Wall clock time and date at job start Fri Apr 10 2020 14:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47239 * 269.99865 * 3 2 1 5 5 H 1.48500 * 109.47497 * 29.99907 * 3 2 1 6 6 H 1.48503 * 109.47285 * 149.99920 * 3 2 1 7 7 C 1.37880 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99982 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00297 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47515 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00332 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99777 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00242 * 180.02562 * 11 10 9 14 14 S 1.81404 * 109.46919 * 180.02562 * 13 11 10 15 15 C 1.81403 * 102.99788 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.01321 * 306.38041 * 15 14 13 17 17 C 1.53873 * 110.03104 * 184.99774 * 15 14 13 18 18 C 1.54161 * 108.70784 * 193.48320 * 17 15 14 19 19 S 1.82915 * 105.08684 * 27.90564 * 18 17 15 20 20 O 1.42105 * 109.35415 * 111.27793 * 19 18 17 21 21 O 1.42094 * 109.35722 * 244.34823 * 19 18 17 22 22 C 1.55409 * 110.08379 * 67.62577 * 15 14 13 23 23 H 0.97004 * 120.00439 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46824 * 60.00309 * 9 7 2 25 25 H 1.09002 * 109.47079 * 300.00998 * 9 7 2 26 26 H 0.97000 * 119.99617 * 0.02562 * 10 9 7 27 27 H 1.08990 * 109.47422 * 60.00008 * 13 11 10 28 28 H 1.09005 * 109.46774 * 299.99688 * 13 11 10 29 29 H 1.08999 * 109.64469 * 73.62151 * 17 15 14 30 30 H 1.09009 * 109.53380 * 313.26712 * 17 15 14 31 31 H 1.09004 * 110.31636 * 269.00471 * 18 17 15 32 32 H 1.08997 * 110.32172 * 146.80967 * 18 17 15 33 33 H 1.09003 * 110.76076 * 43.47482 * 22 15 14 34 34 H 1.09002 * 110.95933 * 279.91053 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3249 -2.8216 0.0016 12 8 6.1130 -1.8997 0.0012 13 6 5.8272 -4.2424 0.0024 14 16 7.6413 -4.2423 0.0034 15 6 8.0493 -6.0099 0.0051 16 1 7.5409 -6.5093 0.8297 17 6 9.5711 -6.1993 0.1320 18 6 9.9172 -7.6627 -0.2077 19 16 8.6051 -8.2071 -1.3600 20 8 9.1635 -8.3990 -2.6526 21 8 7.8481 -9.2461 -0.7548 22 6 7.6288 -6.6559 -1.3443 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 3.3695 -3.3125 0.0020 27 1 5.4641 -4.7567 -0.8873 28 1 5.4638 -4.7557 0.8927 29 1 9.8844 -5.9757 1.1517 30 1 10.0807 -5.5315 -0.5627 31 1 9.9056 -8.2736 0.6950 32 1 10.8925 -7.7186 -0.6910 33 1 7.9059 -6.0160 -2.1821 34 1 6.5603 -6.8712 -1.3573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706392019.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:19 Heat of formation + Delta-G solvation = -107.326238 kcal Electronic energy + Delta-G solvation = -18537.525145 eV Core-core repulsion = 15303.101229 eV Total energy + Delta-G solvation = -3234.423915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.04850 -37.45763 -36.88316 -36.34473 -34.46705 -32.50137 -30.88192 -30.05701 -27.45186 -25.88930 -22.51072 -21.97068 -20.17275 -19.27399 -17.85294 -17.39931 -17.13127 -16.31478 -16.07044 -15.96679 -15.37521 -15.32925 -14.96895 -14.67412 -14.21226 -14.06058 -13.28433 -13.11296 -12.91339 -12.78697 -12.58258 -12.49947 -12.41852 -12.25108 -12.00202 -11.71824 -11.31055 -11.05469 -10.94561 -10.83116 -10.04364 -10.02530 -9.60836 -9.51001 -8.86380 -8.34233 -7.86282 -6.28486 -4.31854 -0.44428 1.14378 1.98946 2.30406 2.95944 3.10467 3.21967 3.28962 3.36552 3.51045 3.76019 3.80295 3.96845 4.07339 4.27069 4.30522 4.37663 4.82559 4.93557 5.00832 5.03546 5.06944 5.12726 5.23610 5.29600 5.35389 6.67705 6.95899 7.03316 7.27234 7.97923 8.35988 8.61423 8.74071 9.30588 10.83290 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038658 B = 0.002836 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.122354 B = 9869.476877 C =10287.825625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.698 5.698 11 C 0.516 3.484 12 O -0.538 6.538 13 C -0.134 4.134 14 S -0.132 6.132 15 C -0.093 4.093 16 H 0.112 0.888 17 C -0.092 4.092 18 C -0.587 4.587 19 S 2.389 3.611 20 O -0.936 6.936 21 O -0.936 6.936 22 C -0.586 4.586 23 H 0.269 0.731 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.398 0.602 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.673 -16.141 0.375 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.347 5.347 11 C 0.299 3.701 12 O -0.417 6.417 13 C -0.286 4.286 14 S 0.096 5.904 15 C -0.223 4.223 16 H 0.130 0.870 17 C -0.131 4.131 18 C -0.718 4.718 19 S 2.571 3.429 20 O -0.933 6.933 21 O -0.933 6.933 22 C -0.718 4.718 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.232 0.768 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 19.572 -15.298 -0.091 24.841 hybrid contribution -0.939 0.147 0.419 1.038 sum 18.633 -15.151 0.328 24.018 Atomic orbital electron populations 1.69873 1.06232 1.27563 1.49075 1.24792 0.94802 0.99217 0.93748 0.86812 0.80559 0.83175 0.79126 1.19772 1.20808 1.18482 1.21057 0.88352 0.95300 1.53771 0.90204 1.19552 0.95380 0.78109 0.97023 1.46110 1.05061 1.11447 1.72113 1.19521 0.83675 0.88816 0.78125 1.90711 1.55135 1.45412 1.50423 1.23679 0.96776 1.00847 1.07250 1.87523 1.03852 1.01518 1.97507 1.24029 0.99838 1.00813 0.97616 0.86993 1.21632 0.91961 0.93162 1.06386 1.30493 1.18117 1.05971 1.17222 1.09189 0.78816 0.78056 0.76818 1.93627 1.77639 1.85152 1.36917 1.93632 1.69439 1.52069 1.78171 1.31165 1.14871 1.20812 1.04908 0.92146 0.95471 0.95923 0.76793 0.87174 0.87110 0.87807 0.88542 0.84240 0.83914 0.82996 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.82 16 7 C -0.55 -14.57 9.83 -34.44 -0.34 -14.91 16 8 H 0.08 2.21 7.84 -52.48 -0.41 1.79 16 9 C 0.22 5.24 4.50 -5.20 -0.02 5.22 16 10 N -0.70 -13.22 5.55 -61.47 -0.34 -13.56 16 11 C 0.52 9.10 7.85 -10.99 -0.09 9.01 16 12 O -0.54 -11.68 15.86 5.55 0.09 -11.59 16 13 C -0.13 -1.58 6.31 36.01 0.23 -1.35 16 14 S -0.13 -1.50 20.31 -107.50 -2.18 -3.68 16 15 C -0.09 -0.61 3.08 -25.00 -0.08 -0.69 16 16 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 17 C -0.09 -0.44 5.76 -25.67 -0.15 -0.59 16 18 C -0.59 -2.18 7.26 37.76 0.27 -1.91 16 19 S 2.39 15.80 6.09 -107.50 -0.66 15.14 16 20 O -0.94 -9.76 18.15 -57.73 -1.05 -10.80 16 21 O -0.94 -9.56 18.14 -57.73 -1.05 -10.61 16 22 C -0.59 -3.46 6.60 38.44 0.25 -3.20 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.68 7.20 -51.92 -0.37 0.31 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.40 6.46 8.32 -40.82 -0.34 6.12 16 27 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 1.04 8.14 -51.92 -0.42 0.61 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.45 8.10 -51.92 -0.42 0.03 16 31 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.15 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -37.53 315.39 -8.83 -46.36 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.49 Total: -0.80 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.02 Total: -6.33 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.43 Total: -38.75 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -2.01 Total: -33.01 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 14.30 SS G_CDS: -2.84 Total: 11.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.53 -8.83 -46.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706392019.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.963 kcal (2) G-P(sol) polarization free energy of solvation -37.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds