Wall clock time and date at job start Fri Apr 10 2020 14:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37101 * 120.00201 * 2 1 4 4 H 1.07999 * 119.99495 * 202.41276 * 3 2 1 5 5 C 1.38946 * 120.00185 * 22.40220 * 3 2 1 6 6 N 1.31418 * 119.99777 * 11.59701 * 5 3 2 7 7 Si 1.86794 * 120.00038 * 191.59498 * 5 3 2 8 8 H 1.48496 * 109.47248 * 60.00052 * 7 5 3 9 9 H 1.48505 * 109.47197 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47200 * 300.00184 * 7 5 3 11 11 C 1.34776 * 119.99834 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00010 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99780 * 359.97438 * 11 2 1 14 14 S 1.81400 * 109.47113 * 180.02562 * 13 11 2 15 15 C 1.81398 * 103.00181 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.64034 * 305.69714 * 15 14 13 17 17 C 1.53883 * 109.64822 * 185.27677 * 15 14 13 18 18 C 1.55049 * 106.62107 * 193.09716 * 17 15 14 19 19 S 1.83290 * 102.56816 * 42.43240 * 18 17 15 20 20 O 1.42097 * 109.35453 * 90.18549 * 19 18 17 21 21 O 1.42107 * 109.35035 * 223.25446 * 19 18 17 22 22 C 1.54156 * 109.54285 * 66.06184 * 15 14 13 23 23 H 1.08999 * 109.47063 * 272.17111 * 1 2 3 24 24 H 1.09005 * 109.46943 * 32.16530 * 1 2 3 25 25 H 1.08997 * 109.47409 * 152.16528 * 1 2 3 26 26 H 0.97002 * 119.99818 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.47175 * 60.00670 * 13 11 2 28 28 H 1.08999 * 109.47612 * 300.00308 * 13 11 2 29 29 H 1.09000 * 110.02211 * 312.38272 * 17 15 14 30 30 H 1.08997 * 110.03144 * 73.80300 * 17 15 14 31 31 H 1.08998 * 110.78610 * 160.69898 * 18 17 15 32 32 H 1.08996 * 110.78792 * 284.15575 * 18 17 15 33 33 H 1.08996 * 110.32205 * 266.60579 * 22 15 14 34 34 H 1.09010 * 110.31643 * 28.79529 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2225 -0.3566 5 6 1.5345 2.3452 0.4586 6 7 0.3896 2.2708 1.0994 7 14 2.3338 4.0077 0.1642 8 1 2.4818 4.2343 -1.2959 9 1 1.4833 5.0761 0.7477 10 1 3.6720 4.0344 0.8074 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4722 0.0017 14 16 2.5640 -3.8511 0.0029 15 6 1.4857 -5.3098 0.0034 16 1 0.7859 -5.2478 0.8369 17 6 2.3385 -6.5836 0.1378 18 6 1.4096 -7.7773 -0.2034 19 16 0.4849 -7.1593 -1.6603 20 8 1.1876 -7.5060 -2.8458 21 8 -0.8881 -7.5004 -1.5260 22 6 0.7056 -5.3749 -1.3246 23 1 -0.3633 0.0389 1.0269 24 1 -0.3633 0.8700 -0.5471 25 1 -0.3634 -0.9087 -0.4798 26 1 -0.0403 3.0791 1.4199 27 1 0.7583 -2.5306 -0.8881 28 1 0.7589 -2.5294 0.8919 29 1 3.1738 -6.5490 -0.5616 30 1 2.7091 -6.6789 1.1583 31 1 1.9937 -8.6604 -0.4620 32 1 0.7320 -7.9889 0.6237 33 1 -0.2633 -4.8870 -1.2188 34 1 1.2802 -4.9075 -2.1244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701318593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:02 Heat of formation + Delta-G solvation = -91.453657 kcal Electronic energy + Delta-G solvation = -19134.944695 eV Core-core repulsion = 15901.209066 eV Total energy + Delta-G solvation = -3233.735629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.48252 -37.28646 -36.69037 -36.17351 -34.79730 -31.85443 -30.53367 -29.20793 -26.25548 -25.66927 -24.30836 -21.97243 -19.34815 -19.06140 -17.34138 -17.15495 -16.98072 -16.17523 -15.97886 -15.67608 -15.01361 -14.71859 -14.51958 -14.45706 -14.17974 -13.75240 -12.80359 -12.71882 -12.62061 -12.50350 -12.37941 -12.25332 -12.04795 -11.67332 -11.60521 -11.42682 -11.27458 -11.02998 -10.92688 -10.68645 -10.47120 -10.33541 -9.64371 -9.11808 -8.62267 -7.82353 -7.49653 -6.41714 -3.98797 -0.25364 1.55206 2.21894 2.69808 3.12976 3.19656 3.23701 3.29344 3.70883 3.74300 4.01656 4.05885 4.16562 4.24971 4.50016 4.63788 4.73656 5.00722 5.11078 5.13471 5.29984 5.44936 5.49220 5.53336 5.55556 5.72331 6.16860 6.73978 7.08987 7.47344 7.98140 8.34980 9.05633 9.27744 9.81245 10.61974 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.003334 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.235918 B = 8396.044523 C = 8701.371884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.438 5.438 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.032 3.968 6 N -0.882 5.882 7 Si 0.930 3.070 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.456 3.544 12 O -0.572 6.572 13 C -0.112 4.112 14 S -0.146 6.146 15 C -0.086 4.086 16 H 0.107 0.893 17 C -0.097 4.097 18 C -0.583 4.583 19 S 2.389 3.611 20 O -0.934 6.934 21 O -0.941 6.941 22 C -0.592 4.592 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.269 0.731 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -16.321 -0.996 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.158 5.158 3 C -0.436 4.436 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.522 5.522 7 Si 0.756 3.244 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.243 3.757 12 O -0.456 6.456 13 C -0.264 4.264 14 S 0.082 5.918 15 C -0.216 4.216 16 H 0.126 0.874 17 C -0.137 4.137 18 C -0.714 4.714 19 S 2.571 3.429 20 O -0.932 6.932 21 O -0.939 6.939 22 C -0.723 4.723 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.929 -16.556 -1.636 16.748 hybrid contribution -1.052 1.384 0.663 1.860 sum -2.981 -15.172 -0.974 15.492 Atomic orbital electron populations 1.21566 0.80998 0.98903 1.01917 1.43499 1.05560 1.04403 1.62295 1.19646 0.99661 0.83464 1.40782 0.88186 1.25365 0.96462 1.00203 0.95110 1.69983 1.17292 1.29620 1.35255 0.85933 0.79065 0.80504 0.78850 1.19803 1.20865 1.19662 1.19123 0.87820 0.83651 0.85154 1.90564 1.13288 1.86227 1.55507 1.23620 1.00868 0.96293 1.05603 1.87478 1.11246 0.95652 1.97465 1.23654 1.00725 0.99675 0.97562 0.87449 1.21963 0.97462 0.87546 1.06704 1.30615 1.12944 1.07471 1.20345 1.09181 0.76076 0.79683 0.77921 1.93627 1.74848 1.81679 1.43002 1.93611 1.31322 1.81861 1.87058 1.31025 1.10335 1.24782 1.06140 0.92139 0.90950 0.95677 0.92047 0.88639 0.88471 0.88376 0.87428 0.84119 0.84320 0.84072 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.33 8.52 59.85 0.51 2.84 16 2 N -0.44 -10.90 3.02 -122.19 -0.37 -11.26 16 3 C -0.31 -8.40 9.29 -14.93 -0.14 -8.54 16 4 H 0.10 2.86 7.41 -52.49 -0.39 2.47 16 5 C 0.03 0.83 5.11 -17.47 -0.09 0.74 16 6 N -0.88 -22.82 10.62 55.50 0.59 -22.23 16 7 Si 0.93 20.33 29.57 -169.99 -5.03 15.30 16 8 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 C 0.46 10.76 7.65 -10.99 -0.08 10.67 16 12 O -0.57 -15.56 15.56 5.55 0.09 -15.47 16 13 C -0.11 -1.91 4.77 36.00 0.17 -1.74 16 14 S -0.15 -2.24 20.11 -107.50 -2.16 -4.40 16 15 C -0.09 -0.81 3.07 -25.67 -0.08 -0.89 16 16 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.10 -0.71 5.80 -25.19 -0.15 -0.85 16 18 C -0.58 -3.26 7.31 38.24 0.28 -2.98 16 19 S 2.39 20.50 6.10 -107.50 -0.66 19.84 16 20 O -0.93 -11.48 18.15 -57.73 -1.05 -12.52 16 21 O -0.94 -11.18 18.15 -57.73 -1.05 -12.22 16 22 C -0.59 -5.05 6.49 37.76 0.25 -4.81 16 23 H 0.06 1.33 7.54 -51.93 -0.39 0.94 16 24 H 0.07 1.62 7.06 -51.93 -0.37 1.26 16 25 H 0.02 0.42 6.36 -51.93 -0.33 0.09 16 26 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.10 1.40 7.32 -51.92 -0.38 1.02 16 28 H 0.10 1.49 8.11 -51.92 -0.42 1.07 16 29 H 0.10 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.15 1.36 7.84 -51.92 -0.41 0.96 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -36.01 309.38 -8.66 -44.66 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.36 Total: -0.80 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 0.67 Total: -5.55 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.22 Total: -33.50 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.01 Total: -40.22 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Atomic # 16 Polarization: 18.26 SS G_CDS: -2.82 Total: 15.44 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.01 -8.66 -44.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.789 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds