89.99600 * 1 2 3 24 24 H 1.08999 * 109.46880 * 209.99845 * 1 2 3 25 25 H 1.09002 * 109.47150 * 329.99607 * 1 2 3 26 26 H 1.07999 * 119.92163 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.95914 * 180.02562 * 4 3 2 28 28 H 1.07994 * 120.04082 * 179.97438 * 5 4 3 29 29 H 0.96994 * 120.00271 * 28.70805 * 7 6 5 30 30 H 0.97002 * 119.99743 * 180.02562 * 16 15 13 31 31 H 1.08002 * 120.04199 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5806 1.2029 -0.0005 5 6 4.2767 0.0100 -0.0016 6 6 3.5861 -1.1953 -0.0076 7 7 4.2871 -2.4038 -0.0150 8 6 3.7231 -3.5291 -0.5977 9 7 2.6011 -3.5705 -1.2582 10 7 2.2355 -4.6841 -1.7237 11 6 3.0063 -5.7121 -1.5108 12 16 2.7119 -7.3611 -2.0577 13 6 1.1782 -7.1364 -2.8955 14 1 0.7236 -6.1576 -2.9362 15 6 0.5561 -8.2149 -3.5028 16 7 1.1110 -9.4087 -3.4534 17 14 -1.0695 -7.9766 -4.3916 18 1 -1.4780 -6.5516 -4.3024 19 1 -0.9145 -8.3592 -5.8180 20 1 -2.1085 -8.8293 -3.7603 21 16 4.4018 -5.1581 -0.5833 22 6 2.1965 -1.1962 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6560 2.1325 0.0004 27 1 4.1168 2.1403 -0.0001 28 1 5.3567 0.0143 -0.0024 29 1 5.1681 -2.4559 0.3874 30 1 0.6755 -10.1638 -3.8790 31 1 1.6565 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003274190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:21 Heat of formation + Delta-G solvation = 65.933109 kcal Electronic energy + Delta-G solvation = -17468.393707 eV Core-core repulsion = 14581.084551 eV Total energy + Delta-G solvation = -2887.309155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.80280 -40.40357 -37.18965 -34.80192 -33.51251 -31.61757 -30.43177 -27.97954 -27.76015 -26.74515 -23.69218 -22.83269 -21.31167 -20.68093 -19.53696 -18.58974 -17.77238 -17.14673 -17.01459 -16.68224 -16.25804 -15.78896 -14.93410 -14.76753 -14.72171 -14.35381 -13.93524 -13.76841 -13.33284 -13.08797 -13.03090 -12.99058 -12.53098 -12.40622 -12.11279 -11.98212 -11.48883 -11.38863 -11.25020 -10.85139 -10.73699 -10.34644 -9.63432 -9.12631 -8.57478 -8.43153 -6.33744 -0.48859 -0.37424 0.20081 0.47166 0.56966 1.04084 1.36122 1.36632 1.52927 1.75534 2.04475 2.09754 2.84299 2.88366 2.98804 3.78373 3.95386 4.04618 4.22396 4.29523 4.46158 4.49276 4.70035 4.78126 4.91264 4.99966 5.22822 5.35456 5.42340 5.51931 5.67016 5.81138 6.10468 6.17478 6.35801 6.90502 7.84461 8.51509 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.004127 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.809658 B = 6783.170516 C = 8009.118787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.158 4.158 6 C 0.154 3.846 7 N -0.610 5.610 8 C 0.244 3.756 9 N -0.332 5.332 10 N -0.293 5.293 11 C -0.033 4.033 12 S 0.153 5.847 13 C -0.562 4.562 14 H 0.088 0.912 15 C 0.035 3.965 16 N -0.900 5.900 17 Si 0.995 3.005 18 H -0.272 1.272 19 H -0.264 1.264 20 H -0.264 1.264 21 S 0.107 5.893 22 C -0.161 4.161 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.160 0.840 28 H 0.152 0.848 29 H 0.438 0.562 30 H 0.283 0.717 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 17.858 8.574 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.075 4.075 3 C -0.166 4.166 4 C -0.107 4.107 5 C -0.180 4.180 6 C 0.056 3.944 7 N -0.244 5.244 8 C -0.134 4.134 9 N -0.176 5.176 10 N -0.135 5.135 11 C -0.421 4.421 12 S 0.387 5.613 13 C -0.712 4.712 14 H 0.106 0.894 15 C -0.172 4.172 16 N -0.535 5.535 17 Si 0.816 3.184 18 H -0.197 1.197 19 H -0.189 1.189 20 H -0.188 1.188 21 S 0.342 5.658 22 C -0.183 4.183 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.165 0.835 27 H 0.177 0.823 28 H 0.169 0.831 29 H 0.279 0.721 30 H 0.092 0.908 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.124 16.684 8.484 20.027 hybrid contribution -1.274 0.511 -0.583 1.491 sum 5.850 17.195 7.901 19.807 Atomic orbital electron populations 1.20814 0.90409 1.03195 1.02584 1.20016 0.96970 0.92595 0.97968 1.21314 0.94926 0.97486 1.02871 1.21301 0.93992 0.98183 0.97233 1.21072 1.01088 0.90007 1.05792 1.17940 0.91278 0.84921 1.00248 1.40969 1.20452 1.03391 1.59600 1.26707 0.94945 0.92261 0.99451 1.71180 1.13521 1.17731 1.15172 1.71444 1.26785 0.93610 1.21674 1.31939 0.96730 1.07436 1.06034 1.83251 1.26978 0.91600 1.59439 1.23471 1.07680 0.99669 1.40355 0.89372 1.25941 1.02182 0.93590 0.95505 1.70046 1.40534 1.00495 1.42429 0.84958 0.76640 0.78655 0.78143 1.19688 1.18866 1.18841 1.84829 1.23884 1.00692 1.56367 1.21087 0.93476 0.98842 1.04908 0.91269 0.92756 0.89057 0.83539 0.82254 0.83059 0.72064 0.90774 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 10.01 71.24 0.71 -1.79 16 2 C -0.07 -1.90 5.88 -19.88 -0.12 -2.01 16 3 C -0.15 -2.83 9.70 22.30 0.22 -2.61 16 4 C -0.09 -1.49 10.04 22.25 0.22 -1.27 16 5 C -0.16 -3.06 9.95 22.40 0.22 -2.83 16 6 C 0.15 4.11 6.43 38.22 0.25 4.35 16 7 N -0.61 -16.00 5.51 -186.12 -1.02 -17.02 16 8 C 0.24 8.60 8.17 179.12 1.46 10.06 16 9 N -0.33 -14.58 8.85 -55.84 -0.49 -15.08 16 10 N -0.29 -14.60 10.37 -54.88 -0.57 -15.17 16 11 C -0.03 -1.55 7.82 130.48 1.02 -0.53 16 12 S 0.15 7.82 21.89 -56.49 -1.24 6.59 16 13 C -0.56 -32.07 9.36 67.89 0.64 -31.44 16 14 H 0.09 5.25 6.91 -2.91 -0.02 5.23 16 15 C 0.03 1.90 5.49 84.78 0.47 2.37 16 16 N -0.90 -50.12 13.22 21.60 0.29 -49.83 16 17 Si 0.99 43.46 29.55 68.60 2.03 45.48 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 21 S 0.11 3.66 23.53 -56.49 -1.33 2.33 16 22 C -0.16 -5.01 8.46 22.40 0.19 -4.82 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 25 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 26 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 27 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 28 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.44 7.84 8.92 -92.71 -0.83 7.02 16 30 H 0.28 14.46 8.32 -92.71 -0.77 13.69 16 31 H 0.11 4.03 6.11 -2.91 -0.02 4.01 16 Total: -1.00 -68.71 304.27 3.29 -65.42 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.36 Total: 7.81 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 5.28 Total: -30.52 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -1.80 Total: -97.10 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 11.48 SS G_CDS: -2.57 Total: 8.92 kcal Total: -68.71 3.29 -65.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003274190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.350 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds