Wall clock time and date at job start Fri Apr 10 2020 14:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48499 * 109.46964 * 270.00048 * 3 2 1 5 5 H 1.48504 * 109.47115 * 30.00459 * 3 2 1 6 6 H 1.48500 * 109.46829 * 150.00201 * 3 2 1 7 7 C 1.37869 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47011 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54243 * 68.37232 * 11 10 9 13 13 O 1.42104 * 110.54544 * 291.62870 * 11 10 9 14 14 N 1.65596 * 104.45184 * 180.02562 * 11 10 9 15 15 C 1.34774 * 120.00113 * 65.00020 * 14 11 10 16 16 O 1.21286 * 120.00114 * 359.97438 * 15 14 11 17 17 C 1.50705 * 120.00348 * 180.02562 * 15 14 11 18 18 H 1.09000 * 108.73197 * 57.04878 * 17 15 14 19 19 C 1.52930 * 108.88943 * 175.56124 * 17 15 14 20 20 C 1.55153 * 108.96125 * 150.89506 * 19 17 15 21 21 S 1.84215 * 100.95988 * 318.62164 * 20 19 17 22 22 C 1.53706 * 108.88289 * 298.54637 * 17 15 14 23 23 H 0.97005 * 120.00294 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47161 * 60.00291 * 9 7 2 25 25 H 1.08988 * 109.47134 * 299.99960 * 9 7 2 26 26 H 1.09004 * 109.46831 * 60.00199 * 10 9 7 27 27 H 1.08994 * 109.47512 * 300.00334 * 10 9 7 28 28 H 0.96997 * 120.00091 * 244.99971 * 14 11 10 29 29 H 1.08996 * 109.60597 * 270.82329 * 19 17 15 30 30 H 1.09000 * 109.60408 * 30.96491 * 19 17 15 31 31 H 1.08992 * 111.13707 * 76.47228 * 20 19 17 32 32 H 1.09001 * 111.13328 * 200.60968 * 20 19 17 33 33 H 1.09002 * 110.34362 * 355.25178 * 22 17 15 34 34 H 1.09000 * 110.34191 * 117.40200 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6636 -5.4187 -1.2394 13 8 0.6646 -5.4206 1.2345 14 7 2.5202 -6.3927 -0.0032 15 6 3.3468 -6.5131 1.0545 16 8 3.2251 -5.7718 2.0066 17 6 4.4229 -7.5681 1.0537 18 1 5.0564 -7.4214 0.1789 19 6 5.2743 -7.4079 2.3139 20 6 5.8432 -8.7937 2.7176 21 16 4.3788 -9.8723 2.4247 22 6 3.7620 -8.9528 0.9627 23 1 -0.4851 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8878 27 1 2.8712 -3.6040 -0.8922 28 1 2.6178 -6.9854 -0.7649 29 1 6.0955 -6.7192 2.1154 30 1 4.6590 -7.0152 3.1235 31 1 6.6751 -9.0797 2.0741 32 1 6.1387 -8.8068 3.7667 33 1 2.6769 -8.8583 1.0046 34 1 4.0625 -9.4565 0.0439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:14 Heat of formation + Delta-G solvation = -150.525119 kcal Electronic energy + Delta-G solvation = -19539.200413 eV Core-core repulsion = 16302.903253 eV Total energy + Delta-G solvation = -3236.297159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59626 -38.35265 -37.26234 -36.67026 -35.97130 -35.70639 -33.19418 -30.82632 -27.66999 -26.82181 -24.19025 -23.55409 -21.35916 -20.75291 -19.38729 -18.99871 -18.39074 -17.65884 -17.48892 -16.89431 -16.64668 -16.55281 -16.11191 -15.33615 -15.13288 -14.74611 -14.49574 -14.10414 -13.96829 -13.79442 -13.40470 -13.28774 -13.14162 -12.95646 -12.90825 -12.85529 -12.78382 -12.33034 -12.27352 -12.05712 -11.86588 -11.76622 -11.43617 -11.09142 -10.92505 -10.66368 -8.74889 -8.28178 -6.42536 -1.04149 0.80565 0.88664 1.34813 1.38768 1.40218 1.42547 1.53691 2.36226 2.53923 2.89561 3.05513 3.14875 3.43322 3.61642 3.80637 3.94908 3.99812 4.02573 4.18994 4.25223 4.48691 4.60389 4.67362 4.79601 4.92318 5.17587 5.20920 5.21891 5.61497 5.65536 6.02160 6.34481 6.70300 7.27752 8.84283 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.003821 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.242692 B = 7325.873140 C = 8000.626522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.576 4.576 11 S 2.597 3.403 12 O -0.970 6.970 13 O -0.980 6.980 14 N -1.035 6.035 15 C 0.537 3.463 16 O -0.522 6.522 17 C -0.105 4.105 18 H 0.167 0.833 19 C -0.126 4.126 20 C -0.044 4.044 21 S -0.354 6.354 22 C -0.062 4.062 23 H 0.268 0.732 24 H 0.015 0.985 25 H 0.003 0.997 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.452 0.548 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 -18.715 -1.357 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.709 4.709 11 S 2.696 3.304 12 O -0.960 6.960 13 O -0.970 6.970 14 N -0.803 5.803 15 C 0.324 3.676 16 O -0.395 6.395 17 C -0.129 4.129 18 H 0.185 0.815 19 C -0.165 4.165 20 C -0.192 4.192 21 S -0.129 6.129 22 C -0.210 4.210 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.022 0.978 26 H 0.154 0.846 27 H 0.172 0.828 28 H 0.292 0.708 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.369 -19.308 -0.078 24.068 hybrid contribution 0.486 1.917 -0.750 2.115 sum 14.856 -17.391 -0.827 22.887 Atomic orbital electron populations 1.70097 1.08076 1.28429 1.50680 1.26124 0.95888 1.03918 0.94240 0.85284 0.78541 0.77474 0.78785 1.19196 1.20877 1.18325 1.21478 0.93980 0.90649 1.51839 0.90618 1.18841 0.93523 0.92848 0.96598 1.30220 1.12800 1.15321 1.12605 1.05461 0.74863 0.77006 0.73101 1.93567 1.71413 1.85536 1.45514 1.93555 1.71955 1.84941 1.46570 1.54858 1.48079 1.49402 1.27930 1.21235 0.81696 0.84809 0.79853 1.90920 1.70141 1.44711 1.33730 1.22142 0.94678 0.91179 1.04915 0.81538 1.22443 1.00030 0.97812 0.96235 1.24472 0.95689 0.92137 1.06860 1.88341 1.36426 1.45862 1.42251 1.24074 1.03598 0.93713 0.99588 0.92305 0.96669 0.97827 0.84645 0.82755 0.70769 0.86712 0.91029 0.85932 0.86586 0.88825 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.44 0.28 -56.60 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.98 43.25 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.58 -22.05 5.82 71.98 0.42 -21.63 16 11 S 2.60 90.72 5.11 -56.49 -0.29 90.43 16 12 O -0.97 -36.85 18.08 -127.65 -2.31 -39.15 16 13 O -0.98 -43.35 17.04 -120.71 -2.06 -45.41 16 14 N -1.04 -21.91 5.45 -173.53 -0.95 -22.85 16 15 C 0.54 11.94 6.57 87.66 0.58 12.52 16 16 O -0.52 -16.85 13.43 13.35 0.18 -16.67 16 17 C -0.11 -1.26 2.99 -11.32 -0.03 -1.30 16 18 H 0.17 0.48 8.14 -2.39 -0.02 0.46 16 19 C -0.13 -1.65 5.56 31.31 0.17 -1.48 16 20 C -0.04 -0.46 7.53 72.72 0.55 0.09 16 21 S -0.35 -6.18 23.24 -56.49 -1.31 -7.50 16 22 C -0.06 -0.74 6.84 72.22 0.49 -0.25 16 23 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.14 5.07 7.19 -2.39 -0.02 5.06 16 27 H 0.15 4.76 8.14 -2.39 -0.02 4.74 16 28 H 0.45 5.04 8.72 -96.75 -0.84 4.20 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.46 6.86 -2.39 -0.02 1.44 16 31 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.40 7.58 -2.39 -0.02 1.38 16 34 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -84.13 312.88 -1.12 -85.26 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.28 Total: 7.62 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.02 Total: -40.41 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -0.66 Total: -79.45 kcal Atomic # 8 Polarization: -97.05 SS G_CDS: -4.19 Total: -101.23 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 84.54 SS G_CDS: -1.60 Total: 82.93 kcal Total: -84.13 -1.12 -85.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.268 kcal (2) G-P(sol) polarization free energy of solvation -84.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds