Wall clock time and date at job start Fri Apr 10 2020 14:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48492 * 109.47324 * 240.00230 * 3 2 1 5 5 H 1.48500 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46623 * 120.00485 * 3 2 1 7 7 C 1.38754 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99677 * 179.97438 * 7 2 1 9 9 O 1.34921 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.34312 * 116.99600 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00291 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99885 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47101 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99719 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00007 * 359.97438 * 14 13 12 16 16 C 1.47613 * 119.99818 * 179.97438 * 14 13 12 17 17 C 1.39697 * 120.08204 * 0.02562 * 16 14 13 18 18 C 1.37769 * 120.00069 * 179.73200 * 17 16 14 19 19 C 1.38854 * 120.22163 * 0.48311 * 18 17 16 20 20 C 1.39542 * 120.05378 * 359.51873 * 19 18 17 21 21 C 1.38124 * 119.98069 * 0.24188 * 20 19 18 22 22 O 1.36538 * 108.59744 * 180.23537 * 20 19 18 23 23 C 1.43977 * 105.44817 * 342.69639 * 22 20 19 24 24 O 1.36365 * 131.35631 * 179.82774 * 19 18 17 25 25 H 0.97003 * 119.99452 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46910 * 59.98867 * 12 10 9 27 27 H 1.08999 * 109.46594 * 299.99707 * 12 10 9 28 28 H 0.96996 * 120.00588 * 359.97438 * 13 12 10 29 29 H 1.08004 * 120.00017 * 359.97438 * 17 16 14 30 30 H 1.08006 * 119.88802 * 180.30810 * 18 17 16 31 31 H 1.07999 * 120.04895 * 180.02562 * 21 20 19 32 32 H 1.09006 * 110.55945 * 268.60888 * 23 22 20 33 33 H 1.09000 * 110.56746 * 145.75573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1022 1.6965 -1.2124 5 1 1.2835 2.7465 0.0006 6 1 3.1023 1.6962 1.2125 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 7 2.3898 -5.9015 -0.0016 14 6 2.0076 -7.1939 -0.0017 15 8 0.8255 -7.4783 -0.0008 16 6 3.0242 -8.2642 -0.0027 17 6 4.3829 -7.9393 -0.0032 18 6 5.3303 -8.9395 0.0014 19 6 4.9399 -10.2720 -0.0037 20 6 3.5843 -10.6031 -0.0033 21 6 2.6300 -9.6046 -0.0029 22 8 3.4684 -11.9635 -0.0035 23 6 4.7558 -12.4581 -0.4168 24 8 5.6689 -11.4245 -0.0039 25 1 -0.4849 0.8401 0.0004 26 1 0.7583 -4.9295 -0.8913 27 1 0.7578 -4.9300 0.8887 28 1 3.3329 -5.6746 -0.0019 29 1 4.6906 -6.9040 -0.0031 30 1 6.3803 -8.6863 0.0061 31 1 1.5805 -9.8596 -0.0022 32 1 4.7871 -12.5869 -1.4988 33 1 4.9858 -13.3963 0.0883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006107406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:08 Heat of formation + Delta-G solvation = -140.730813 kcal Electronic energy + Delta-G solvation = -21923.914256 eV Core-core repulsion = 18109.844987 eV Total energy + Delta-G solvation = -3814.069269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.52650 -40.07603 -39.01939 -37.49248 -36.66816 -35.66094 -34.14867 -32.26538 -31.08305 -30.71844 -28.09555 -26.23267 -25.18133 -23.87545 -23.15917 -20.98972 -20.33256 -18.80605 -18.28135 -17.87480 -17.71412 -17.16301 -16.43043 -15.85168 -15.65860 -15.61243 -14.81078 -14.58203 -14.49646 -14.43777 -14.20535 -14.05601 -13.42912 -13.37025 -13.20106 -13.14551 -12.50013 -12.23519 -11.68234 -11.49462 -11.25957 -11.19617 -10.53377 -10.53096 -10.08987 -9.93259 -9.28745 -9.26795 -9.04411 -8.67719 -8.45144 -6.50644 -4.19846 0.41216 0.88225 2.27554 2.67102 2.88346 3.03577 3.12034 3.16968 3.24982 3.35591 3.53295 3.89938 4.07713 4.27583 4.42845 4.50482 4.59124 4.72609 4.74288 4.89310 5.03044 5.16160 5.61191 5.71260 5.76420 5.77275 5.85508 5.90043 5.98043 6.21053 6.62517 6.71831 7.28354 7.54922 7.82288 8.19117 8.51656 8.96844 9.67378 10.66409 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.044724 B = 0.002637 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.917993 B =10616.969089 C =11214.943651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.386 4.386 8 H 0.098 0.902 9 O -0.203 6.203 10 C 0.388 3.612 11 O -0.559 6.559 12 C 0.136 3.864 13 N -0.706 5.706 14 C 0.564 3.436 15 O -0.536 6.536 16 C -0.120 4.120 17 C -0.070 4.070 18 C -0.106 4.106 19 C 0.055 3.945 20 C 0.020 3.980 21 C -0.040 4.040 22 O -0.306 6.306 23 C 0.212 3.788 24 O -0.307 6.307 25 H 0.272 0.728 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.411 0.589 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -20.281 -1.088 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.161 4.161 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.462 4.462 8 H 0.116 0.884 9 O -0.109 6.109 10 C 0.235 3.765 11 O -0.457 6.457 12 C 0.012 3.988 13 N -0.362 5.362 14 C 0.350 3.650 15 O -0.415 6.415 16 C -0.123 4.123 17 C -0.088 4.088 18 C -0.125 4.125 19 C 0.010 3.990 20 C -0.024 4.024 21 C -0.060 4.060 22 O -0.222 6.222 23 C 0.101 3.899 24 O -0.222 6.222 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.250 0.750 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.104 0.896 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.426 -20.438 -0.985 22.129 hybrid contribution 0.953 0.631 -0.061 1.145 sum 9.379 -19.807 -1.045 21.940 Atomic orbital electron populations 1.69989 1.06055 1.28112 1.45383 1.25389 0.95860 0.98992 0.95883 0.85692 0.78620 0.79158 0.79396 1.19395 1.20292 1.19395 1.21209 0.92432 0.79496 1.53039 0.88449 1.83852 1.39153 1.13236 1.74646 1.22894 0.86671 0.87351 0.79583 1.90531 1.15515 1.87663 1.52021 1.20445 0.90243 0.82833 1.05320 1.45637 1.11594 1.04663 1.74308 1.17836 0.88085 0.82090 0.76961 1.90804 1.17556 1.83073 1.50037 1.19566 0.93469 0.92728 1.06569 1.21233 0.91118 0.99895 0.96596 1.20007 1.01306 0.87221 1.03973 1.20096 0.88712 0.88813 1.01340 1.19565 0.93464 0.83729 1.05658 1.20031 0.99709 0.88484 0.97741 1.87406 1.33898 1.15898 1.85006 1.25678 0.72028 0.91902 1.00326 1.87344 1.35381 1.15118 1.84396 0.91775 0.88013 0.88004 0.74995 0.83417 0.83814 0.83161 0.89626 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.95 20.61 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.97 9.65 30.92 0.30 -10.68 16 8 H 0.10 2.75 6.86 -52.49 -0.36 2.39 16 9 O -0.20 -5.58 9.75 -20.71 -0.20 -5.78 16 10 C 0.39 8.94 7.97 36.01 0.29 9.23 16 11 O -0.56 -13.52 14.90 -19.05 -0.28 -13.80 16 12 C 0.14 2.45 6.27 -5.19 -0.03 2.42 16 13 N -0.71 -10.98 5.48 -62.50 -0.34 -11.33 16 14 C 0.56 8.55 7.76 -12.43 -0.10 8.46 16 15 O -0.54 -9.66 16.34 5.29 0.09 -9.58 16 16 C -0.12 -1.49 5.87 -104.97 -0.62 -2.11 16 17 C -0.07 -0.71 9.53 -39.21 -0.37 -1.09 16 18 C -0.11 -1.01 10.04 -39.53 -0.40 -1.41 16 19 C 0.06 0.59 7.16 -38.87 -0.28 0.31 16 20 C 0.02 0.23 7.14 -39.14 -0.28 -0.05 16 21 C -0.04 -0.49 9.60 -39.07 -0.38 -0.86 16 22 O -0.31 -3.20 11.41 -45.81 -0.52 -3.73 16 23 C 0.21 1.48 8.88 101.05 0.90 2.38 16 24 O -0.31 -2.99 11.39 -45.24 -0.52 -3.50 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.41 5.96 5.46 -40.82 -0.22 5.74 16 29 H 0.15 1.31 6.39 -52.48 -0.34 0.97 16 30 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.15 1.81 7.64 -52.49 -0.40 1.41 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -33.94 304.45 -5.09 -39.03 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -2.57 Total: 4.62 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.06 Total: 7.70 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.42 Total: -35.14 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.44 Total: -36.39 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.94 -5.09 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006107406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.701 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds