Wall clock time and date at job start Fri Apr 10 2020 14:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.45705 * 2 1 4 4 C 1.53659 * 109.59150 * 120.22109 * 2 1 3 5 5 S 1.81665 * 108.90636 * 178.35168 * 4 2 1 6 6 O 1.42093 * 108.65245 * 189.98336 * 5 4 2 7 7 O 1.42102 * 108.64906 * 58.68110 * 5 4 2 8 8 C 1.81666 * 101.38564 * 304.33446 * 5 4 2 9 9 C 1.53178 * 108.95397 * 55.56179 * 8 5 4 10 10 N 1.46388 * 109.46210 * 240.01666 * 2 1 3 11 11 C 1.34775 * 119.70100 * 355.71981 * 10 2 1 12 12 O 1.21278 * 119.99974 * 353.97177 * 11 10 2 13 13 C 1.50699 * 119.99910 * 173.97408 * 11 10 2 14 14 S 1.81004 * 109.47208 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00224 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99516 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99878 * 179.72617 * 15 14 13 18 18 N 1.31622 * 120.00004 * 0.27510 * 17 15 14 19 19 Si 1.86799 * 119.99813 * 180.27382 * 17 15 14 20 20 H 1.48499 * 109.47312 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47230 * 119.99964 * 19 17 15 22 22 H 1.48498 * 109.47306 * 240.00083 * 19 17 15 23 23 H 1.09002 * 109.47007 * 185.32626 * 1 2 3 24 24 H 1.08996 * 109.47035 * 305.32773 * 1 2 3 25 25 H 1.08998 * 109.47093 * 65.32792 * 1 2 3 26 26 H 1.09013 * 109.66549 * 58.47415 * 4 2 1 27 27 H 1.08997 * 109.58319 * 298.18571 * 4 2 1 28 28 H 1.09009 * 109.55683 * 295.71646 * 8 5 4 29 29 H 1.09006 * 109.55872 * 175.40086 * 8 5 4 30 30 H 1.08995 * 109.46766 * 181.73091 * 9 8 5 31 31 H 1.09000 * 109.45897 * 61.74590 * 9 8 5 32 32 H 1.09006 * 109.47052 * 60.00274 * 13 11 10 33 33 H 1.08996 * 109.47562 * 299.99773 * 13 11 10 34 34 H 0.97006 * 119.99574 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0453 -0.7286 1.2509 5 16 3.8611 -0.7606 1.2074 6 8 4.3251 -1.6279 2.2329 7 8 4.3381 0.5771 1.1577 8 6 4.1676 -1.5468 -0.4014 9 6 3.4504 -0.7448 -1.4917 10 7 2.0178 -0.6898 -1.1955 11 6 1.1396 -1.2745 -2.0341 12 8 -0.0367 -1.3234 -1.7428 13 6 1.6192 -1.8676 -3.3338 14 16 0.2138 -2.5729 -4.2302 15 6 1.0384 -3.1781 -5.6649 16 1 2.1059 -3.0505 -5.7683 17 6 0.3171 -3.8243 -6.6592 18 7 -0.9837 -3.9802 -6.5329 19 14 1.1926 -4.4727 -8.1766 20 1 2.6436 -4.1730 -8.0769 21 1 0.9964 -5.9416 -8.2714 22 1 0.6338 -3.8195 -9.3875 23 1 -0.3633 -1.0232 0.0954 24 1 -0.3633 0.5942 0.8384 25 1 -0.3633 0.4290 -0.9338 26 1 1.6626 -1.7493 1.2646 27 1 1.7108 -0.2016 2.1444 28 1 3.7849 -2.5674 -0.3875 29 1 5.2388 -1.5598 -0.6030 30 1 3.6034 -1.2269 -2.4572 31 1 3.8540 0.2672 -1.5230 32 1 2.3487 -2.6511 -3.1283 33 1 2.0830 -1.0890 -3.9393 34 1 -1.4877 -4.4321 -7.2277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320952474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:32 Heat of formation + Delta-G solvation = -107.354624 kcal Electronic energy + Delta-G solvation = -19784.991624 eV Core-core repulsion = 16550.566478 eV Total energy + Delta-G solvation = -3234.425146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54838 -38.24737 -37.49808 -37.12389 -34.76542 -34.57394 -31.86808 -30.14730 -28.53415 -27.63108 -24.85298 -23.65086 -20.81034 -19.92721 -19.40529 -18.06971 -17.66486 -17.42686 -17.19367 -16.96840 -16.87027 -16.55452 -15.87973 -15.20192 -14.92106 -14.49099 -14.32810 -14.13752 -13.82220 -13.52193 -13.44532 -13.27049 -13.22548 -13.11318 -13.08688 -12.93656 -12.89410 -12.58200 -12.37188 -11.84133 -11.69224 -11.22656 -11.15091 -10.23261 -10.11757 -9.94943 -8.64602 -8.34377 -6.11173 -0.99936 1.24467 1.41695 1.45147 1.50303 1.56186 1.66355 1.93340 2.27747 2.65381 2.93581 3.00783 3.19178 3.30703 3.52709 3.77365 3.85191 4.02364 4.10311 4.14456 4.29931 4.39270 4.49512 4.65368 4.70557 4.80223 4.81682 5.07900 5.27164 5.43595 5.59574 6.08119 6.20926 7.08143 7.09261 8.74790 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.003978 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.999006 B = 7036.622606 C = 7650.217951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.119 0.881 4 C -0.614 4.614 5 S 2.438 3.562 6 O -0.978 6.978 7 O -0.961 6.961 8 C -0.612 4.612 9 C 0.104 3.896 10 N -0.621 5.621 11 C 0.537 3.463 12 O -0.533 6.533 13 C -0.136 4.136 14 S -0.149 6.149 15 C -0.544 4.544 16 H 0.084 0.916 17 C 0.015 3.985 18 N -0.911 5.911 19 Si 0.995 3.005 20 H -0.256 1.256 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.142 0.858 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.177 0.823 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 7.659 13.158 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.049 3.951 3 H 0.137 0.863 4 C -0.745 4.745 5 S 2.623 3.377 6 O -0.975 6.975 7 O -0.958 6.958 8 C -0.744 4.744 9 C -0.019 4.019 10 N -0.357 5.357 11 C 0.325 3.675 12 O -0.409 6.409 13 C -0.287 4.287 14 S 0.078 5.922 15 C -0.692 4.692 16 H 0.102 0.898 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.817 3.183 20 H -0.179 1.179 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.161 0.839 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.195 0.805 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.648 7.844 14.198 19.403 hybrid contribution 0.763 -0.896 -1.745 2.105 sum 11.411 6.948 12.453 18.264 Atomic orbital electron populations 1.22116 0.92127 1.03120 1.01427 1.21119 0.97442 0.95970 0.80538 0.86324 1.30779 1.24791 1.11782 1.07175 1.07271 0.78073 0.74869 0.77465 1.93561 1.79600 1.68518 1.55860 1.93559 1.78870 1.36167 1.87219 1.30537 1.12733 1.13191 1.17953 1.21710 0.77440 1.02997 0.99776 1.48165 1.07400 1.55725 1.24368 1.20132 0.85757 0.76974 0.84624 1.90799 1.18629 1.56536 1.74915 1.23547 1.03859 1.04309 0.96952 1.85561 1.11949 1.73844 1.20800 1.23235 0.96910 1.43277 1.05751 0.89796 1.26062 0.95595 0.95453 1.01854 1.70178 1.07871 1.41382 1.35375 0.84957 0.78790 0.77762 0.76775 1.17911 1.20161 1.20156 0.92016 0.91265 0.93051 0.83947 0.81513 0.83338 0.80506 0.85964 0.86243 0.86861 0.87040 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 7.57 71.98 0.55 -2.54 16 2 C 0.15 2.81 3.31 45.24 0.15 2.96 16 3 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.61 -8.47 5.86 72.20 0.42 -8.05 16 5 S 2.44 36.25 5.29 -56.49 -0.30 35.95 16 6 O -0.98 -22.05 18.10 -127.39 -2.31 -24.36 16 7 O -0.96 -19.18 18.02 -127.39 -2.30 -21.47 16 8 C -0.61 -6.45 6.55 72.04 0.47 -5.98 16 9 C 0.10 1.42 6.11 86.46 0.53 1.95 16 10 N -0.62 -13.09 2.79 -796.80 -2.23 -15.31 16 11 C 0.54 16.99 7.50 87.66 0.66 17.65 16 12 O -0.53 -20.94 11.14 -3.02 -0.03 -20.97 16 13 C -0.14 -4.74 4.48 71.24 0.32 -4.42 16 14 S -0.15 -7.72 20.57 -56.49 -1.16 -8.88 16 15 C -0.54 -29.49 9.50 67.95 0.65 -28.84 16 16 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 17 C 0.02 0.83 5.49 84.86 0.47 1.30 16 18 N -0.91 -54.34 13.22 21.65 0.29 -54.05 16 19 Si 0.99 42.07 29.55 68.60 2.03 44.10 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 23 H 0.06 1.77 6.57 -2.39 -0.02 1.75 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.50 6.77 -2.39 -0.02 1.48 16 26 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.18 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.12 1.59 5.73 -2.39 -0.01 1.58 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 3.44 7.61 -2.39 -0.02 3.42 16 33 H 0.11 3.47 7.93 -2.40 -0.02 3.45 16 34 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -81.16 304.10 -0.70 -81.85 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.11 Total: 9.11 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.21 Total: -25.97 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.94 Total: -69.37 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -4.64 Total: -66.80 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 28.53 SS G_CDS: -1.46 Total: 27.07 kcal Total: -81.16 -0.70 -81.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320952474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.504 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds