Wall clock time and date at job start Fri Apr 10 2020 14:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.45705 * 2 1 4 4 C 1.53659 * 109.59150 * 120.22109 * 2 1 3 5 5 S 1.81665 * 108.90636 * 178.35168 * 4 2 1 6 6 O 1.42093 * 108.65245 * 189.98336 * 5 4 2 7 7 O 1.42102 * 108.64906 * 58.68110 * 5 4 2 8 8 C 1.81666 * 101.38564 * 304.33446 * 5 4 2 9 9 C 1.53178 * 108.95397 * 55.56179 * 8 5 4 10 10 N 1.46388 * 109.46210 * 240.01666 * 2 1 3 11 11 C 1.34775 * 119.70100 * 355.71981 * 10 2 1 12 12 O 1.21278 * 119.99974 * 353.97177 * 11 10 2 13 13 C 1.50699 * 119.99910 * 173.97408 * 11 10 2 14 14 S 1.81004 * 109.47208 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00224 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99516 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99878 * 179.72617 * 15 14 13 18 18 N 1.31622 * 120.00004 * 0.27510 * 17 15 14 19 19 Si 1.86799 * 119.99813 * 180.27382 * 17 15 14 20 20 H 1.48499 * 109.47312 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47230 * 119.99964 * 19 17 15 22 22 H 1.48498 * 109.47306 * 240.00083 * 19 17 15 23 23 H 1.09002 * 109.47007 * 185.32626 * 1 2 3 24 24 H 1.08996 * 109.47035 * 305.32773 * 1 2 3 25 25 H 1.08998 * 109.47093 * 65.32792 * 1 2 3 26 26 H 1.09013 * 109.66549 * 58.47415 * 4 2 1 27 27 H 1.08997 * 109.58319 * 298.18571 * 4 2 1 28 28 H 1.09009 * 109.55683 * 295.71646 * 8 5 4 29 29 H 1.09006 * 109.55872 * 175.40086 * 8 5 4 30 30 H 1.08995 * 109.46766 * 181.73091 * 9 8 5 31 31 H 1.09000 * 109.45897 * 61.74590 * 9 8 5 32 32 H 1.09006 * 109.47052 * 60.00274 * 13 11 10 33 33 H 1.08996 * 109.47562 * 299.99773 * 13 11 10 34 34 H 0.97006 * 119.99574 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0453 -0.7286 1.2509 5 16 3.8611 -0.7606 1.2074 6 8 4.3251 -1.6279 2.2329 7 8 4.3381 0.5771 1.1577 8 6 4.1676 -1.5468 -0.4014 9 6 3.4504 -0.7448 -1.4917 10 7 2.0178 -0.6898 -1.1955 11 6 1.1396 -1.2745 -2.0341 12 8 -0.0367 -1.3234 -1.7428 13 6 1.6192 -1.8676 -3.3338 14 16 0.2138 -2.5729 -4.2302 15 6 1.0384 -3.1781 -5.6649 16 1 2.1059 -3.0505 -5.7683 17 6 0.3171 -3.8243 -6.6592 18 7 -0.9837 -3.9802 -6.5329 19 14 1.1926 -4.4727 -8.1766 20 1 2.6436 -4.1730 -8.0769 21 1 0.9964 -5.9416 -8.2714 22 1 0.6338 -3.8195 -9.3875 23 1 -0.3633 -1.0232 0.0954 24 1 -0.3633 0.5942 0.8384 25 1 -0.3633 0.4290 -0.9338 26 1 1.6626 -1.7493 1.2646 27 1 1.7108 -0.2016 2.1444 28 1 3.7849 -2.5674 -0.3875 29 1 5.2388 -1.5598 -0.6030 30 1 3.6034 -1.2269 -2.4572 31 1 3.8540 0.2672 -1.5230 32 1 2.3487 -2.6511 -3.1283 33 1 2.0830 -1.0890 -3.9393 34 1 -1.4877 -4.4321 -7.2277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320952474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:33 Heat of formation + Delta-G solvation = -79.376885 kcal Electronic energy + Delta-G solvation = -19783.778418 eV Core-core repulsion = 16550.566478 eV Total energy + Delta-G solvation = -3233.211940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.45083 -37.38834 -36.47884 -36.31093 -33.90311 -32.51673 -30.92210 -28.96862 -27.62027 -25.57091 -24.09184 -22.68208 -19.70625 -18.96538 -17.80803 -17.01169 -16.84197 -16.52078 -16.20388 -16.11935 -15.64622 -14.88264 -14.32993 -14.14344 -13.70385 -13.45005 -13.33018 -12.82658 -12.75827 -12.69841 -12.50698 -12.38645 -12.30304 -12.16087 -12.00335 -11.46403 -11.13540 -11.09893 -11.05966 -10.83507 -10.50151 -9.88587 -9.15822 -8.97000 -8.88897 -8.34560 -6.61039 -6.30563 -4.02176 -0.30828 2.32434 2.55870 2.73657 3.15867 3.16100 3.24770 3.32396 3.40929 3.66970 3.99199 4.11256 4.26977 4.42726 4.60969 4.68754 4.77921 4.96958 5.05369 5.19388 5.25484 5.34104 5.42610 5.48582 5.68720 5.71167 5.95648 6.06436 6.19777 6.59100 7.15696 7.51387 8.26348 8.29026 9.15356 10.76867 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.003978 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.999006 B = 7036.622606 C = 7650.217951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.158 3.842 3 H 0.096 0.904 4 C -0.619 4.619 5 S 2.418 3.582 6 O -0.942 6.942 7 O -0.936 6.936 8 C -0.624 4.624 9 C 0.117 3.883 10 N -0.633 5.633 11 C 0.537 3.463 12 O -0.494 6.494 13 C -0.159 4.159 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.321 7.220 13.057 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.113 0.887 4 C -0.750 4.750 5 S 2.601 3.399 6 O -0.939 6.939 7 O -0.933 6.933 8 C -0.754 4.754 9 C -0.008 4.008 10 N -0.370 5.370 11 C 0.325 3.675 12 O -0.367 6.367 13 C -0.309 4.309 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.104 0.896 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.157 0.843 27 H 0.162 0.838 28 H 0.158 0.842 29 H 0.165 0.835 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.017 7.376 14.049 17.778 hybrid contribution 1.535 -0.837 -1.804 2.512 sum 9.552 6.540 12.245 16.850 Atomic orbital electron populations 1.22274 0.90532 1.04444 1.01857 1.20940 0.98629 0.94619 0.80433 0.88667 1.30818 1.25410 1.11405 1.07344 1.07963 0.78519 0.75948 0.77463 1.93601 1.78819 1.67848 1.53678 1.93593 1.78279 1.34809 1.86640 1.30612 1.10852 1.13402 1.20562 1.21339 0.79411 1.01015 0.98990 1.48242 1.06606 1.57243 1.24933 1.20417 0.85804 0.76647 0.84609 1.90781 1.16893 1.54785 1.74195 1.23684 1.07144 1.03522 0.96583 1.85398 1.06077 1.72580 1.19138 1.22882 0.96456 1.43647 1.05508 0.90841 1.24986 0.94916 0.95240 0.98336 1.70016 1.05971 1.40116 1.34078 0.86114 0.79418 0.78605 0.81349 1.19604 1.20531 1.20503 0.89602 0.93781 0.90323 0.84269 0.83802 0.84198 0.83514 0.86605 0.88702 0.89064 0.88877 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 7.57 37.16 0.28 -1.34 16 2 C 0.16 1.63 3.31 -67.65 -0.22 1.40 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.62 -5.02 5.86 37.50 0.22 -4.80 16 5 S 2.42 21.16 5.29 -107.50 -0.57 20.59 16 6 O -0.94 -11.49 18.10 -57.81 -1.05 -12.53 16 7 O -0.94 -10.60 18.02 -57.81 -1.04 -11.65 16 8 C -0.62 -4.45 6.55 37.25 0.24 -4.20 16 9 C 0.12 1.02 6.11 -4.01 -0.02 0.99 16 10 N -0.63 -7.38 2.79 -165.78 -0.46 -7.84 16 11 C 0.54 8.70 7.50 -10.99 -0.08 8.61 16 12 O -0.49 -9.47 11.14 5.56 0.06 -9.41 16 13 C -0.16 -2.87 4.48 36.01 0.16 -2.70 16 14 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 15 C -0.54 -14.56 9.50 30.94 0.29 -14.27 16 16 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 19 Si 0.92 20.68 29.55 -169.99 -5.02 15.65 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H 0.09 1.21 6.57 -51.93 -0.34 0.87 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.13 6.77 -51.93 -0.35 0.77 16 26 H 0.14 1.09 8.14 -51.92 -0.42 0.66 16 27 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.14 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.15 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.12 0.98 5.73 -51.93 -0.30 0.69 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.49 7.61 -51.91 -0.40 1.09 16 33 H 0.09 1.54 7.93 -51.92 -0.41 1.13 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -36.29 304.10 -8.50 -44.79 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.30 Total: -1.61 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 0.77 Total: -14.35 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.27 Total: -32.38 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -2.03 Total: -33.58 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 19.67 SS G_CDS: -2.78 Total: 16.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.29 -8.50 -44.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320952474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.583 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds