Wall clock time and date at job start Fri Apr 10 2020 14:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48508 * 109.46951 * 270.00252 * 3 2 1 5 5 H 1.48499 * 109.47347 * 30.00113 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00473 * 3 2 1 7 7 C 1.37878 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00038 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47527 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00409 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99932 * 180.02562 * 11 10 9 14 14 S 1.81404 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.81395 * 103.00326 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.53711 * 54.63456 * 15 14 13 17 17 C 1.53875 * 109.64748 * 175.00419 * 15 14 13 18 18 C 1.55045 * 106.62127 * 167.03620 * 17 15 14 19 19 S 1.83283 * 102.56843 * 317.55876 * 18 17 15 20 20 O 1.42105 * 109.35397 * 136.61647 * 19 18 17 21 21 O 1.42094 * 109.35872 * 269.68783 * 19 18 17 22 22 C 1.54648 * 109.56610 * 294.23942 * 15 14 13 23 23 H 0.97001 * 119.99979 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47561 * 59.99772 * 9 7 2 25 25 H 1.09006 * 109.46989 * 299.99981 * 9 7 2 26 26 H 0.97008 * 119.99109 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47917 * 59.99548 * 13 11 10 28 28 H 1.09001 * 109.46774 * 299.99238 * 13 11 10 29 29 H 1.08996 * 110.03083 * 47.74204 * 17 15 14 30 30 H 1.08998 * 110.06265 * 286.34343 * 17 15 14 31 31 H 1.09006 * 110.78616 * 199.29355 * 18 17 15 32 32 H 1.08996 * 110.79345 * 75.83497 * 18 17 15 33 33 H 1.08998 * 110.39190 * 93.34611 * 22 15 14 34 34 H 1.08994 * 110.44578 * 331.01770 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8833 -0.0044 12 8 0.5614 -5.1049 -0.0046 13 6 2.7331 -6.0287 -0.0048 14 16 1.8261 -7.5998 -0.0063 15 6 3.1528 -8.8369 -0.0075 16 1 3.8248 -8.6515 0.8304 17 6 2.5465 -10.2457 0.1173 18 6 3.6800 -11.2479 -0.2217 19 16 4.4842 -10.4652 -1.6708 20 8 5.8956 -10.5473 -1.5275 21 8 3.8654 -10.9317 -2.8618 22 6 3.9396 -8.7513 -1.3361 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 3.1568 -3.4353 -0.0029 27 1 3.3592 -5.9720 0.8856 28 1 3.3603 -5.9701 -0.8943 29 1 1.7229 -10.3614 -0.5871 30 1 2.1933 -10.4119 1.1350 31 1 3.2686 -12.2219 -0.4867 32 1 4.3802 -11.3355 0.6090 33 1 4.8026 -8.0949 -1.2248 34 1 3.2937 -8.3958 -2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706392020.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:20 Heat of formation + Delta-G solvation = -142.113004 kcal Electronic energy + Delta-G solvation = -18500.419020 eV Core-core repulsion = 15264.486637 eV Total energy + Delta-G solvation = -3235.932383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48226 -38.09009 -37.37272 -36.94579 -36.19717 -34.41348 -31.70738 -30.78104 -28.72485 -26.32348 -24.70302 -22.69759 -21.55956 -19.80896 -19.12236 -18.14265 -17.83451 -17.51866 -17.25691 -16.80118 -16.61256 -16.51995 -16.00322 -15.38787 -15.05299 -14.94199 -14.59319 -14.48644 -14.02683 -13.46471 -13.43119 -13.26960 -13.18345 -13.06678 -13.01830 -12.73972 -12.71844 -12.31034 -12.22032 -11.82196 -11.50266 -11.34725 -10.96724 -10.82474 -10.71105 -9.91097 -8.72567 -8.30756 -6.47597 -0.93673 0.38003 1.37803 1.43293 1.45188 1.56448 1.63874 1.72864 2.30422 2.53668 2.63045 3.04572 3.08868 3.31290 3.49894 3.64285 3.84588 3.97200 4.05850 4.09900 4.28694 4.51356 4.60514 4.80185 4.91598 5.01591 5.08173 5.21126 5.43777 5.63214 5.82046 6.62822 6.79621 7.21057 7.40223 8.81404 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.036331 B = 0.002733 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.501650 B =10242.006843 C =10689.636265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.701 5.701 11 C 0.507 3.493 12 O -0.587 6.587 13 C -0.114 4.114 14 S -0.209 6.209 15 C -0.065 4.065 16 H 0.141 0.859 17 C -0.105 4.105 18 C -0.551 4.551 19 S 2.394 3.606 20 O -0.977 6.977 21 O -0.981 6.981 22 C -0.592 4.592 23 H 0.269 0.731 24 H -0.012 1.012 25 H -0.011 1.011 26 H 0.411 0.589 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.650 -21.705 2.122 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.352 5.352 11 C 0.293 3.707 12 O -0.468 6.468 13 C -0.265 4.265 14 S 0.019 5.981 15 C -0.195 4.195 16 H 0.159 0.841 17 C -0.145 4.145 18 C -0.685 4.685 19 S 2.582 3.418 20 O -0.974 6.974 21 O -0.978 6.978 22 C -0.724 4.724 23 H 0.078 0.922 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.248 0.752 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.124 -22.229 1.369 24.895 hybrid contribution 0.943 1.805 0.349 2.067 sum 12.067 -20.424 1.718 23.785 Atomic orbital electron populations 1.70138 1.08308 1.28612 1.49904 1.26070 0.95758 1.03948 0.93855 0.85157 0.78535 0.76961 0.78565 1.19698 1.21072 1.17757 1.21615 0.94384 0.90457 1.52947 0.89596 1.18566 0.88654 0.84173 0.94222 1.46090 1.11435 1.05077 1.72566 1.20543 0.89219 0.84646 0.76306 1.90699 1.19049 1.85110 1.51942 1.23530 1.00389 0.92455 1.10092 1.87917 1.13491 0.98863 1.97807 1.23898 0.98833 0.97688 0.99092 0.84114 1.22083 0.97249 0.87254 1.07887 1.30467 1.09870 1.09823 1.18327 1.08808 0.75026 0.79806 0.78199 1.93568 1.30141 1.86048 1.87681 1.93575 1.78571 1.79621 1.46069 1.31072 1.12015 1.23706 1.05585 0.92233 0.99443 0.99293 0.75240 0.83819 0.84311 0.88885 0.85522 0.82085 0.81391 0.81867 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.98 41.41 29.54 68.60 2.03 43.43 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.56 -29.39 9.28 25.60 0.24 -29.15 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.25 5.43 85.63 0.46 14.71 16 10 N -0.70 -27.74 5.55 -466.80 -2.59 -30.33 16 11 C 0.51 18.93 7.85 87.66 0.69 19.61 16 12 O -0.59 -28.31 15.86 -3.03 -0.05 -28.35 16 13 C -0.11 -2.54 6.24 71.24 0.44 -2.09 16 14 S -0.21 -4.73 20.13 -56.49 -1.14 -5.87 16 15 C -0.07 -0.67 3.08 31.45 0.10 -0.57 16 16 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 17 C -0.11 -0.76 5.80 31.59 0.18 -0.58 16 18 C -0.55 -2.29 7.31 72.68 0.53 -1.76 16 19 S 2.39 29.36 6.09 -56.49 -0.34 29.02 16 20 O -0.98 -18.91 18.15 -127.47 -2.31 -21.22 16 21 O -0.98 -21.27 18.14 -127.47 -2.31 -23.58 16 22 C -0.59 -5.90 6.51 72.54 0.47 -5.43 16 23 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 26 H 0.41 12.84 8.32 -92.70 -0.77 12.06 16 27 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.14 2.25 8.05 -2.39 -0.02 2.23 16 29 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 30 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.16 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.15 1.75 7.86 -2.39 -0.02 1.73 16 Total: -1.00 -86.95 318.41 -2.51 -89.46 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.34 Total: 7.29 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 3.58 Total: -4.61 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.30 Total: -85.56 kcal Atomic # 8 Polarization: -68.49 SS G_CDS: -4.67 Total: -73.16 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 24.64 SS G_CDS: -1.48 Total: 23.15 kcal Total: -86.95 -2.51 -89.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706392020.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.653 kcal (2) G-P(sol) polarization free energy of solvation -86.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds