Wall clock time and date at job start Fri Apr 10 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48499 * 109.46964 * 270.00048 * 3 2 1 5 5 H 1.48504 * 109.47115 * 30.00459 * 3 2 1 6 6 H 1.48500 * 109.46829 * 150.00201 * 3 2 1 7 7 C 1.37869 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47011 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54243 * 68.37232 * 11 10 9 13 13 O 1.42104 * 110.54544 * 291.62870 * 11 10 9 14 14 N 1.65596 * 104.45184 * 180.02562 * 11 10 9 15 15 C 1.34774 * 120.00113 * 65.00020 * 14 11 10 16 16 O 1.21286 * 120.00114 * 359.97438 * 15 14 11 17 17 C 1.50705 * 120.00348 * 180.02562 * 15 14 11 18 18 H 1.09000 * 108.73197 * 57.04878 * 17 15 14 19 19 C 1.52930 * 108.88943 * 175.56124 * 17 15 14 20 20 C 1.55153 * 108.96125 * 150.89506 * 19 17 15 21 21 S 1.84215 * 100.95988 * 318.62164 * 20 19 17 22 22 C 1.53706 * 108.88289 * 298.54637 * 17 15 14 23 23 H 0.97005 * 120.00294 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47161 * 60.00291 * 9 7 2 25 25 H 1.08988 * 109.47134 * 299.99960 * 9 7 2 26 26 H 1.09004 * 109.46831 * 60.00199 * 10 9 7 27 27 H 1.08994 * 109.47512 * 300.00334 * 10 9 7 28 28 H 0.96997 * 120.00091 * 244.99971 * 14 11 10 29 29 H 1.08996 * 109.60597 * 270.82329 * 19 17 15 30 30 H 1.09000 * 109.60408 * 30.96491 * 19 17 15 31 31 H 1.08992 * 111.13707 * 76.47228 * 20 19 17 32 32 H 1.09001 * 111.13328 * 200.60968 * 20 19 17 33 33 H 1.09002 * 110.34362 * 355.25178 * 22 17 15 34 34 H 1.09000 * 110.34191 * 117.40200 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6636 -5.4187 -1.2394 13 8 0.6646 -5.4206 1.2345 14 7 2.5202 -6.3927 -0.0032 15 6 3.3468 -6.5131 1.0545 16 8 3.2251 -5.7718 2.0066 17 6 4.4229 -7.5681 1.0537 18 1 5.0564 -7.4214 0.1789 19 6 5.2743 -7.4079 2.3139 20 6 5.8432 -8.7937 2.7176 21 16 4.3788 -9.8723 2.4247 22 6 3.7620 -8.9528 0.9627 23 1 -0.4851 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8878 27 1 2.8712 -3.6040 -0.8922 28 1 2.6178 -6.9854 -0.7649 29 1 6.0955 -6.7192 2.1154 30 1 4.6590 -7.0152 3.1235 31 1 6.6751 -9.0797 2.0741 32 1 6.1387 -8.8068 3.7667 33 1 2.6769 -8.8583 1.0046 34 1 4.0625 -9.4565 0.0439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:15 Heat of formation + Delta-G solvation = -122.118981 kcal Electronic energy + Delta-G solvation = -19537.968630 eV Core-core repulsion = 16302.903253 eV Total energy + Delta-G solvation = -3235.065377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58784 -36.82582 -35.93185 -35.68465 -34.64046 -33.94005 -31.22768 -30.22339 -26.16594 -25.66417 -23.24446 -21.72111 -20.55694 -19.45098 -18.21067 -17.69633 -17.03498 -16.58343 -16.27651 -15.57458 -15.27660 -15.02997 -14.58197 -14.45774 -14.07594 -13.49056 -13.39744 -12.85908 -12.56400 -12.44742 -12.23725 -12.13828 -11.85196 -11.78624 -11.68205 -11.28336 -11.11664 -11.05381 -10.95810 -10.55150 -10.43501 -10.38678 -10.19800 -9.75518 -9.22533 -8.52762 -8.05431 -6.14926 -4.20770 0.41476 1.41288 1.79001 1.99088 2.60709 3.24899 3.31240 3.34291 3.75942 4.00681 4.04746 4.23801 4.34849 4.47496 4.54124 4.65404 4.74152 4.85210 5.01225 5.07665 5.20419 5.28656 5.45489 5.52735 5.65599 5.80087 6.39061 6.49904 7.23991 7.28713 7.30954 7.77696 8.13097 8.82067 9.44036 10.96166 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.003821 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.242692 B = 7325.873140 C = 8000.626522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.563 3.437 12 O -0.953 6.953 13 O -0.936 6.936 14 N -1.059 6.059 15 C 0.540 3.460 16 O -0.478 6.478 17 C -0.116 4.116 18 H 0.118 0.882 19 C -0.122 4.122 20 C -0.065 4.065 21 S -0.283 6.283 22 C -0.071 4.071 23 H 0.266 0.734 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.429 0.571 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.883 -18.094 -0.051 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.663 3.337 12 O -0.943 6.943 13 O -0.926 6.926 14 N -0.819 5.819 15 C 0.324 3.676 16 O -0.348 6.348 17 C -0.140 4.140 18 H 0.136 0.864 19 C -0.161 4.161 20 C -0.213 4.213 21 S -0.057 6.057 22 C -0.219 4.219 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.149 0.851 27 H 0.140 0.860 28 H 0.263 0.737 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.275 -18.671 1.260 21.848 hybrid contribution 1.425 1.817 -1.178 2.592 sum 12.699 -16.855 0.082 21.103 Atomic orbital electron populations 1.69952 1.06125 1.27285 1.49417 1.25063 0.94994 0.99566 0.94815 0.86441 0.79737 0.82733 0.78211 1.20453 1.20946 1.19717 1.20964 0.93080 0.89559 1.52372 0.91972 1.19000 0.92625 0.90309 0.99072 1.30336 1.13723 1.16122 1.10732 1.06817 0.75007 0.77294 0.74545 1.93596 1.70355 1.85286 1.45080 1.93608 1.70184 1.84302 1.44498 1.55467 1.49314 1.50489 1.26668 1.20317 0.81569 0.84628 0.81062 1.90920 1.69063 1.42686 1.32152 1.21979 0.96033 0.93156 1.02868 0.86446 1.22417 0.99788 0.96720 0.97220 1.24407 0.96786 0.94322 1.05826 1.88051 1.33624 1.44000 1.40038 1.23957 1.04358 0.94193 0.99434 0.92463 0.94739 0.94530 0.85077 0.86031 0.73652 0.88925 0.87761 0.88809 0.87013 0.87554 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 10 C -0.57 -11.06 5.82 37.16 0.22 -10.85 16 11 S 2.56 45.02 5.11 -107.50 -0.55 44.47 16 12 O -0.95 -18.33 18.08 -57.54 -1.04 -19.37 16 13 O -0.94 -20.14 17.04 -64.79 -1.10 -21.24 16 14 N -1.06 -12.34 5.45 31.22 0.17 -12.17 16 15 C 0.54 6.54 6.57 -10.98 -0.07 6.47 16 16 O -0.48 -7.80 13.43 -11.59 -0.16 -7.95 16 17 C -0.12 -0.91 2.99 -91.44 -0.27 -1.18 16 18 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 19 C -0.12 -0.97 5.56 -25.63 -0.14 -1.11 16 20 C -0.07 -0.43 7.53 38.30 0.29 -0.15 16 21 S -0.28 -2.68 23.24 -107.50 -2.50 -5.18 16 22 C -0.07 -0.54 6.84 37.52 0.26 -0.28 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 1.00 8.14 -51.94 -0.42 0.57 16 26 H 0.13 2.47 7.19 -51.92 -0.37 2.10 16 27 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 28 H 0.43 3.12 8.72 -34.47 -0.30 2.82 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.09 6.86 -51.93 -0.36 0.74 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.90 7.58 -51.93 -0.39 0.50 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -36.86 312.88 -9.37 -46.23 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.35 Total: -0.36 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -0.28 Total: -19.63 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.91 Total: -37.83 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -2.30 Total: -48.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 42.35 SS G_CDS: -3.05 Total: 39.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.86 -9.37 -46.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.887 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds